MD17G1238700.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0003387
Physical Location & Seq
Reverse (-)
28844580 .. 28845450
871 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1238700.v1.1.491

Sequence Viewer

Length: 438 bp
ATGCCCCAGCAGCATACTTATTTGGAAGTGCTGGACAAAAGTTCAAAGAGAGGGGAGATTAGGGTTGTAATTGAGCTAAATTTCCGAGCTGAGTTCGAGATGGCAAGAGCTAGCGAAAACTACAACAGATTGATTAGCTGGTTGCCTGAAGTGTTTGTTGGAAAAGCCGATAGACTACGAGCTTTGATCAAGATTTTGTGCTGCGCTGCAAAAACATGTATGAAGGAGAAGAAAATGCACTTGGGACCATGGAGGAAGCACAAGTACGTGCAAGCCAAATGGTTTGGGACGTTGGAGCGGTCAACGCCAGGGTCGTTGCCTGTCGGATTTTCTCACGGGCCGCCGAAGCCTAAGGCCTCGATTTTGACCTTTGATTTGTTGGAGGCGGCTATGCCTGCAGGCTTGCATTGCGCTGGTACTGCAGTTGAAGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

146

Amino Acids

16.32

Weight (kDa)

9.51

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 4 - 100 4e-44 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 298
AciI CCGC 3 cut(s) 298, 341, 386
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 2 cut(s) 266, 418
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 2 cut(s) 45, 428
AjnI CCWGG 1 cut(s) 307
AjuI GAANNNNNNNTTGG 4 cut(s) 141, 173, 224, 256
AluBI AGCT 5 cut(s) 76, 89, 110, 138, 182
AluI AGCT 5 cut(s) 76, 89, 110, 138, 182
AoxI GGCC 2 cut(s) 338, 354
ApeKI GCWGC 3 cut(s) 10, 201, 206
ApoI RAATTY 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AspLEI GCGC 2 cut(s) 206, 413
AspS9I GGNCC 2 cut(s) 245, 338
AsuNHI GCTAGC 1 cut(s) 110
AvaII GGWCC 1 cut(s) 245
AxyI CCTNAGG 1 cut(s) 351
BaeI ACNNNNGTAYC 1 cut(s) 408
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BbvI GCAGC 3 cut(s) 22, 188, 193
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 186
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 2 cut(s) 396, 420
BisI GCNGC 5 cut(s) 11, 202, 207, 341, 387
BlsI GCNGC 5 cut(s) 12, 203, 208, 342, 388
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 245, 338
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 309
BmtI GCTAGC 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 248, 308
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 406
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 248, 308
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 22, 188, 193
BseYI CCCAGC 1 cut(s) 6
BshFI GGCC 2 cut(s) 340, 356
BslFI GGGAC 2 cut(s) 258, 301
BsmFI GGGAC 2 cut(s) 258, 301
BsnI GGCC 2 cut(s) 340, 356
Bsp143I GATC 1 cut(s) 186
Bsp19I CCATGG 1 cut(s) 248
BspACI CCGC 3 cut(s) 298, 341, 386
BspANI GGCC 2 cut(s) 340, 356
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 246
BspMAI CTGCAG 2 cut(s) 400, 424
BspOI GCTAGC 1 cut(s) 114
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 248, 308
BssMI GATC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 309
BstBAI YACGTR 1 cut(s) 268
BstC8I GCNNGC 5 cut(s) 112, 273, 396, 400, 404
BstDEI CTNAG 2 cut(s) 90, 351
BstDSI CCRYGG 1 cut(s) 248
BstHHI GCGC 2 cut(s) 206, 413
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 6 cut(s) 10, 304, 346, 395, 408, 419
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 2 cut(s) 396, 420
BstV1I GCAGC 3 cut(s) 22, 188, 193
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 2 cut(s) 340, 356
BtgI CCRYGG 1 cut(s) 248
Cac8I GCNNGC 5 cut(s) 112, 273, 396, 400, 404
CfoI GCGC 2 cut(s) 206, 413
Cfr13I GGNCC 2 cut(s) 245, 338
Csp6I GTAC 2 cut(s) 265, 417
CviAII CATG 2 cut(s) 216, 249
CviQI GTAC 2 cut(s) 265, 417
DdeI CTNAG 2 cut(s) 90, 351
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 248
Eco147I AGGCCT 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 168
Eco81I CCTNAGG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 2 cut(s) 219, 252
FaiI YATR 5 cut(s) 15, 217, 221, 250, 392
FaqI GGGAC 2 cut(s) 258, 301
FatI CATG 2 cut(s) 215, 248
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 5 cut(s) 11, 202, 207, 341, 387
Fsp4HI GCNGC 5 cut(s) 11, 202, 207, 341, 387
FspBI CTAG 1 cut(s) 111
GlaI GCGC 2 cut(s) 205, 412
GluI GCNGC 5 cut(s) 11, 202, 207, 341, 387
GsaI CCCAGC 1 cut(s) 10
HaeIII GGCC 2 cut(s) 340, 356
HhaI GCGC 2 cut(s) 206, 413
Hin1II CATG 2 cut(s) 219, 252
Hin6I GCGC 2 cut(s) 204, 411
HinP1I GCGC 2 cut(s) 204, 411
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 2 cut(s) 86, 326
Hpy188III TCNNGA 2 cut(s) 97, 190
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 1 cut(s) 217
HpyCH4IV ACGT 2 cut(s) 267, 290
HpyCH4V TGCA 6 cut(s) 209, 238, 271, 398, 406, 422
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 304, 346, 395, 408, 419
HpyF3I CTNAG 2 cut(s) 90, 351
HpySE526I ACGT 2 cut(s) 267, 290
Hsp92II CATG 2 cut(s) 219, 252
HspAI GCGC 2 cut(s) 204, 411
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 295
Lsp1109I GCAGC 3 cut(s) 22, 188, 193
MaeI CTAG 1 cut(s) 111
MaeII ACGT 2 cut(s) 267, 290
MalI GATC 1 cut(s) 188
MbiI CCGCTC 1 cut(s) 298
MboI GATC 1 cut(s) 186
MboII GAAGA 1 cut(s) 241
MluCI AATT 2 cut(s) 69, 79
MmeI TCCRAC 4 cut(s) 139, 273, 304, 360
MnlI CCTC 4 cut(s) 44, 246, 367, 376
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 6 cut(s) 10, 304, 346, 395, 408, 419
NcoI CCATGG 1 cut(s) 248
NdeII GATC 1 cut(s) 186
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 2 cut(s) 219, 252
NlaIV GGNNCC 1 cut(s) 246
NspI RCATGY 1 cut(s) 219
PceI AGGCCT 1 cut(s) 356
PciI ACATGT 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PkrI GCNGC 5 cut(s) 12, 203, 208, 342, 388
Ppu21I YACGTR 1 cut(s) 268
PscI ACATGT 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 2 cut(s) 245, 338
PstI CTGCAG 2 cut(s) 400, 424
RsaI GTAC 2 cut(s) 266, 418
RsaNI GTAC 2 cut(s) 265, 417
SatI GCNGC 5 cut(s) 11, 202, 207, 341, 387
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 2 cut(s) 245, 338
SbfI CCTGCAGG 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 309
SdaI CCTGCAGG 1 cut(s) 400
SetI ASST 8 cut(s) 78, 91, 112, 140, 184, 270, 293, 371
SfcI CTRYAG 2 cut(s) 396, 420
SinI GGWCC 1 cut(s) 245
Sse8387I CCTGCAGG 1 cut(s) 400
Sse9I AATT 2 cut(s) 69, 79
SseBI AGGCCT 1 cut(s) 356
SsiI CCGC 3 cut(s) 298, 341, 386
SspMI CTAG 1 cut(s) 111
StuI AGGCCT 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 248
TaiI ACGT 2 cut(s) 270, 293
TaqI TCGA 2 cut(s) 96, 359
TasI AATT 2 cut(s) 69, 79
TauI GCSGC 2 cut(s) 343, 389
TseI GCWGC 3 cut(s) 10, 201, 206
TspDTI ATGAA 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 219
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.