Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003387

Physical Location & Seq

Genomic Coordinates Reverse (-)

29537486 .. 29538623

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGTAGAGAAACTCCGGCCACCGCTAGAGAATTATTGGCGGCGAGTTTTTCCGGCATGGTTTTCGGGTTCCTCGAAGACTGCGATGAGTTCCCAGAAAATTACGGCAGCAGCACCGAAGGCTGCCAAGAAAATGAAGCCTACTTGTTAGATGAAGAGGAAGAAGCTGGAGATCAGGAGAAGGACATGAGGTTTTGGGATAACCAGCACCAACTTTTACAAGCTACGTTATGCAGGACTAGTTCTCTAGAGACGAGGATTAGGAGTTTGACAAGGGAGGTGGTGAAGGAGATACAGCAGTCGGGGATGGAGTGTGGTTGCGGGAAAACGATGGCGGGCGGTTGCTGGAGCTGTCTCTTGAGAGAAGTTTCCGGCAGACTTTGCAATGCTGGTCACAACAGTGCCATCTGCAAGTCTAACTGGAGGAGTTCACCGGATATTCCTTCAGGAGAGCACGCATTTTTGGATGTGGTGGACAATTCAAGGCTAAAGAAAGGAGAGGTGAGAGTGATCATAGAGCTGAACTTCAGAGCCGAATTCGAGATGGCTCGAGCAGGCGACCAATACAACAATCTAGTTCAAAAACTCCCCGAAGTGTTTGTTGGCAAAGTTGAAAGACTGCAAAGCCTGATAAAAATTTTATGTTCTGCTGCAAAGAAATGCATGAAGGAAAAGAAAATGCACATGGGGCCATGGAGGAAGCAGAAGTACATGCAAGCAAAGTGGCTTAGCCCCTGCAAAAGAACAACATTGACACCTGTTTTGGCCGTGGGAGACTCCTCCCGGCTGCGACCGAAGCCTAAGGAGTCGATGTTAACCGTAGATTTGCTAGAGATGATGCCTAACAGGCATTGCATGACAGCAGTTCAAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

293

Amino Acids

32.98

Weight (kDa)

6.94

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20670 AT4G32480
fragaria_vesca	FvH4_1g11850 FvH4_3g09070 FvH4_6g26340
malus_domestica	MD05G1338400.v1.1 MD06G1071700.v1.1 MD09G1246100.v1.1 MD10G1293600.v1.1 MD17G1238700.v1.1
prunus_persica	Prupe.3G131700_v2.0.a1 Prupe.4G048200_v2.0.a1
pyrus_communis	pycom05g28980 pycom09g16360 pycom10g24550 pycom17g24280
rosa_chinensis	RchiOBHm_Chr2g0126781 RchiOBHm_Chr5g0008561
rosa_laevigata	RLG00000018922 RLG00000031583
rosa_multiflora	Rmu_sc0000007.1_g000008 Rmu_sc0001665.1_g000018
rosa_roxburghii	Rroxscaffold_1G00067980 Rroxscaffold_2G00116980
rosa_rugosa	Rorug02G0264700 Rorug04G0436700
rosa_samantha	Rh2AG321900 Rh2BG329800 Rh2CG309700 Rh2DG349100 Rh5AG065500 Rh5BG063000 Rh5CG073100 Rh5DG063200
rosa_wichuraiana	Rw2G026090 Rw5G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	24, 41, 321, 335, 339
AcoI	YGGCCR	2 cut(s)	18, 765
AcsI	RAATTY	2 cut(s)	536, 636
AcuI	CTGAAG	2 cut(s)	429, 511
AfaI	GTAC	1 cut(s)	710
AgsI	TTSAA	4 cut(s)	483, 581, 614, 869
AhlI	ACTAGT	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	4 cut(s)	167, 224, 351, 520
AluI	AGCT	4 cut(s)	167, 224, 351, 520
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	3 cut(s)	245, 359, 768
Ama87I	CYCGRG	1 cut(s)	549
AoxI	GGCC	3 cut(s)	18, 689, 765
ApeKI	GCWGC	5 cut(s)	108, 111, 123, 650, 787
ApoI	RAATTY	2 cut(s)	536, 636
ArsI	GACNNNNNNTTYG	2 cut(s)	745, 777
AspS9I	GGNCC	1 cut(s)	689
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	3 cut(s)	295, 423, 514
AvaI	CYCGRG	1 cut(s)	549
AxyI	CCTNAGG	1 cut(s)	801
BaeI	ACNNNNGTAYC	2 cut(s)	284, 317
BarI	GAAGNNNNNNTAC	2 cut(s)	692, 724
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	5 cut(s)	110, 120, 123, 637, 774
BccI	CCATC	4 cut(s)	301, 325, 413, 538
BceAI	ACGGC	2 cut(s)	121, 752
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	3 cut(s)	245, 359, 768
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	5 cut(s)	27, 240, 248, 575, 830
BglI	GCCNNNNNGGC	1 cut(s)	847
BisI	GCNGC	6 cut(s)	42, 109, 112, 124, 651, 788
BlpI	GCTNAGC	1 cut(s)	728
BlsI	GCNGC	6 cut(s)	43, 110, 113, 125, 652, 789
Bme1390I	CCNGG	1 cut(s)	784
BmeT110I	CYCGRG	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	2 cut(s)	71, 690
BmrFI	CCNGG	1 cut(s)	784
BmsI	GCATC	1 cut(s)	828
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	3 cut(s)	189, 367, 442
Bpu1102I	GCTNAGC	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	692, 768
BsaWI	WCCGGW	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bse1I	ACTGG	1 cut(s)	425
Bse21I	CCTNAGG	1 cut(s)	801
Bse3DI	GCAATG	2 cut(s)	391, 850
BseDI	CCNNGG	2 cut(s)	692, 768
BseGI	GGATG	2 cut(s)	312, 472
BseMI	GCAATG	2 cut(s)	391, 850
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	2 cut(s)	439, 769
BseXI	GCAGC	5 cut(s)	110, 120, 123, 637, 774
Bsh1285I	CGRYCG	1 cut(s)	794
BshFI	GGCC	3 cut(s)	20, 691, 767
BsiEI	CGRYCG	1 cut(s)	794
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	5 cut(s)	17, 54, 372, 434, 784
BsmAI	GTCTC	3 cut(s)	245, 359, 768
BsmBI	CGTCTC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	20, 691, 767
BsoBI	CYCGRG	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	172, 510
Bsp1720I	GCTNAGC	1 cut(s)	728
Bsp19I	CCATGG	1 cut(s)	692
BspACI	CCGC	5 cut(s)	24, 41, 321, 335, 339
BspANI	GGCC	3 cut(s)	20, 691, 767
BspLI	GGNNCC	2 cut(s)	71, 690
BsrDI	GCAATG	2 cut(s)	391, 850
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	692, 768
BssMI	GATC	2 cut(s)	172, 510
BssT1I	CCWWGG	1 cut(s)	692
Bst4CI	ACNGT	2 cut(s)	401, 820
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	381
BstC8I	GCNNGC	4 cut(s)	337, 456, 556, 717
BstDEI	CTNAG	2 cut(s)	728, 801
BstDSI	CCRYGG	2 cut(s)	692, 768
BstF5I	GGATG	2 cut(s)	312, 472
BstKTI	GATC	2 cut(s)	175, 513
BstMAI	GTCTC	3 cut(s)	245, 359, 768
BstMBI	GATC	2 cut(s)	172, 510
BstMCI	CGRYCG	1 cut(s)	794
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 381, 688, 796, 847
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	782
BstV1I	GCAGC	5 cut(s)	110, 120, 123, 637, 774
BstV2I	GAAGAC	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	801
BsuRI	GGCC	3 cut(s)	20, 691, 767
BtgI	CCRYGG	2 cut(s)	692, 768
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	312, 472
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	4 cut(s)	337, 456, 556, 717
Cfr13I	GGNCC	1 cut(s)	689
Csp6I	GTAC	1 cut(s)	709
CspCI	CAANNNNNGTGG	4 cut(s)	261, 296, 704, 739
CviAII	CATG	7 cut(s)	58, 187, 664, 685, 693, 712, 856
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	2 cut(s)	728, 801
DpnI	GATC	2 cut(s)	174, 512
DpnII	GATC	2 cut(s)	172, 510
EaeI	YGGCCR	2 cut(s)	18, 765
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	692
Eco57I	CTGAAG	2 cut(s)	429, 511
Eco81I	CCTNAGG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	549
EcoRI	GAATTC	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	692
EcoT22I	ATGCAT	1 cut(s)	665
ErhI	CCWWGG	1 cut(s)	692
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	7 cut(s)	61, 190, 667, 688, 696, 715, 859
FatI	CATG	7 cut(s)	57, 186, 663, 684, 692, 711, 855
FauI	CCCGC	2 cut(s)	314, 328
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	6 cut(s)	42, 109, 112, 124, 651, 788
FokI	GGATG	2 cut(s)	319, 479
Fsp4HI	GCNGC	6 cut(s)	42, 109, 112, 124, 651, 788
FspBI	CTAG	5 cut(s)	27, 240, 248, 575, 830
GluI	GCNGC	6 cut(s)	42, 109, 112, 124, 651, 788
GsuI	CTGGAG	3 cut(s)	189, 367, 442
HaeIII	GGCC	3 cut(s)	20, 691, 767
HapII	CCGG	5 cut(s)	17, 54, 372, 434, 784
Hin1II	CATG	7 cut(s)	61, 190, 667, 688, 696, 715, 859
HincII	GTYRAC	1 cut(s)	816
HindII	GTYRAC	1 cut(s)	816
HinfI	GANTC	2 cut(s)	776, 806
HpaI	GTTAAC	1 cut(s)	816
HpaII	CCGG	5 cut(s)	17, 54, 372, 434, 784
HphI	GGTGA	3 cut(s)	295, 423, 514
Hpy166II	GTNNAC	3 cut(s)	431, 475, 816
Hpy188I	TCNGA	1 cut(s)	530
Hpy188III	TCNNGA	5 cut(s)	176, 248, 358, 447, 541
Hpy8I	GTNNAC	3 cut(s)	431, 475, 816
HpyAV	CCTTC	5 cut(s)	113, 175, 280, 453, 661
HpyCH4III	ACNGT	2 cut(s)	401, 820
HpyCH4IV	ACGT	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 381, 688, 796, 847
HpyF3I	CTNAG	2 cut(s)	728, 801
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	7 cut(s)	61, 190, 667, 688, 696, 715, 859
Ksp22I	TGATCA	1 cut(s)	510
KspAI	GTTAAC	1 cut(s)	816
Kzo9I	GATC	2 cut(s)	172, 510
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	5 cut(s)	110, 120, 123, 637, 774
LweI	GCATC	1 cut(s)	828
MaeI	CTAG	5 cut(s)	27, 240, 248, 575, 830
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	2 cut(s)	174, 512
MboI	GATC	2 cut(s)	172, 510
MboII	GAAGA	3 cut(s)	89, 167, 173
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	5 cut(s)	32, 100, 478, 536, 636
MlyI	GAGTC	2 cut(s)	770, 815
MnlI	CCTC	9 cut(s)	83, 151, 183, 249, 271, 417, 493, 690, 790
Mph1103I	ATGCAT	1 cut(s)	665
MseI	TTAA	1 cut(s)	815
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	5 cut(s)	17, 54, 372, 434, 784
MspR9I	CCNGG	1 cut(s)	784
MwoI	GCNNNNNNNGC	5 cut(s)	120, 381, 688, 796, 847
NciI	CCSGG	1 cut(s)	784
NcoI	CCATGG	1 cut(s)	692
NdeII	GATC	2 cut(s)	172, 510
NlaIII	CATG	7 cut(s)	61, 190, 667, 688, 696, 715, 859
NlaIV	GGNNCC	2 cut(s)	71, 690
NmuCI	GTSAC	1 cut(s)	392
NsiI	ATGCAT	1 cut(s)	665
NspI	RCATGY	1 cut(s)	715
OliI	CACNNNNGTG	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 81
PkrI	GCNGC	6 cut(s)	43, 110, 113, 125, 652, 789
PleI	GAGTC	2 cut(s)	770, 814
PpsI	GAGTC	2 cut(s)	770, 814
PspN4I	GGNNCC	2 cut(s)	71, 690
PspPI	GGNCC	1 cut(s)	689
PspXI	VCTCGAGB	1 cut(s)	549
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	815
SatI	GCNGC	6 cut(s)	42, 109, 112, 124, 651, 788
Sau3AI	GATC	2 cut(s)	172, 510
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	2 cut(s)	770, 815
ScrFI	CCNGG	1 cut(s)	784
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	9 cut(s)	169, 194, 226, 230, 282, 353, 504, 522, 760
SfaNI	GCATC	1 cut(s)	828
Sfr274I	CTCGAG	1 cut(s)	549
SlaI	CTCGAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	358, 549
SmoI	CTYRAG	2 cut(s)	358, 549
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	5 cut(s)	32, 100, 478, 536, 636
SsiI	CCGC	5 cut(s)	24, 41, 321, 335, 339
SspMI	CTAG	5 cut(s)	27, 240, 248, 575, 830
StyD4I	CCNGG	1 cut(s)	782
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	2 cut(s)	401, 820
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	4 cut(s)	75, 540, 550, 809
TaqII	GACCGA	1 cut(s)	808
TasI	AATT	5 cut(s)	32, 100, 478, 536, 636
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	815
Tru9I	TTAA	1 cut(s)	815
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	5 cut(s)	108, 111, 123, 650, 787
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	150, 168, 680
TspRI	CASTG	1 cut(s)	406
XapI	RAATTY	2 cut(s)	536, 636
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	715
XhoI	CTCGAG	1 cut(s)	549
XspI	CTAG	5 cut(s)	27, 240, 248, 575, 830
Zsp2I	ATGCAT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.