MD09G1246100.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0003387
Physical Location & Seq
Reverse (-)
31528982 .. 31530512
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1246100.v1.1.491

Sequence Viewer

Length: 888 bp
ATGGCCGCAGCGATGGTTAGAAAACCTGTGATTCTCCGGAGTTCCGACGATATTTTTGAATTTCCCGGTACAGGTGTAAGTCTCGGGGACATGGTTCTGGATTTCATCGAGGAAGTCGAGGTGTCACCGGAGTTTAATACTACCTCTGGCTCCGATGAAGACGACGAGAATTCTTGCGGTGTGGAAGAGAACAAGGCATTTTGGGAAGAACAGGACCAACTTCTGCAGGCGACATTGTGCAAGAGCAGTAGCGTTGAATCGAAAATCCGACAAGCCACTAAGGAAGCGTTAAGGGAAATCAATTCATCAAGCGAAGAATACTGCGTTTGTGCGAGACCGGTGACCGGAGGTTGCTGGAAATGTTTGCGTACCGAAATATGCAAACGGCTAATTGATTCTGGATACAATTGTGTCATTTGCAAGTCTAAGTGGAGAAGCTCAACAAATGCCCCAGCAGGGGAGCATACGTATTTGGAAGTGCTGGATAAAAGTTCAAAGAGAGGGGAGATTAGTGTTGCAATTGAGCTAAATTTCCGAGCTGAGTTCGAGATGGCAAGAGCTAGCGAAAACTACAACAGATTGATTAGCTGGTTACCTGAAGTGTTTGTTGGGAAAGCCGAAAGACTACGAGCATTGATCAAGATTTTGTGCTGCGCAGCCAAGAAATGTATGAAGGAGAAGAAAATGCACTTGGGACCTTGGAGGAAGCACAAGTACATGCAAGCCAAGTGGTTTGGGACGTTGGAGAGGTCAACGCCGGGGTCGTTGCCAGTCGGATTTTCGCACGGGCCGCCGAAGCCTAAGGCCTCGATTTTGGCCTTTGATTTGTTGGACGTGGCGATGGCTCAAGGCTTGCATTGCTCTAGTACTGCAGTTGAAGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

296

Amino Acids

32.89

Weight (kDa)

6.27

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 30 - 250 1e-72 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 655
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 3 cut(s) 6, 177, 791
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 59, 169, 529
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 4 cut(s) 70, 370, 716, 868
AfiI CCNNNNNNNGG 4 cut(s) 71, 344, 456, 457
AgeI ACCGGT 1 cut(s) 337
AgsI TTSAA 4 cut(s) 59, 257, 495, 878
AjiI CACGTC 1 cut(s) 835
AjuI GAANNNNNNNTTGG 4 cut(s) 591, 623, 674, 706
AluBI AGCT 5 cut(s) 438, 526, 539, 560, 588
AluI AGCT 5 cut(s) 438, 526, 539, 560, 588
Alw26I GTCTC 2 cut(s) 86, 328
Ama87I CYCGRG 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 4 cut(s) 3, 788, 804, 816
ApeKI GCWGC 3 cut(s) 8, 651, 656
ApoI RAATTY 3 cut(s) 59, 169, 529
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AsiGI ACCGGT 1 cut(s) 337
AspLEI GCGC 1 cut(s) 656
AspS9I GGNCC 3 cut(s) 214, 695, 788
AsuC2I CCSGG 2 cut(s) 66, 759
AsuHPI GGTGA 2 cut(s) 117, 352
AsuNHI GCTAGC 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 2 cut(s) 214, 695
AxyI CCTNAGG 1 cut(s) 801
BaeI ACNNNNGTAYC 4 cut(s) 60, 93, 394, 427
BarI GAAGNNNNNNTAC 2 cut(s) 698, 730
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 20, 638, 668
BccI CCATC 3 cut(s) 7, 544, 835
BceAI ACGGC 1 cut(s) 401
BciVI GTATCC 1 cut(s) 395
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 2 cut(s) 66, 759
BcoDI GTCTC 2 cut(s) 86, 328
BfaI CTAG 2 cut(s) 561, 864
BfmI CTRYAG 2 cut(s) 224, 870
BfuI GTATCC 1 cut(s) 395
BisI GCNGC 5 cut(s) 6, 9, 652, 657, 791
BlsI GCNGC 5 cut(s) 7, 10, 653, 658, 792
BmcAI AGTACT 1 cut(s) 868
Bme1390I CCNGG 2 cut(s) 66, 759
Bme18I GGWCC 2 cut(s) 214, 695
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 835
BmgT120I GGNCC 3 cut(s) 214, 695, 788
BmiI GGNNCC 2 cut(s) 151, 696
BmrFI CCNGG 2 cut(s) 66, 759
BmtI GCTAGC 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 831
BpuMI CCSGG 2 cut(s) 66, 759
BsaAI YACGTR 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 2 cut(s) 698, 758
BsaWI WCCGGW 4 cut(s) 36, 127, 337, 344
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 344, 456, 457
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 770
Bse21I CCTNAGG 1 cut(s) 801
Bse3DI GCAATG 1 cut(s) 856
BseAI TCCGGA 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 698, 758
BseLI CCNNNNNNNGG 4 cut(s) 71, 344, 456, 457
BseMI GCAATG 1 cut(s) 856
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 770
BseXI GCAGC 3 cut(s) 20, 638, 668
BseYI CCCAGC 1 cut(s) 451
BshFI GGCC 4 cut(s) 5, 790, 806, 818
BshTI ACCGGT 1 cut(s) 337
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 6 cut(s) 37, 66, 128, 338, 345, 758
BslFI GGGAC 3 cut(s) 101, 708, 751
BslI CCNNNNNNNGG 4 cut(s) 71, 344, 456, 457
BsmAI GTCTC 2 cut(s) 86, 328
BsmFI GGGAC 3 cut(s) 101, 708, 751
BsnI GGCC 4 cut(s) 5, 790, 806, 818
Bso31I GGTCTC 1 cut(s) 328
BsoBI CYCGRG 1 cut(s) 83
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 1 cut(s) 636
BspACI CCGC 3 cut(s) 6, 177, 791
BspANI GGCC 4 cut(s) 5, 790, 806, 818
BspCNI CTCAG 1 cut(s) 532
BspEI TCCGGA 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 151, 696
BspMAI CTGCAG 2 cut(s) 228, 874
BspOI GCTAGC 1 cut(s) 564
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 856
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 1 cut(s) 770
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 698, 758
BssMI GATC 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 698
Bst6I CTCTTC 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 468
BstC8I GCNNGC 4 cut(s) 228, 562, 723, 854
BstDEI CTNAG 4 cut(s) 279, 426, 540, 801
BstEII GGTNACC 2 cut(s) 340, 591
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 1 cut(s) 639
BstMAI GTCTC 2 cut(s) 86, 328
BstMBI GATC 1 cut(s) 636
BstMWI GCNNNNNNNGC 3 cut(s) 790, 796, 858
BstNSI RCATGY 1 cut(s) 721
BstPI GGTNACC 2 cut(s) 340, 591
BstSCI CCNGG 2 cut(s) 64, 757
BstSFI CTRYAG 2 cut(s) 224, 870
BstSNI TACGTA 1 cut(s) 468
BstV1I GCAGC 3 cut(s) 20, 638, 668
BstV2I GAAGAC 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 801
BsuI GTATCC 1 cut(s) 395
BsuRI GGCC 4 cut(s) 5, 790, 806, 818
BtgZI GCGATG 2 cut(s) 26, 854
BtrI CACGTC 1 cut(s) 835
Cac8I GCNNGC 4 cut(s) 228, 562, 723, 854
CfoI GCGC 1 cut(s) 656
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 3 cut(s) 214, 695, 788
Csp6I GTAC 4 cut(s) 69, 369, 715, 867
CspAI ACCGGT 1 cut(s) 337
CspCI CAANNNNNGTGG 2 cut(s) 710, 745
CviAII CATG 2 cut(s) 91, 718
CviQI GTAC 4 cut(s) 69, 369, 715, 867
DdeI CTNAG 4 cut(s) 279, 426, 540, 801
DpnI GATC 1 cut(s) 638
DpnII GATC 1 cut(s) 636
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco105I TACGTA 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 698
Eco147I AGGCCT 1 cut(s) 806
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 2 cut(s) 214, 695
Eco57I CTGAAG 1 cut(s) 618
Eco81I CCTNAGG 1 cut(s) 801
Eco88I CYCGRG 1 cut(s) 83
Eco91I GGTNACC 2 cut(s) 340, 591
EcoO109I RGGNCCY 1 cut(s) 695
EcoO65I GGTNACC 2 cut(s) 340, 591
EcoRI GAATTC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 698
FaeI CATG 2 cut(s) 94, 721
FaiI YATR 5 cut(s) 92, 379, 465, 671, 719
FaqI GGGAC 3 cut(s) 101, 708, 751
FatI CATG 2 cut(s) 90, 717
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 5 cut(s) 6, 9, 652, 657, 791
Fsp4HI GCNGC 5 cut(s) 6, 9, 652, 657, 791
FspBI CTAG 2 cut(s) 561, 864
FspI TGCGCA 1 cut(s) 655
GlaI GCGC 1 cut(s) 655
GluI GCNGC 5 cut(s) 6, 9, 652, 657, 791
GsaI CCCAGC 1 cut(s) 455
HaeIII GGCC 4 cut(s) 5, 790, 806, 818
HapII CCGG 6 cut(s) 37, 66, 128, 338, 345, 758
HhaI GCGC 1 cut(s) 656
Hin1II CATG 2 cut(s) 94, 721
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HinfI GANTC 3 cut(s) 31, 257, 395
HpaII CCGG 6 cut(s) 37, 66, 128, 338, 345, 758
HphI GGTGA 2 cut(s) 117, 352
Hpy166II GTNNAC 1 cut(s) 753
Hpy188I TCNGA 5 cut(s) 46, 154, 269, 536, 776
Hpy188III TCNNGA 5 cut(s) 37, 98, 399, 547, 640
Hpy8I GTNNAC 1 cut(s) 753
Hpy99I CGWCG 2 cut(s) 50, 167
HpyAV CCTTC 1 cut(s) 667
HpyCH4IV ACGT 3 cut(s) 467, 740, 834
HpyCH4V TGCA 9 cut(s) 226, 240, 381, 420, 518, 688, 721, 856, 872
HpyF10VI GCNNNNNNNGC 3 cut(s) 790, 796, 858
HpyF3I CTNAG 4 cut(s) 279, 426, 540, 801
HpySE526I ACGT 3 cut(s) 467, 740, 834
Hsp92II CATG 2 cut(s) 94, 721
HspAI GCGC 1 cut(s) 654
Kpn2I TCCGGA 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 1 cut(s) 636
LmnI GCTCC 2 cut(s) 155, 460
Lsp1109I GCAGC 3 cut(s) 20, 638, 668
MaeI CTAG 2 cut(s) 561, 864
MaeII ACGT 3 cut(s) 467, 740, 834
MaeIII GTNAC 3 cut(s) 123, 340, 591
MalI GATC 1 cut(s) 638
MboI GATC 1 cut(s) 636
MboII GAAGA 5 cut(s) 170, 197, 218, 326, 691
MfeI CAATTG 2 cut(s) 406, 519
MluCI AATT 7 cut(s) 59, 169, 301, 390, 406, 519, 529
MmeI TCCRAC 5 cut(s) 69, 292, 723, 754, 810
MnlI CCTC 8 cut(s) 103, 112, 154, 341, 494, 696, 741, 817
MroI TCCGGA 1 cut(s) 36
MseI TTAA 2 cut(s) 135, 290
MspI CCGG 6 cut(s) 37, 66, 128, 338, 345, 758
MspR9I CCNGG 2 cut(s) 66, 759
MunI CAATTG 2 cut(s) 406, 519
MwoI GCNNNNNNNGC 3 cut(s) 790, 796, 858
NciI CCSGG 2 cut(s) 66, 759
NdeII GATC 1 cut(s) 636
NheI GCTAGC 1 cut(s) 560
NlaIII CATG 2 cut(s) 94, 721
NlaIV GGNNCC 2 cut(s) 151, 696
NmuCI GTSAC 2 cut(s) 123, 340
NsbI TGCGCA 1 cut(s) 655
NspI RCATGY 1 cut(s) 721
PceI AGGCCT 1 cut(s) 806
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 761
PfeI GAWTC 3 cut(s) 31, 257, 395
PinAI ACCGGT 1 cut(s) 337
PkrI GCNGC 5 cut(s) 7, 10, 653, 658, 792
Ppu21I YACGTR 1 cut(s) 468
PpuMI RGGWCCY 1 cut(s) 695
Psp5II RGGWCCY 1 cut(s) 695
PspEI GGTNACC 2 cut(s) 340, 591
PspFI CCCAGC 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 151, 696
PspPI GGNCC 3 cut(s) 214, 695, 788
PspPPI RGGWCCY 1 cut(s) 695
PstI CTGCAG 2 cut(s) 228, 874
RsaI GTAC 4 cut(s) 70, 370, 716, 868
RsaNI GTAC 4 cut(s) 69, 369, 715, 867
SaqAI TTAA 2 cut(s) 135, 290
SatI GCNGC 5 cut(s) 6, 9, 652, 657, 791
Sau3AI GATC 1 cut(s) 636
Sau96I GGNCC 3 cut(s) 214, 695, 788
ScaI AGTACT 1 cut(s) 868
ScrFI CCNGG 2 cut(s) 66, 759
SfcI CTRYAG 2 cut(s) 224, 870
SinI GGWCC 2 cut(s) 214, 695
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
SnaBI TACGTA 1 cut(s) 468
Sse9I AATT 7 cut(s) 59, 169, 301, 390, 406, 519, 529
SseBI AGGCCT 1 cut(s) 806
SsiI CCGC 3 cut(s) 6, 177, 791
SspMI CTAG 2 cut(s) 561, 864
StuI AGGCCT 1 cut(s) 806
StyD4I CCNGG 2 cut(s) 64, 757
StyI CCWWGG 1 cut(s) 698
TaiI ACGT 3 cut(s) 470, 743, 837
TaqI TCGA 5 cut(s) 108, 117, 260, 546, 809
TasI AATT 7 cut(s) 59, 169, 301, 390, 406, 519, 529
TatI WGTACW 2 cut(s) 714, 866
TauI GCSGC 2 cut(s) 8, 793
TfiI GAWTC 3 cut(s) 31, 257, 395
Tru1I TTAA 2 cut(s) 135, 290
Tru9I TTAA 2 cut(s) 135, 290
TseFI GTSAC 2 cut(s) 123, 340
TseI GCWGC 3 cut(s) 8, 651, 656
Tsp45I GTSAC 2 cut(s) 123, 340
TspDTI ATGAA 4 cut(s) 94, 171, 294, 686
VpaK11BI GGWCC 2 cut(s) 214, 695
XapI RAATTY 3 cut(s) 59, 169, 529
XceI RCATGY 1 cut(s) 721
XspI CTAG 2 cut(s) 561, 864
ZrmI AGTACT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.