FvH4_3g09070

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003387
Physical Location & Seq
Reverse (-)
5306999 .. 5309331
2333 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09070.t1

Sequence Viewer

Length: 885 bp
ATGGCCAGAATTCCGGCGAGCACTGCACGGGAGCTGTTGGCAGCGAGCTTCTCCGGCATGGTTTTCGGGTTTCTCGAAGACGGAGGTCAAGAGTTTGAGCAGAGTTGTAGCAGCAGCGATGGGAGTAGTCAAGAAACTGAGGCAATGTTTGACATGGAGGATGATCAAGAGGATGCCGGAGAGGACGAGAAGGATAAGAAGTTTTGGGAGAACCAGAACCAGATTTTACAGGCGACGTTGTGCAGGACTAGTTCTCTAGAGACGAAGATTAGGAGCGTGACGAAGGTTGCGGTGAAGGAGTCGGGGGAAGCCGTGTGCGGTTGTGGGAAGGAGTCGAGTGGTTGCCGGAGTTGCCTTATGAGGGAAGTTTCTGGCAGGCTTTGCAATGCTGGTTACAACAGTGCCATATGCAAGTCCCAGTGGAGGAGTTCGCCGGATATTCCTTCAGGAGAGCACACATTTTTGGATGTAGTGGACAATTCAAGCTCCAGAAAAGGAGAGGTGAGGGTGATCATAGAACTCAACTTCAGAGCCGAGTTTGAGATGGCGAGAGCAAACGATGAATACAACAGATTGGTGAAACGACTACCCGAAATCTTCGTCGGCAAGGTCGAGAGACTTCAAAACTTGATCAAGATTTTGTGTTCGGCTGCCAAGAAGTGTATGAAGGAGAAGAAAATGCATATGGGGCCGTGGAGAAAGCAGAAGTACATGCAAGCTAAATGGCTTGGTGCGTGCAAGAGAACGATCGCGACGTCAACACCGCCGTTGTCAGTGGGGCAATCGGAGCGGCTGCGTCTCAGGCCGAAGGCATCGATGCTAACTGTTGATTTGCTAGGGGAGATGATGCCTAATATGCATTGTGCAGCTGTTGCAGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

295

Amino Acids

32.72

Weight (kDa)

7.93

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 19 - 248 2e-80 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 758
AccBSI CCGCTC 1 cut(s) 790
AccII CGCG 1 cut(s) 752
AciI CCGC 4 cut(s) 290, 318, 764, 790
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 429, 511
AcyI GRCGYC 1 cut(s) 755
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 2 cut(s) 361, 423
AgsI TTSAA 2 cut(s) 483, 623
AhlI ACTAGT 1 cut(s) 248
AluBI AGCT 5 cut(s) 34, 48, 486, 719, 869
AluI AGCT 5 cut(s) 34, 48, 486, 719, 869
Alw21I GWGCWC 2 cut(s) 23, 456
Alw26I GTCTC 3 cut(s) 254, 610, 803
AoxI GGCC 3 cut(s) 3, 689, 803
ApeKI GCWGC 6 cut(s) 41, 111, 114, 650, 793, 866
ApoI RAATTY 1 cut(s) 9
ArsI GACNNNNNNTTYG 2 cut(s) 585, 617
AspS9I GGNCC 1 cut(s) 689
AsuHPI GGTGA 4 cut(s) 304, 514, 520, 589
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 23, 456
BbvI GCAGC 6 cut(s) 53, 123, 126, 637, 780, 878
BccI CCATC 2 cut(s) 113, 538
BceAI ACGGC 3 cut(s) 296, 676, 751
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BclI TGATCA 3 cut(s) 163, 510, 630
BcoDI GTCTC 3 cut(s) 254, 610, 803
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 3 cut(s) 249, 257, 836
BisI GCNGC 7 cut(s) 42, 112, 115, 651, 791, 794, 867
BlsI GCNGC 7 cut(s) 43, 113, 116, 652, 792, 795, 868
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 1 cut(s) 690
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 4 cut(s) 163, 807, 821, 837
BmuI ACTGGG 1 cut(s) 412
BoxI GACNNNNGTC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 472
Bsa29I ATCGAT 1 cut(s) 815
BsaHI GRCGYC 1 cut(s) 755
BsaJI CCNNGG 1 cut(s) 692
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 423
Bse1I ACTGG 1 cut(s) 418
Bse3DI GCAATG 2 cut(s) 150, 391
BseCI ATCGAT 1 cut(s) 815
BseDI CCNNGG 1 cut(s) 692
BseGI GGATG 3 cut(s) 166, 178, 472
BseLI CCNNNNNNNGG 2 cut(s) 361, 423
BseMI GCAATG 2 cut(s) 150, 391
BseMII CTCAG 2 cut(s) 129, 814
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 1 cut(s) 439
BseXI GCAGC 6 cut(s) 53, 123, 126, 637, 780, 878
BsgI GTGCAG 3 cut(s) 9, 262, 885
Bsh1236I CGCG 1 cut(s) 752
Bsh1285I CGRYCG 1 cut(s) 750
BshFI GGCC 3 cut(s) 5, 691, 805
BshVI ATCGAT 1 cut(s) 815
BsiEI CGRYCG 1 cut(s) 750
BsiHKAI GWGCWC 2 cut(s) 23, 456
BsiSI CCGG 5 cut(s) 14, 54, 177, 346, 434
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 2 cut(s) 361, 423
BsmAI GTCTC 3 cut(s) 254, 610, 803
BsmBI CGTCTC 2 cut(s) 254, 803
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 3 cut(s) 5, 691, 805
Bsp1286I GDGCHC 2 cut(s) 23, 456
Bsp143I GATC 4 cut(s) 163, 510, 630, 747
Bsp68I TCGCGA 1 cut(s) 752
BspACI CCGC 4 cut(s) 290, 318, 764, 790
BspANI GGCC 3 cut(s) 5, 691, 805
BspCNI CTCAG 2 cut(s) 130, 813
BspDI ATCGAT 1 cut(s) 815
BspFNI CGCG 1 cut(s) 752
BspLI GGNNCC 1 cut(s) 690
BsrBI CCGCTC 1 cut(s) 790
BsrDI GCAATG 2 cut(s) 150, 391
BsrI ACTGG 1 cut(s) 418
BssECI CCNNGG 1 cut(s) 692
BssMI GATC 4 cut(s) 163, 510, 630, 747
BssNI GRCGYC 1 cut(s) 755
Bst4CI ACNGT 2 cut(s) 401, 826
BstACI GRCGYC 1 cut(s) 755
BstAPI GCANNNNNTGC 2 cut(s) 381, 872
BstC8I GCNNGC 5 cut(s) 19, 46, 377, 717, 736
BstDEI CTNAG 2 cut(s) 138, 800
BstDSI CCRYGG 1 cut(s) 692
BstF5I GGATG 3 cut(s) 166, 178, 472
BstFNI CGCG 1 cut(s) 752
BstKTI GATC 4 cut(s) 166, 513, 633, 750
BstMAI GTCTC 3 cut(s) 254, 610, 803
BstMBI GATC 4 cut(s) 163, 510, 630, 747
BstMCI CGRYCG 1 cut(s) 750
BstMWI GCNNNNNNNGC 9 cut(s) 23, 54, 351, 381, 688, 787, 802, 856, 872
BstNSI RCATGY 1 cut(s) 715
BstPAI GACNNNNGTC 1 cut(s) 84
BstUI CGCG 1 cut(s) 752
BstV1I GCAGC 6 cut(s) 53, 123, 126, 637, 780, 878
BstV2I GAAGAC 1 cut(s) 84
Bsu15I ATCGAT 1 cut(s) 815
BsuRI GGCC 3 cut(s) 5, 691, 805
BsuTUI ATCGAT 1 cut(s) 815
BtgI CCRYGG 1 cut(s) 692
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 3 cut(s) 166, 178, 472
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 4 cut(s) 21, 406, 425, 780
BtuMI TCGCGA 1 cut(s) 752
Cac8I GCNNGC 5 cut(s) 19, 46, 377, 717, 736
Cfr13I GGNCC 1 cut(s) 689
ClaI ATCGAT 1 cut(s) 815
CseI GACGC 1 cut(s) 785
Csp6I GTAC 1 cut(s) 709
CviAII CATG 3 cut(s) 58, 154, 712
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 2 cut(s) 138, 800
DpnI GATC 4 cut(s) 165, 512, 632, 749
DpnII GATC 4 cut(s) 163, 510, 630, 747
EaeI YGGCCR 1 cut(s) 3
Eco57I CTGAAG 2 cut(s) 429, 511
EcoRI GAATTC 1 cut(s) 9
EcoT22I ATGCAT 2 cut(s) 684, 861
Esp3I CGTCTC 2 cut(s) 254, 803
FaeI CATG 3 cut(s) 61, 157, 715
FaqI GGGAC 1 cut(s) 400
FatI CATG 3 cut(s) 57, 153, 711
FauNDI CATATG 2 cut(s) 407, 684
FbaI TGATCA 3 cut(s) 163, 510, 630
Fnu4HI GCNGC 7 cut(s) 42, 112, 115, 651, 791, 794, 867
FokI GGATG 3 cut(s) 173, 185, 479
Fsp4HI GCNGC 7 cut(s) 42, 112, 115, 651, 791, 794, 867
FspBI CTAG 3 cut(s) 249, 257, 836
GluI GCNGC 7 cut(s) 42, 112, 115, 651, 791, 794, 867
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 3 cut(s) 5, 691, 805
HapII CCGG 5 cut(s) 14, 54, 177, 346, 434
HgaI GACGC 1 cut(s) 785
Hin1I GRCGYC 1 cut(s) 755
Hin1II CATG 3 cut(s) 61, 157, 715
HincII GTYRAC 1 cut(s) 759
HindII GTYRAC 1 cut(s) 759
HinfI GANTC 2 cut(s) 299, 332
HpaII CCGG 5 cut(s) 14, 54, 177, 346, 434
HphI GGTGA 4 cut(s) 304, 514, 520, 589
Hpy166II GTNNAC 2 cut(s) 475, 759
Hpy188I TCNGA 2 cut(s) 530, 787
Hpy8I GTNNAC 2 cut(s) 475, 759
Hpy99I CGWCG 3 cut(s) 238, 605, 757
HpyAV CCTTC 7 cut(s) 184, 277, 289, 322, 453, 661, 802
HpyCH4III ACNGT 2 cut(s) 401, 826
HpyCH4IV ACGT 2 cut(s) 236, 755
HpyF10VI GCNNNNNNNGC 9 cut(s) 23, 54, 351, 381, 688, 787, 802, 856, 872
HpyF3I CTNAG 2 cut(s) 138, 800
HpySE526I ACGT 2 cut(s) 236, 755
Hsp92I GRCGYC 1 cut(s) 755
Hsp92II CATG 3 cut(s) 61, 157, 715
Ksp22I TGATCA 3 cut(s) 163, 510, 630
Kzo9I GATC 4 cut(s) 163, 510, 630, 747
LmnI GCTCC 4 cut(s) 31, 273, 491, 787
Lsp1109I GCAGC 6 cut(s) 53, 123, 126, 637, 780, 878
LweI GCATC 4 cut(s) 163, 807, 821, 837
MaeI CTAG 3 cut(s) 249, 257, 836
MaeII ACGT 2 cut(s) 236, 755
MaeIII GTNAC 2 cut(s) 277, 392
MalI GATC 4 cut(s) 165, 512, 632, 749
MbiI CCGCTC 1 cut(s) 790
MboI GATC 4 cut(s) 163, 510, 630, 747
MboII GAAGA 4 cut(s) 89, 277, 589, 685
MhlI GDGCHC 2 cut(s) 23, 456
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 9, 478
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 308, 341
MnlI CCTC 9 cut(s) 77, 133, 151, 163, 175, 354, 417, 493, 498
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 684, 861
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 869
MspI CCGG 5 cut(s) 14, 54, 177, 346, 434
MvnI CGCG 1 cut(s) 752
MwoI GCNNNNNNNGC 9 cut(s) 23, 54, 351, 381, 688, 787, 802, 856, 872
NdeI CATATG 2 cut(s) 407, 684
NdeII GATC 4 cut(s) 163, 510, 630, 747
NlaIII CATG 3 cut(s) 61, 157, 715
NlaIV GGNNCC 1 cut(s) 690
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 1 cut(s) 277
NruI TCGCGA 1 cut(s) 752
NsiI ATGCAT 2 cut(s) 684, 861
NspI RCATGY 1 cut(s) 715
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 609, 752
PkrI GCNGC 7 cut(s) 43, 113, 116, 652, 792, 795, 868
Ple19I CGATCG 1 cut(s) 750
PleI GAGTC 2 cut(s) 307, 340
PpsI GAGTC 2 cut(s) 307, 340
PshAI GACNNNNGTC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 690
PspPI GGNCC 1 cut(s) 689
PvuI CGATCG 1 cut(s) 750
PvuII CAGCTG 1 cut(s) 869
RruI TCGCGA 1 cut(s) 752
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
SatI GCNGC 7 cut(s) 42, 112, 115, 651, 791, 794, 867
Sau3AI GATC 4 cut(s) 163, 510, 630, 747
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 2 cut(s) 308, 341
SduI GDGCHC 2 cut(s) 23, 456
SfaNI GCATC 4 cut(s) 163, 807, 821, 837
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 2 cut(s) 9, 478
SsiI CCGC 4 cut(s) 290, 318, 764, 790
SspMI CTAG 3 cut(s) 249, 257, 836
TaaI ACNGT 2 cut(s) 401, 826
TaiI ACGT 2 cut(s) 239, 758
TaqI TCGA 4 cut(s) 75, 335, 612, 815
TasI AATT 2 cut(s) 9, 478
TatI WGTACW 1 cut(s) 708
TauI GCSGC 1 cut(s) 793
TscAI CASTG 4 cut(s) 28, 406, 425, 780
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 6 cut(s) 41, 111, 114, 650, 793, 866
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 2 cut(s) 576, 680
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 4 cut(s) 28, 406, 425, 780
XapI RAATTY 1 cut(s) 9
XbaI TCTAGA 1 cut(s) 256
XceI RCATGY 1 cut(s) 715
XspI CTAG 3 cut(s) 249, 257, 836
ZraI GACGTC 1 cut(s) 756
Zsp2I ATGCAT 2 cut(s) 684, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.