RchiOBHm_Chr2g0126781

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003387
Physical Location & Seq
Forward (+)
41336287 .. 41337653
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49873

Sequence Viewer

Length: 873 bp
ATGCCCGGAGTAATGCTTAGAATTCCGGTTACTCGCCTGAGCGCCGACGATATTTTGGAATTTCCCGGCAGAGCTGCCAGTCTTTCTGACATGGTTCTGGGGTTTATCGAGGAACCTGCCACGGATGCCTACCCGGGCAATATCACGTCAGGCTCCGATGAGGAAGAGGAAGATGAAGCTTCTGTGGAGGAGAACAAGGCATTTTGGGAGGAACAACACCAACTTCTCCAAGCAACGTTGTGTAGAAGCAGTGGCGTAGAAAAGAAAATTCGACAAGCCACCAAGGAGGCGCTGAGAGAAACTATGAATAGCATGTATTGCGTCTGTTCGAGGGCGGTGGCCGGAGACTGCCGGAATTGTTTGCGAAGGGAAATATGCAATCGCCTTATTAGTTTAGGTTACAACTGTGCCATTTGCAAATCCAAATGGAGAAGCTCAGCAAATATCCCATCAGCACACTTTTTGGAAGTGCTAGACAATTCGGATACAAAGAGAGGGGAGATTAGGGTAGTGATCGAGCTCAATTTCCGAGCAGAGTTTGAGATGGCTAGAGCTAGCCAAGACTACAACCGTTTAATTAGCTTTTTGCCGGAAGTCTTTGTCGGGAAAGCCGAAAGACTACGAGTCTTGATCAAAATTTTGTGCAGCGCGGCTAAAAAATGTATGAAAGAGAAGAAAATGCATTTGGGACCTTGGAGGAAGCACAAGTACATGCAAGCTAAGTGGCTTGGAACCTTTGAGCGATCAACTCCGGGATCGTTACCGGTCGGAGGATATAGAAACCGGCCACCGAAGCCGAGGGCATCCATGTTGACCTTCGACTTGTCCGAGGCTATGCCCGGCTTGCATTGCACGGCAGTTGAGGTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

290

Amino Acids

32.7

Weight (kDa)

8.45

Isoelectric Point (pI)

59.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 29 - 248 2.1e-71 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
AccII CGCG 1 cut(s) 650
AciI CCGC 2 cut(s) 335, 650
AclI AACGTT 1 cut(s) 236
AclWI GGATC 1 cut(s) 763
AcoI YGGCCR 2 cut(s) 339, 785
AcsI RAATTY 4 cut(s) 21, 59, 267, 636
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 1 cut(s) 770
AgeI ACCGGT 1 cut(s) 763
AhdI GACNNNNNGTC 1 cut(s) 623
AjiI CACGTC 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 7 cut(s) 74, 179, 435, 520, 554, 582, 719
AluI AGCT 7 cut(s) 74, 179, 435, 520, 554, 582, 719
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 763
Ama87I CYCGRG 1 cut(s) 133
AoxI GGCC 2 cut(s) 339, 785
ApeKI GCWGC 2 cut(s) 74, 645
ApoI RAATTY 4 cut(s) 21, 59, 267, 636
AsiGI ACCGGT 1 cut(s) 763
AspLEI GCGC 3 cut(s) 44, 292, 650
AspS9I GGNCC 1 cut(s) 689
AsuC2I CCSGG 6 cut(s) 6, 66, 134, 135, 753, 840
AsuNHI GCTAGC 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 689
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 692, 724
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 2 cut(s) 61, 657
BccI CCATC 2 cut(s) 457, 538
BceAI ACGGC 1 cut(s) 870
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciVI GTATCC 1 cut(s) 478
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 6 cut(s) 6, 66, 134, 135, 753, 840
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 3 cut(s) 473, 549, 555
BfoI RGCGCY 2 cut(s) 45, 293
BfuAI ACCTGC 1 cut(s) 124
BfuI GTATCC 1 cut(s) 478
BisI GCNGC 3 cut(s) 75, 646, 651
BlpI GCTNAGC 1 cut(s) 436
BlsI GCNGC 3 cut(s) 76, 647, 652
Bme1390I CCNGG 6 cut(s) 6, 66, 134, 135, 753, 840
Bme18I GGWCC 1 cut(s) 689
BmeRI GACNNNNNGTC 1 cut(s) 623
BmeT110I CYCGRG 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 4 cut(s) 114, 154, 690, 733
BmrFI CCNGG 6 cut(s) 6, 66, 134, 135, 753, 840
BmsI GCATC 2 cut(s) 115, 812
BmtI GCTAGC 1 cut(s) 558
Bpu10I CCTNAGC 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 436
BpuMI CCSGG 6 cut(s) 6, 66, 134, 135, 753, 840
BsaJI CCNNGG 6 cut(s) 120, 133, 282, 692, 797, 828
BsaWI WCCGGW 2 cut(s) 25, 763
Bsc4I CCNNNNNNNGG 1 cut(s) 770
Bse118I RCCGGY 2 cut(s) 763, 783
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 847
BseDI CCNNGG 6 cut(s) 120, 133, 282, 692, 797, 828
BseGI GGATG 2 cut(s) 130, 803
BseLI CCNNNNNNNGG 1 cut(s) 770
BseMI GCAATG 1 cut(s) 847
BseMII CTCAG 3 cut(s) 29, 284, 450
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 61, 657
BsgI GTGCAG 1 cut(s) 664
Bsh1236I CGCG 1 cut(s) 650
Bsh1285I CGRYCG 1 cut(s) 768
BshFI GGCC 2 cut(s) 341, 787
BshTI ACCGGT 1 cut(s) 763
BsiEI CGRYCG 1 cut(s) 768
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 702
BslI CCNNNNNNNGG 1 cut(s) 770
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 702
BsnI GGCC 2 cut(s) 341, 787
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 4 cut(s) 513, 630, 743, 755
Bsp1720I GCTNAGC 1 cut(s) 436
BspACI CCGC 2 cut(s) 335, 650
BspANI GGCC 2 cut(s) 341, 787
BspCNI CTCAG 3 cut(s) 30, 285, 449
BspFNI CGCG 1 cut(s) 650
BspLI GGNNCC 4 cut(s) 114, 154, 690, 733
BspMI ACCTGC 1 cut(s) 124
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 1 cut(s) 763
BsrDI GCAATG 1 cut(s) 847
BsrFI RCCGGY 2 cut(s) 763, 783
BsrI ACTGG 1 cut(s) 78
BssAI RCCGGY 2 cut(s) 763, 783
BssECI CCNNGG 6 cut(s) 120, 133, 282, 692, 797, 828
BssMI GATC 4 cut(s) 513, 630, 743, 755
BssT1I CCWWGG 2 cut(s) 282, 692
Bst4CI ACNGT 2 cut(s) 407, 572
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 318
BstC8I GCNNGC 3 cut(s) 556, 717, 845
BstDEI CTNAG 5 cut(s) 17, 38, 293, 436, 720
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 2 cut(s) 130, 803
BstFNI CGCG 1 cut(s) 650
BstH2I RGCGCY 2 cut(s) 45, 293
BstHHI GCGC 3 cut(s) 44, 292, 650
BstKTI GATC 4 cut(s) 516, 633, 746, 758
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 4 cut(s) 513, 630, 743, 755
BstMCI CGRYCG 1 cut(s) 768
BstMWI GCNNNNNNNGC 5 cut(s) 125, 318, 793, 844, 849
BstNSI RCATGY 2 cut(s) 316, 715
BstSCI CCNGG 6 cut(s) 4, 64, 132, 133, 751, 838
BstUI CGCG 1 cut(s) 650
BstV1I GCAGC 2 cut(s) 61, 657
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 2 cut(s) 341, 787
BtgI CCRYGG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 2 cut(s) 130, 803
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 3 cut(s) 556, 717, 845
CfoI GCGC 3 cut(s) 44, 292, 650
Cfr10I RCCGGY 2 cut(s) 763, 783
Cfr13I GGNCC 1 cut(s) 689
Cfr9I CCCGGG 1 cut(s) 133
CseI GACGC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 709
CspAI ACCGGT 1 cut(s) 763
CspCI CAANNNNNGTGG 2 cut(s) 704, 739
CviAII CATG 4 cut(s) 91, 313, 712, 808
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 5 cut(s) 17, 38, 293, 436, 720
DpnI GATC 4 cut(s) 515, 632, 745, 757
DpnII GATC 4 cut(s) 513, 630, 743, 755
DriI GACNNNNNGTC 1 cut(s) 623
EaeI YGGCCR 2 cut(s) 339, 785
Eam1104I CTCTTC 1 cut(s) 159
Eam1105I GACNNNNNGTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 520
Eco130I CCWWGG 2 cut(s) 282, 692
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 689
Eco53kI GAGCTC 1 cut(s) 520
Eco88I CYCGRG 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 520
EcoO109I RGGNCCY 1 cut(s) 689
EcoRI GAATTC 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 282, 692
EcoT22I ATGCAT 1 cut(s) 684
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 282, 692
FaeI CATG 4 cut(s) 94, 316, 715, 811
FaiI YATR 9 cut(s) 92, 305, 314, 376, 665, 713, 777, 809, 836
FaqI GGGAC 1 cut(s) 702
FatI CATG 4 cut(s) 90, 312, 711, 807
FbaI TGATCA 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 75, 646, 651
FokI GGATG 2 cut(s) 137, 790
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 3 cut(s) 75, 646, 651
FspBI CTAG 3 cut(s) 473, 549, 555
GlaI GCGC 3 cut(s) 43, 291, 649
GluI GCNGC 3 cut(s) 75, 646, 651
HaeII RGCGCY 2 cut(s) 45, 293
HaeIII GGCC 2 cut(s) 341, 787
HgaI GACGC 1 cut(s) 310
HhaI GCGC 3 cut(s) 44, 292, 650
Hin1II CATG 4 cut(s) 94, 316, 715, 811
Hin6I GCGC 3 cut(s) 42, 290, 648
HinP1I GCGC 3 cut(s) 42, 290, 648
HincII GTYRAC 1 cut(s) 813
HindII GTYRAC 1 cut(s) 813
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 1 cut(s) 624
Hpy166II GTNNAC 1 cut(s) 813
Hpy188I TCNGA 6 cut(s) 88, 157, 484, 530, 770, 829
Hpy188III TCNNGA 2 cut(s) 604, 628
Hpy8I GTNNAC 1 cut(s) 813
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 360, 826
HpyCH4III ACNGT 2 cut(s) 407, 572
HpyCH4IV ACGT 2 cut(s) 146, 236
HpyCH4V TGCA 7 cut(s) 378, 417, 645, 682, 715, 847, 852
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 318, 793, 844, 849
HpyF3I CTNAG 5 cut(s) 17, 38, 293, 436, 720
HpySE526I ACGT 2 cut(s) 146, 236
Hsp92II CATG 4 cut(s) 94, 316, 715, 811
HspAI GCGC 3 cut(s) 42, 290, 648
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 4 cut(s) 513, 630, 743, 755
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 2 cut(s) 61, 657
LweI GCATC 2 cut(s) 115, 812
MaeI CTAG 3 cut(s) 473, 549, 555
MaeII ACGT 2 cut(s) 146, 236
MaeIII GTNAC 3 cut(s) 28, 398, 759
MalI GATC 4 cut(s) 515, 632, 745, 757
MboI GATC 4 cut(s) 513, 630, 743, 755
MboII GAAGA 3 cut(s) 176, 182, 685
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 8 cut(s) 21, 59, 267, 355, 478, 523, 576, 636
MlyI GAGTC 1 cut(s) 633
MmeI TCCRAC 1 cut(s) 748
Mph1103I ATGCAT 1 cut(s) 684
MseI TTAA 1 cut(s) 575
MspR9I CCNGG 6 cut(s) 6, 66, 134, 135, 753, 840
MvnI CGCG 1 cut(s) 650
MwoI GCNNNNNNNGC 5 cut(s) 125, 318, 793, 844, 849
NciI CCSGG 6 cut(s) 6, 66, 134, 135, 753, 840
NdeII GATC 4 cut(s) 513, 630, 743, 755
NheI GCTAGC 1 cut(s) 554
NlaIII CATG 4 cut(s) 94, 316, 715, 811
NlaIV GGNNCC 4 cut(s) 114, 154, 690, 733
NmeAIII GCCGAG 1 cut(s) 822
NsiI ATGCAT 1 cut(s) 684
NspI RCATGY 2 cut(s) 316, 715
PcsI WCGNNNNNNNCGW 2 cut(s) 609, 825
PfoI TCCNGGA 1 cut(s) 751
PinAI ACCGGT 1 cut(s) 763
PkrI GCNGC 3 cut(s) 76, 647, 652
PleI GAGTC 1 cut(s) 632
PpsI GAGTC 1 cut(s) 632
PpuMI RGGWCCY 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 522
Psp1406I AACGTT 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 689
PspN4I GGNNCC 4 cut(s) 114, 154, 690, 733
PspPI GGNCC 1 cut(s) 689
PspPPI RGGWCCY 1 cut(s) 689
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
SacI GAGCTC 1 cut(s) 522
SaqAI TTAA 1 cut(s) 575
SatI GCNGC 3 cut(s) 75, 646, 651
Sau3AI GATC 4 cut(s) 513, 630, 743, 755
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 1 cut(s) 633
ScrFI CCNGG 6 cut(s) 6, 66, 134, 135, 753, 840
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 2 cut(s) 115, 812
SinI GGWCC 1 cut(s) 689
SmaI CCCGGG 1 cut(s) 135
Sse9I AATT 8 cut(s) 21, 59, 267, 355, 478, 523, 576, 636
SsiI CCGC 2 cut(s) 335, 650
SspMI CTAG 3 cut(s) 473, 549, 555
SstI GAGCTC 1 cut(s) 522
StyD4I CCNGG 6 cut(s) 4, 64, 132, 133, 751, 838
StyI CCWWGG 2 cut(s) 282, 692
TaaI ACNGT 2 cut(s) 407, 572
TaiI ACGT 2 cut(s) 149, 239
TaqI TCGA 5 cut(s) 108, 271, 329, 516, 819
TasI AATT 8 cut(s) 21, 59, 267, 355, 478, 523, 576, 636
TatI WGTACW 1 cut(s) 708
TauI GCSGC 1 cut(s) 653
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TscAI CASTG 1 cut(s) 256
TseI GCWGC 2 cut(s) 74, 645
TspDTI ATGAA 3 cut(s) 189, 320, 680
TspGWI ACGGA 1 cut(s) 137
TspMI CCCGGG 1 cut(s) 133
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 689
XapI RAATTY 4 cut(s) 21, 59, 267, 636
XceI RCATGY 2 cut(s) 316, 715
XmaI CCCGGG 1 cut(s) 133
XspI CTAG 3 cut(s) 473, 549, 555
Zsp2I ATGCAT 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.