FvH4_6g26340

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003387
Physical Location & Seq
Forward (+)
20143264 .. 20144123
860 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26340.t1

Sequence Viewer

Length: 639 bp
ATGCCTAATGCCTTCCCGGCCGACAGTATGACGTCCGGCTCCGATGAGGAAGAGGAAGACCAAGCAGCTTCTGTCGAAGAGAACAAGGCATTTTCGAACGAACAACACCAACTTCTCCAGGCAACATTGCATAGAACCAGTAGCATAGAATCGAAAATCCGACAAGCCACCAAGGAGGTGCTGAGAGAAACTATAGATAGCACGTGCTGCCGGTGTTCGAGGGTTGTGGCCGGAGACTGCCGGAATTGTTTACAAAGCGAAATATGCAATCGGGTTATTAGTTTAGGCTACAACTGTGCCATTTGCAAGTCTAAATGGAAAAGCTCAGCAAGTACCCCATCAGGAGAGCACACTTATTTGGAAGTGATGGACAATTCAAATCTGAAGAGAGGGGAGACTAGGGTGGTGATTAAGCTCAATTTCCGAGCAGAGTTTGAGATGGCCAGAGCTAGCCAAGACTACAACCATTTAATTAGCTTCTTGTCGGAAATCTTTGTCAGTAAAGCCAAAAGACTACGAGCCTTTATCAAAATTTTGTGCAACGCCGCCAAAAAGTGCATGAAGGAGAAGAAAATGCATTTGGGACCTTGGAGGAAGCACAAGTACATGCAAGCTAAGTGGTTTGCATCCTTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

213

Amino Acids

24.2

Weight (kDa)

8.89

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 14 - 211 1.2e-66 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AciI CCGC 1 cut(s) 546
AcoI YGGCCR 3 cut(s) 18, 228, 441
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 1 cut(s) 404
AcvI CACGTG 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 2 cut(s) 334, 605
AgsI TTSAA 1 cut(s) 378
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AluBI AGCT 6 cut(s) 68, 324, 415, 449, 477, 614
AluI AGCT 6 cut(s) 68, 324, 415, 449, 477, 614
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 2 cut(s) 228, 389
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 3 cut(s) 18, 228, 441
ApeKI GCWGC 2 cut(s) 65, 207
ApoI RAATTY 1 cut(s) 531
AspS9I GGNCC 1 cut(s) 584
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 418
AsuII TTCGAA 2 cut(s) 95, 633
AsuNHI GCTAGC 1 cut(s) 449
AvaII GGWCC 1 cut(s) 584
BalI TGGCCA 1 cut(s) 443
BarI GAAGNNNNNNTAC 2 cut(s) 587, 619
BbrPI CACGTG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 77, 194
BccI CCATC 3 cut(s) 346, 361, 433
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 228, 389
BfaI CTAG 2 cut(s) 399, 450
BfmI CTRYAG 1 cut(s) 192
BglI GCCNNNNNGGC 1 cut(s) 17
BisI GCNGC 3 cut(s) 66, 208, 546
BlpI GCTNAGC 1 cut(s) 325
BlsI GCNGC 3 cut(s) 67, 209, 547
Bme1390I CCNGG 2 cut(s) 17, 119
Bme18I GGWCC 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 2 cut(s) 40, 585
BmrFI CCNGG 2 cut(s) 17, 119
BmsI GCATC 1 cut(s) 635
BmtI GCTAGC 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 101
Bpu1102I GCTNAGC 1 cut(s) 325
Bpu14I TTCGAA 2 cut(s) 95, 633
BpuMI CCSGG 1 cut(s) 17
BsaAI YACGTR 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 171, 587
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 171, 587
BseGI GGATG 1 cut(s) 626
BseMI GCAATG 1 cut(s) 125
BseMII CTCAG 2 cut(s) 173, 339
BseNI ACTGG 1 cut(s) 138
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 77, 194
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 3 cut(s) 20, 230, 443
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 5 cut(s) 17, 36, 211, 231, 241
BslFI GGGAC 1 cut(s) 597
BsmAI GTCTC 2 cut(s) 228, 389
BsmFI GGGAC 1 cut(s) 597
BsnI GGCC 3 cut(s) 20, 230, 443
Bsp119I TTCGAA 2 cut(s) 95, 633
Bsp1286I GDGCHC 1 cut(s) 351
Bsp1720I GCTNAGC 1 cut(s) 325
BspACI CCGC 1 cut(s) 546
BspANI GGCC 3 cut(s) 20, 230, 443
BspCNI CTCAG 2 cut(s) 174, 338
BspLI GGNNCC 2 cut(s) 40, 585
BspOI GCTAGC 1 cut(s) 453
BspT104I TTCGAA 2 cut(s) 95, 633
BsrDI GCAATG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 171, 587
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 171, 587
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 26, 296
Bst6I CTCTTC 3 cut(s) 45, 72, 380
BstACI GRCGYC 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 207
BstBAI YACGTR 1 cut(s) 204
BstBI TTCGAA 2 cut(s) 95, 633
BstC8I GCNNGC 2 cut(s) 451, 612
BstDEI CTNAG 3 cut(s) 182, 325, 615
BstF5I GGATG 1 cut(s) 626
BstMAI GTCTC 2 cut(s) 228, 389
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 17, 207, 264
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 2 cut(s) 15, 117
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 77, 194
BstV2I GAAGAC 1 cut(s) 63
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 3 cut(s) 20, 230, 443
BtsCI GGATG 1 cut(s) 626
Cac8I GCNNGC 2 cut(s) 451, 612
CaiI CAGNNNCTG 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 584
Csp6I GTAC 2 cut(s) 333, 604
CspCI CAANNNNNGTGG 2 cut(s) 599, 634
CviAII CATG 2 cut(s) 559, 607
CviQI GTAC 2 cut(s) 333, 604
DdeI CTNAG 3 cut(s) 182, 325, 615
EaeI YGGCCR 3 cut(s) 18, 228, 441
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 3 cut(s) 45, 72, 380
EarI CTCTTC 3 cut(s) 45, 72, 380
EclXI CGGCCG 1 cut(s) 18
Eco130I CCWWGG 2 cut(s) 171, 587
Eco47I GGWCC 1 cut(s) 584
Eco52I CGGCCG 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 404
Eco72I CACGTG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 584
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 171, 587
EcoT22I ATGCAT 1 cut(s) 579
ErhI CCWWGG 2 cut(s) 171, 587
FaeI CATG 2 cut(s) 562, 610
FaiI YATR 7 cut(s) 29, 132, 146, 194, 265, 560, 608
FaqI GGGAC 1 cut(s) 597
FatI CATG 2 cut(s) 558, 606
Fnu4HI GCNGC 3 cut(s) 66, 208, 546
FokI GGATG 1 cut(s) 613
Fsp4HI GCNGC 3 cut(s) 66, 208, 546
FspBI CTAG 2 cut(s) 399, 450
GluI GCNGC 3 cut(s) 66, 208, 546
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 3 cut(s) 20, 230, 443
HapII CCGG 5 cut(s) 17, 36, 211, 231, 241
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 562, 610
HinfI GANTC 1 cut(s) 149
HpaII CCGG 5 cut(s) 17, 36, 211, 231, 241
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 5 cut(s) 43, 161, 384, 425, 487
Hpy188III TCNNGA 1 cut(s) 342
Hpy8I GTNNAC 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 22, 556
HpyCH4III ACNGT 2 cut(s) 26, 296
HpyCH4IV ACGT 2 cut(s) 32, 203
HpyCH4V TGCA 8 cut(s) 130, 267, 306, 540, 558, 577, 610, 626
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 207, 264
HpyF3I CTNAG 3 cut(s) 182, 325, 615
HpySE526I ACGT 2 cut(s) 32, 203
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 562, 610
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 77, 194
LweI GCATC 1 cut(s) 635
MaeI CTAG 2 cut(s) 399, 450
MaeII ACGT 2 cut(s) 32, 203
MboII GAAGA 5 cut(s) 62, 68, 89, 397, 580
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 5 cut(s) 244, 373, 418, 471, 531
MluNI TGGCCA 1 cut(s) 443
MmeI TCCRAC 2 cut(s) 184, 465
MnlI CCTC 6 cut(s) 40, 46, 169, 213, 383, 585
Mox20I TGGCCA 1 cut(s) 443
Mph1103I ATGCAT 1 cut(s) 579
MscI TGGCCA 1 cut(s) 443
MseI TTAA 2 cut(s) 411, 470
Msp20I TGGCCA 1 cut(s) 443
MspI CCGG 5 cut(s) 17, 36, 211, 231, 241
MspR9I CCNGG 2 cut(s) 17, 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 17, 207, 264
NciI CCSGG 1 cut(s) 17
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 2 cut(s) 562, 610
NlaIV GGNNCC 2 cut(s) 40, 585
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 1 cut(s) 610
NspV TTCGAA 2 cut(s) 95, 633
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 3 cut(s) 67, 209, 547
PmaCI CACGTG 1 cut(s) 204
PmlI CACGTG 1 cut(s) 204
Ppu21I YACGTR 1 cut(s) 204
PpuMI RGGWCCY 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 117
PspCI CACGTG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 40, 585
PspPI GGNCC 1 cut(s) 584
PspPPI RGGWCCY 1 cut(s) 584
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 334, 605
RsaNI GTAC 2 cut(s) 333, 604
SaqAI TTAA 2 cut(s) 411, 470
SatI GCNGC 3 cut(s) 66, 208, 546
Sau96I GGNCC 1 cut(s) 584
ScrFI CCNGG 2 cut(s) 17, 119
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 1 cut(s) 635
SfcI CTRYAG 1 cut(s) 192
SfuI TTCGAA 2 cut(s) 95, 633
SinI GGWCC 1 cut(s) 584
Sse9I AATT 5 cut(s) 244, 373, 418, 471, 531
SsiI CCGC 1 cut(s) 546
SspMI CTAG 2 cut(s) 399, 450
StyD4I CCNGG 2 cut(s) 15, 117
StyI CCWWGG 2 cut(s) 171, 587
TaaI ACNGT 2 cut(s) 26, 296
TaiI ACGT 2 cut(s) 35, 206
TaqI TCGA 5 cut(s) 75, 95, 152, 218, 633
TasI AATT 5 cut(s) 244, 373, 418, 471, 531
TatI WGTACW 1 cut(s) 603
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 2 cut(s) 411, 470
Tru9I TTAA 2 cut(s) 411, 470
TseI GCWGC 2 cut(s) 65, 207
TspDTI ATGAA 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 1 cut(s) 531
XceI RCATGY 1 cut(s) 610
XspI CTAG 2 cut(s) 399, 450
ZraI GACGTC 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.