RchiOBHm_Chr5g0008561

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003387
Physical Location & Seq
Forward (+)
5491741 .. 5493572
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28952

Sequence Viewer

Length: 879 bp
ATGGCCAGAACTGCGGCGAGCACTGCACGGCAGTTGTTGGCGGCGAGTTTCTCCGGCATGGTTTTCGGGTTTCTAGAAGACGGAGGTCAGGAATTCAAGCAGAGTTACAGCAGCAGCGATGGGAGTAGTCAAGAAAATGAGGCAATGTTCGATATCGAGGATGATCATGAAGAGGCCGGAGAGGACGAAAAGGATAAGAAGTTCTGGGACAACCAGAACCAGATTTTAGAGGCAACGTTATGCAGGACTAGTTCTCTAGAGACGAAGATTAGGAGCGTGACAAAGGAAACGGTGAAGGAGTCGGGGGAGGCGGTGTGCGGTTGTGGGAAGGCGGCGAGTGGTTGCCGGAGCTGCCTTATGAGGGAAGTTTCCGGCAGGCTTTGCAATGCTGGTTACAACAGTGCCATATGCAAGTCCAAGTGGAGGAGTTCGCCGGATATTCCTTCAGGAGAGCACACATTTTTGGATGTGGTGGACAATTCAAGCTCAAGGAAAGGAGAGGTGAGGGTGATCATAGAACTCAACTTCAGAGCCGAGTTTGAGATGGCGAGAGCAAGCGACGAATACAACACATTGGTGCAACGACTTCCCGAAATCTTTGTCGGCAAGGTCGAAAGACTTCAAAATTTGATCAAAATTTTGTGTTCGGCTGCCAAGAAGTGTATGAAGGAGAAGAAAATGCACATGGGGCCGTGGAGGAAGCAAAAGTACATGCAAGCTAAATGGCTTGGTGCCTGCAAGAGAACGACGTCAACACCGCCTTTGTCAATGGGGCAATCGGATCAGCTGCGGCCGAGGCCGAAGGCATCGATGCTAACTGTTGATTTGCTAGGAGAGATGATACCTAATATTCACTGCAAAGTGGTTGCAGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

292

Amino Acids

32.5

Weight (kDa)

8.23

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 19 - 248 8.3e-81 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 752
AccB1I GGYRCC 1 cut(s) 731
AciI CCGC 7 cut(s) 14, 41, 311, 318, 332, 758, 790
AclI AACGTT 1 cut(s) 236
AclWI GGATC 1 cut(s) 789
AcoI YGGCCR 2 cut(s) 3, 791
AcsI RAATTY 3 cut(s) 92, 625, 636
AcuI CTGAAG 2 cut(s) 429, 511
AcyI GRCGYC 1 cut(s) 749
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 2 cut(s) 361, 423
AgsI TTSAA 3 cut(s) 97, 483, 623
AhlI ACTAGT 1 cut(s) 248
AleI CACNNNNGTG 1 cut(s) 575
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 4 cut(s) 351, 486, 719, 787
AluI AGCT 4 cut(s) 351, 486, 719, 787
Alw21I GWGCWC 2 cut(s) 23, 456
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 789
AoxI GGCC 5 cut(s) 3, 174, 689, 791, 797
ApeKI GCWGC 5 cut(s) 111, 114, 351, 650, 787
ApoI RAATTY 3 cut(s) 92, 625, 636
ArsI GACNNNNNNTTYG 2 cut(s) 585, 617
Asp700I GAANNNNTTC 1 cut(s) 618
AspS9I GGNCC 1 cut(s) 689
AsuHPI GGTGA 3 cut(s) 304, 514, 520
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 731
BarI GAAGNNNNNNTAC 2 cut(s) 692, 724
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 23, 456
BbvI GCAGC 5 cut(s) 123, 126, 338, 637, 774
BccI CCATC 2 cut(s) 113, 538
BceAI ACGGC 2 cut(s) 44, 676
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BclI TGATCA 3 cut(s) 163, 510, 630
BcoDI GTCTC 1 cut(s) 254
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 4 cut(s) 74, 249, 257, 830
BisI GCNGC 9 cut(s) 15, 42, 112, 115, 333, 352, 651, 788, 791
BlsI GCNGC 9 cut(s) 16, 43, 113, 116, 334, 353, 652, 789, 792
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 2 cut(s) 690, 733
BmsI GCATC 2 cut(s) 801, 815
BoxI GACNNNNGTC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 472
Bsa29I ATCGAT 1 cut(s) 809
BsaHI GRCGYC 1 cut(s) 749
BsaJI CCNNGG 2 cut(s) 692, 794
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 423
Bse3DI GCAATG 2 cut(s) 150, 391
BseCI ATCGAT 1 cut(s) 809
BseDI CCNNGG 2 cut(s) 692, 794
BseGI GGATG 2 cut(s) 166, 472
BseLI CCNNNNNNNGG 2 cut(s) 361, 423
BseMI GCAATG 2 cut(s) 150, 391
BseRI GAGGAG 1 cut(s) 439
BseX3I CGGCCG 1 cut(s) 791
BseXI GCAGC 5 cut(s) 123, 126, 338, 637, 774
BsgI GTGCAG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 794
BshFI GGCC 5 cut(s) 5, 176, 691, 793, 799
BshNI GGYRCC 1 cut(s) 731
BshVI ATCGAT 1 cut(s) 809
BsiEI CGRYCG 1 cut(s) 794
BsiHKAI GWGCWC 2 cut(s) 23, 456
BsiSI CCGG 5 cut(s) 54, 177, 346, 372, 434
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 361, 423
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 5 cut(s) 5, 176, 691, 793, 799
Bsp1286I GDGCHC 2 cut(s) 23, 456
Bsp143I GATC 4 cut(s) 163, 510, 630, 781
BspACI CCGC 7 cut(s) 14, 41, 311, 318, 332, 758, 790
BspANI GGCC 5 cut(s) 5, 176, 691, 793, 799
BspDI ATCGAT 1 cut(s) 809
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 690, 733
BspPI GGATC 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 731
BsrDI GCAATG 2 cut(s) 150, 391
BssECI CCNNGG 2 cut(s) 692, 794
BssMI GATC 4 cut(s) 163, 510, 630, 781
BssNI GRCGYC 1 cut(s) 749
Bst4CI ACNGT 3 cut(s) 292, 401, 820
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 749
BstAPI GCANNNNNTGC 1 cut(s) 381
BstC8I GCNNGC 5 cut(s) 19, 377, 556, 717, 736
BstDSI CCRYGG 1 cut(s) 692
BstF5I GGATG 2 cut(s) 166, 472
BstKTI GATC 4 cut(s) 166, 513, 633, 784
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 4 cut(s) 163, 510, 630, 781
BstMCI CGRYCG 1 cut(s) 794
BstMWI GCNNNNNNNGC 6 cut(s) 11, 23, 351, 381, 688, 796
BstNSI RCATGY 1 cut(s) 715
BstPAI GACNNNNGTC 1 cut(s) 84
BstV1I GCAGC 5 cut(s) 123, 126, 338, 637, 774
BstV2I GAAGAC 1 cut(s) 84
BstZI CGGCCG 1 cut(s) 791
Bsu15I ATCGAT 1 cut(s) 809
BsuRI GGCC 5 cut(s) 5, 176, 691, 793, 799
BsuTUI ATCGAT 1 cut(s) 809
BtgI CCRYGG 1 cut(s) 692
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 166, 472
BtsI GCAGTG 2 cut(s) 21, 853
BtsIMutI CAGTG 3 cut(s) 21, 406, 853
Cac8I GCNNGC 5 cut(s) 19, 377, 556, 717, 736
CciI TCATGA 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 689
ClaI ATCGAT 1 cut(s) 809
Csp6I GTAC 1 cut(s) 709
CviAII CATG 4 cut(s) 58, 167, 685, 712
CviQI GTAC 1 cut(s) 709
DpnI GATC 4 cut(s) 165, 512, 632, 783
DpnII GATC 4 cut(s) 163, 510, 630, 781
EaeI YGGCCR 2 cut(s) 3, 791
EagI CGGCCG 1 cut(s) 791
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EclXI CGGCCG 1 cut(s) 791
Eco32I GATATC 1 cut(s) 154
Eco52I CGGCCG 1 cut(s) 791
Eco57I CTGAAG 2 cut(s) 429, 511
EcoRI GAATTC 1 cut(s) 92
EcoRV GATATC 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 4 cut(s) 61, 170, 688, 715
FaqI GGGAC 1 cut(s) 221
FatI CATG 4 cut(s) 57, 166, 684, 711
FauNDI CATATG 1 cut(s) 407
FbaI TGATCA 3 cut(s) 163, 510, 630
Fnu4HI GCNGC 9 cut(s) 15, 42, 112, 115, 333, 352, 651, 788, 791
FokI GGATG 2 cut(s) 173, 479
Fsp4HI GCNGC 9 cut(s) 15, 42, 112, 115, 333, 352, 651, 788, 791
FspBI CTAG 4 cut(s) 74, 249, 257, 830
GluI GCNGC 9 cut(s) 15, 42, 112, 115, 333, 352, 651, 788, 791
HaeIII GGCC 5 cut(s) 5, 176, 691, 793, 799
HapII CCGG 5 cut(s) 54, 177, 346, 372, 434
Hin1I GRCGYC 1 cut(s) 749
Hin1II CATG 4 cut(s) 61, 170, 688, 715
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HinfI GANTC 1 cut(s) 299
HpaII CCGG 5 cut(s) 54, 177, 346, 372, 434
HphI GGTGA 3 cut(s) 304, 514, 520
Hpy166II GTNNAC 2 cut(s) 475, 753
Hpy188I TCNGA 2 cut(s) 530, 781
Hpy188III TCNNGA 7 cut(s) 74, 89, 131, 167, 257, 447, 590
Hpy8I GTNNAC 2 cut(s) 475, 753
Hpy99I CGWCG 2 cut(s) 563, 751
HpyAV CCTTC 5 cut(s) 289, 322, 453, 661, 796
HpyCH4III ACNGT 3 cut(s) 292, 401, 820
HpyCH4IV ACGT 2 cut(s) 236, 749
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 23, 351, 381, 688, 796
HpySE526I ACGT 2 cut(s) 236, 749
Hsp92I GRCGYC 1 cut(s) 749
Hsp92II CATG 4 cut(s) 61, 170, 688, 715
Ksp22I TGATCA 3 cut(s) 163, 510, 630
Kzo9I GATC 4 cut(s) 163, 510, 630, 781
LmnI GCTCC 2 cut(s) 273, 348
Lsp1109I GCAGC 5 cut(s) 123, 126, 338, 637, 774
LweI GCATC 2 cut(s) 801, 815
MaeI CTAG 4 cut(s) 74, 249, 257, 830
MaeII ACGT 2 cut(s) 236, 749
MaeIII GTNAC 3 cut(s) 104, 277, 392
MalI GATC 4 cut(s) 165, 512, 632, 783
MboI GATC 4 cut(s) 163, 510, 630, 781
MboII GAAGA 4 cut(s) 89, 182, 277, 685
MhlI GDGCHC 2 cut(s) 23, 456
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 92, 478, 625, 636
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 308
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 618
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 787
MspI CCGG 5 cut(s) 54, 177, 346, 372, 434
MwoI GCNNNNNNNGC 6 cut(s) 11, 23, 351, 381, 688, 796
NdeI CATATG 1 cut(s) 407
NdeII GATC 4 cut(s) 163, 510, 630, 781
NlaIII CATG 4 cut(s) 61, 170, 688, 715
NlaIV GGNNCC 2 cut(s) 690, 733
NmeAIII GCCGAG 2 cut(s) 559, 819
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 715
OliI CACNNNNGTG 1 cut(s) 575
PagI TCATGA 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PdmI GAANNNNTTC 1 cut(s) 618
PkrI GCNGC 9 cut(s) 16, 43, 113, 116, 334, 353, 652, 789, 792
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PshAI GACNNNNGTC 1 cut(s) 84
Psp1406I AACGTT 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 690, 733
PspPI GGNCC 1 cut(s) 689
PvuII CAGCTG 1 cut(s) 787
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
RseI CAYNNNNRTG 1 cut(s) 575
SatI GCNGC 9 cut(s) 15, 42, 112, 115, 333, 352, 651, 788, 791
Sau3AI GATC 4 cut(s) 163, 510, 630, 781
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 1 cut(s) 308
SduI GDGCHC 2 cut(s) 23, 456
SfaNI GCATC 2 cut(s) 801, 815
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 4 cut(s) 92, 478, 625, 636
SsiI CCGC 7 cut(s) 14, 41, 311, 318, 332, 758, 790
SspI AATATT 1 cut(s) 850
SspMI CTAG 4 cut(s) 74, 249, 257, 830
TaaI ACNGT 3 cut(s) 292, 401, 820
TaiI ACGT 2 cut(s) 239, 752
TaqI TCGA 4 cut(s) 150, 156, 612, 809
TasI AATT 4 cut(s) 92, 478, 625, 636
TatI WGTACW 1 cut(s) 708
TauI GCSGC 4 cut(s) 17, 44, 335, 793
TscAI CASTG 3 cut(s) 28, 406, 860
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 5 cut(s) 111, 114, 351, 650, 787
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 2 cut(s) 183, 680
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 3 cut(s) 28, 406, 860
XapI RAATTY 3 cut(s) 92, 625, 636
XbaI TCTAGA 2 cut(s) 73, 256
XceI RCATGY 1 cut(s) 715
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 4 cut(s) 74, 249, 257, 830
ZraI GACGTC 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.