Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003387

Physical Location & Seq

Genomic Coordinates Reverse (-)

26383482 .. 26386038

Gene Structure 2557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCAAGAGCAGCTCCGGCCACCGCTCGAGAGTTATTAGCGGCGAGTTTTTCCGGCATGGTTTTCGGGTTCCTCGAAGACGGCCACGAGTTTCCGGAAAGTTGCGGCAGCAGCGACGGAAGCCAAGAAAATGACGCCTTTTTGTTAGATGAAGAAGAGGAAGCCGGAGATCAGGAGGAGGACAAGAGGTTTTGGGAAAAACAGCACCAACTTTTACAAGCTACCTTATACAGGACTAGTTCTCTAGAGACGAGGATTAGAAGTTTGACAAGGGAGGCGGTGAAGGAGATACAGCGGTCAGGGACGGAGTGTGGTTGCGGGAAACCGATGGCGAGCGGTTGCCGGAGCTGCCTCATGAGAGAAGTTTCCGGCAGACTTAGCAATGCTGGTTACAACAGTGCCATGTGCAAGTCTAAGTGGAGGAGTTCACCGGACATTCCTTCAGGAGAGCATTCATATTTGGATGTGGTGAACAATTCAAGTCTAAAGAAGGGGGAGGTGAGGGTGATCATAGAGCTGAACTTCAGAGACGAATTCGAGATGGCTCGGGCGAGCAACGAATACAACGATCTGGTTCAAAAACTCCCTGAAGTTTTTGTCGGCAAAGTTGAGAGACTGCAAAGCCTGATTAAAATTTTATGTTCTGCCGCCAAGAAATGCATGAAGGAAAAGAAAATGCACATGGGGCCATGGAGGAAGCAGAAGTACATGCAAGCAAAGTGGCTCGGCCCCTGCAAAAGAACAACATCGACGCCACTTCTGGCCGTGGGAGACTCCGCCAGGCTGCGACCGAAGCCTAAGGAGTCGATGCTGACCGTAGATTTGCTAGAGATGGTGCATAACAGGCATTGCATGACAGCAGTTCAAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

292

Amino Acids

32.74

Weight (kDa)

8.27

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20670 AT4G32480
fragaria_vesca	FvH4_1g11850 FvH4_3g09070 FvH4_6g26340
malus_domestica	MD05G1338400.v1.1 MD06G1071700.v1.1 MD09G1246100.v1.1 MD10G1293600.v1.1 MD17G1238700.v1.1
prunus_persica	Prupe.3G131700_v2.0.a1 Prupe.4G048200_v2.0.a1
pyrus_communis	pycom05g28980 pycom09g16360 pycom10g24550 pycom17g24280
rosa_chinensis	RchiOBHm_Chr2g0126781 RchiOBHm_Chr5g0008561
rosa_laevigata	RLG00000018922 RLG00000031583
rosa_multiflora	Rmu_sc0000007.1_g000008 Rmu_sc0001665.1_g000018
rosa_roxburghii	Rroxscaffold_1G00067980 Rroxscaffold_2G00116980
rosa_rugosa	Rorug02G0264700 Rorug04G0436700
rosa_samantha	Rh2AG321900 Rh2BG329800 Rh2CG309700 Rh2DG349100 Rh5AG065500 Rh5BG063000 Rh5CG073100 Rh5DG063200
rosa_wichuraiana	Rw2G026090 Rw5G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	26, 336
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	9 cut(s)	24, 41, 105, 278, 295, 318, 336, 648, 777
AcoI	YGGCCR	3 cut(s)	18, 82, 762
AcsI	RAATTY	2 cut(s)	533, 633
AcuI	CTGAAG	3 cut(s)	426, 508, 609
AcyI	GRCGYC	2 cut(s)	135, 752
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	480, 578, 866
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	779
AluBI	AGCT	4 cut(s)	14, 221, 348, 517
AluI	AGCT	4 cut(s)	14, 221, 348, 517
Alw26I	GTCTC	4 cut(s)	242, 522, 607, 765
Ama87I	CYCGRG	2 cut(s)	27, 546
Aor13HI	TCCGGA	1 cut(s)	94
AoxI	GGCC	5 cut(s)	18, 82, 686, 727, 762
ApeKI	GCWGC	5 cut(s)	11, 108, 111, 348, 784
ApoI	RAATTY	2 cut(s)	533, 633
ArsI	GACNNNNNNTTYG	2 cut(s)	805, 837
AspS9I	GGNCC	2 cut(s)	686, 728
AsuHPI	GGTGA	5 cut(s)	292, 420, 481, 511, 517
AvaI	CYCGRG	2 cut(s)	27, 546
AxyI	CCTNAGG	1 cut(s)	798
BaeI	ACNNNNGTAYC	2 cut(s)	281, 314
BarI	GAAGNNNNNNTAC	2 cut(s)	689, 721
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	5 cut(s)	23, 120, 123, 335, 771
BccI	CCATC	3 cut(s)	322, 535, 826
BceAI	ACGGC	2 cut(s)	97, 749
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	1 cut(s)	781
BclI	TGATCA	1 cut(s)	507
BcoDI	GTCTC	4 cut(s)	242, 522, 607, 765
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	3 cut(s)	237, 245, 827
BisI	GCNGC	8 cut(s)	12, 42, 106, 109, 112, 349, 648, 785
BlsI	GCNGC	8 cut(s)	13, 43, 107, 110, 113, 350, 649, 786
Bme1390I	CCNGG	1 cut(s)	781
BmeT110I	CYCGRG	2 cut(s)	27, 546
BmgT120I	GGNCC	2 cut(s)	686, 728
BmiI	GGNNCC	3 cut(s)	71, 687, 730
BmrFI	CCNGG	1 cut(s)	781
BmsI	GCATC	1 cut(s)	798
BpiI	GAAGAC	1 cut(s)	84
BsaHI	GRCGYC	2 cut(s)	135, 752
BsaJI	CCNNGG	2 cut(s)	689, 765
BsaWI	WCCGGW	2 cut(s)	94, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	798
Bse3DI	GCAATG	2 cut(s)	388, 847
BseAI	TCCGGA	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	781
BseDI	CCNNGG	2 cut(s)	689, 765
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	388, 847
BseRI	GAGGAG	2 cut(s)	191, 436
BseXI	GCAGC	5 cut(s)	23, 120, 123, 335, 771
Bsh1285I	CGRYCG	1 cut(s)	791
BshFI	GGCC	5 cut(s)	20, 84, 688, 729, 764
BsiEI	CGRYCG	1 cut(s)	791
BsiHKCI	CYCGRG	2 cut(s)	27, 546
BsiSI	CCGG	7 cut(s)	17, 54, 95, 165, 343, 369, 431
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	4 cut(s)	242, 522, 607, 765
BsmBI	CGTCTC	2 cut(s)	242, 522
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	5 cut(s)	20, 84, 688, 729, 764
BsoBI	CYCGRG	2 cut(s)	27, 546
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	169, 507, 568
Bsp19I	CCATGG	1 cut(s)	689
BspACI	CCGC	9 cut(s)	24, 41, 105, 278, 295, 318, 336, 648, 777
BspANI	GGCC	5 cut(s)	20, 84, 688, 729, 764
BspEI	TCCGGA	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	3 cut(s)	71, 687, 730
BsrBI	CCGCTC	2 cut(s)	26, 336
BsrDI	GCAATG	2 cut(s)	388, 847
BssECI	CCNNGG	2 cut(s)	689, 765
BssMI	GATC	3 cut(s)	169, 507, 568
BssNI	GRCGYC	2 cut(s)	135, 752
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	689
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	781
Bst4CI	ACNGT	2 cut(s)	398, 817
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	2 cut(s)	135, 752
BstC8I	GCNNGC	3 cut(s)	334, 553, 714
BstDEI	CTNAG	3 cut(s)	377, 414, 798
BstDSI	CCRYGG	2 cut(s)	689, 765
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	3 cut(s)	172, 510, 571
BstMAI	GTCTC	4 cut(s)	242, 522, 607, 765
BstMBI	GATC	3 cut(s)	169, 507, 568
BstMCI	CGRYCG	1 cut(s)	791
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 17, 111, 120, 348, 378, 685, 793, 844
BstNI	CCWGG	1 cut(s)	781
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	1 cut(s)	779
BstV1I	GCAGC	5 cut(s)	23, 120, 123, 335, 771
BstV2I	GAAGAC	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	798
BsuRI	GGCC	5 cut(s)	20, 84, 688, 729, 764
BtgI	CCRYGG	2 cut(s)	689, 765
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	3 cut(s)	334, 553, 714
CciI	TCATGA	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	686, 728
CseI	GACGC	2 cut(s)	143, 760
Csp6I	GTAC	1 cut(s)	706
CspCI	CAANNNNNGTGG	2 cut(s)	701, 736
CviAII	CATG	8 cut(s)	58, 355, 403, 661, 682, 690, 709, 853
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	3 cut(s)	377, 414, 798
DpnI	GATC	3 cut(s)	171, 509, 570
DpnII	GATC	3 cut(s)	169, 507, 568
EaeI	YGGCCR	3 cut(s)	18, 82, 762
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	766
Eco130I	CCWWGG	1 cut(s)	689
Eco57I	CTGAAG	3 cut(s)	426, 508, 609
Eco81I	CCTNAGG	1 cut(s)	798
Eco88I	CYCGRG	2 cut(s)	27, 546
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	779
EcoT14I	CCWWGG	1 cut(s)	689
EcoT22I	ATGCAT	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	689
Esp3I	CGTCTC	2 cut(s)	242, 522
FaeI	CATG	8 cut(s)	61, 358, 406, 664, 685, 693, 712, 856
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	8 cut(s)	57, 354, 402, 660, 681, 689, 708, 852
FauI	CCCGC	1 cut(s)	311
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	8 cut(s)	12, 42, 106, 109, 112, 349, 648, 785
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	8 cut(s)	12, 42, 106, 109, 112, 349, 648, 785
FspBI	CTAG	3 cut(s)	237, 245, 827
GluI	GCNGC	8 cut(s)	12, 42, 106, 109, 112, 349, 648, 785
HaeIII	GGCC	5 cut(s)	20, 84, 688, 729, 764
HapII	CCGG	7 cut(s)	17, 54, 95, 165, 343, 369, 431
HgaI	GACGC	2 cut(s)	143, 760
Hin1I	GRCGYC	2 cut(s)	135, 752
Hin1II	CATG	8 cut(s)	61, 358, 406, 664, 685, 693, 712, 856
HinfI	GANTC	2 cut(s)	773, 803
HpaII	CCGG	7 cut(s)	17, 54, 95, 165, 343, 369, 431
HphI	GGTGA	5 cut(s)	292, 420, 481, 511, 517
Hpy166II	GTNNAC	2 cut(s)	428, 472
Hpy188I	TCNGA	1 cut(s)	527
Hpy188III	TCNNGA	7 cut(s)	29, 95, 173, 245, 355, 444, 538
Hpy8I	GTNNAC	2 cut(s)	428, 472
Hpy99I	CGWCG	2 cut(s)	119, 754
HpyAV	CCTTC	4 cut(s)	277, 450, 484, 658
HpyCH4III	ACNGT	2 cut(s)	398, 817
HpyCH4V	TGCA	8 cut(s)	408, 619, 660, 679, 712, 735, 838, 852
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 17, 111, 120, 348, 378, 685, 793, 844
HpyF3I	CTNAG	3 cut(s)	377, 414, 798
Hsp92I	GRCGYC	2 cut(s)	135, 752
Hsp92II	CATG	8 cut(s)	61, 358, 406, 664, 685, 693, 712, 856
Kpn2I	TCCGGA	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	169, 507, 568
LmnI	GCTCC	2 cut(s)	19, 345
Lsp1109I	GCAGC	5 cut(s)	23, 120, 123, 335, 771
LweI	GCATC	1 cut(s)	798
MaeI	CTAG	3 cut(s)	237, 245, 827
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	3 cut(s)	171, 509, 570
MbiI	CCGCTC	2 cut(s)	26, 336
MboI	GATC	3 cut(s)	169, 507, 568
MboII	GAAGA	3 cut(s)	89, 164, 167
MluCI	AATT	3 cut(s)	475, 533, 633
MlyI	GAGTC	2 cut(s)	767, 812
Mph1103I	ATGCAT	1 cut(s)	662
MroI	TCCGGA	1 cut(s)	94
MseI	TTAA	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	7 cut(s)	17, 54, 95, 165, 343, 369, 431
MspR9I	CCNGG	1 cut(s)	781
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	781
MwoI	GCNNNNNNNGC	9 cut(s)	11, 17, 111, 120, 348, 378, 685, 793, 844
NcoI	CCATGG	1 cut(s)	689
NdeII	GATC	3 cut(s)	169, 507, 568
NlaIII	CATG	8 cut(s)	61, 358, 406, 664, 685, 693, 712, 856
NlaIV	GGNNCC	3 cut(s)	71, 687, 730
NmeAIII	GCCGAG	1 cut(s)	705
NsiI	ATGCAT	1 cut(s)	662
NspI	RCATGY	1 cut(s)	712
PaeR7I	CTCGAG	1 cut(s)	27
PagI	TCATGA	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 564
PctI	GAATGC	1 cut(s)	451
PkrI	GCNGC	8 cut(s)	13, 43, 107, 110, 113, 350, 649, 786
PleI	GAGTC	2 cut(s)	767, 811
PpsI	GAGTC	2 cut(s)	767, 811
Psp6I	CCWGG	1 cut(s)	779
PspGI	CCWGG	1 cut(s)	779
PspN4I	GGNNCC	3 cut(s)	71, 687, 730
PspPI	GGNCC	2 cut(s)	686, 728
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	8 cut(s)	12, 42, 106, 109, 112, 349, 648, 785
Sau3AI	GATC	3 cut(s)	169, 507, 568
Sau96I	GGNCC	2 cut(s)	686, 728
SchI	GAGTC	2 cut(s)	767, 812
ScrFI	CCNGG	1 cut(s)	781
SetI	ASST	7 cut(s)	16, 191, 223, 227, 350, 501, 519
SfaNI	GCATC	1 cut(s)	798
Sfr274I	CTCGAG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	3 cut(s)	475, 533, 633
SsiI	CCGC	9 cut(s)	24, 41, 105, 278, 295, 318, 336, 648, 777
SspMI	CTAG	3 cut(s)	237, 245, 827
StyD4I	CCNGG	1 cut(s)	779
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	2 cut(s)	398, 817
TaqI	TCGA	5 cut(s)	28, 75, 537, 749, 806
TaqII	GACCGA	1 cut(s)	805
TasI	AATT	3 cut(s)	475, 533, 633
TatI	WGTACW	1 cut(s)	705
TauI	GCSGC	3 cut(s)	44, 108, 650
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	5 cut(s)	11, 108, 111, 348, 784
TspDTI	ATGAA	3 cut(s)	165, 444, 677
TspGWI	ACGGA	2 cut(s)	132, 320
TspRI	CASTG	1 cut(s)	403
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	533, 633
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	1 cut(s)	712
XhoI	CTCGAG	1 cut(s)	27
XspI	CTAG	3 cut(s)	237, 245, 827
Zsp2I	ATGCAT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.