MD06G1071700.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0003387
Physical Location & Seq
Reverse (-)
17710738 .. 17711139
402 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1071700.v1.1.491

Sequence Viewer

Length: 402 bp
ATGGTGGAGCATGTGCAACTGTGGAAGGTTGCATTTCACAGCACCTCTCATCGATGGATCCAACTTTTACAAGCTACCTTATGTAGGACTAGTTCTCTAGAGACGAGGATTAGAAGTTTGACAAGGGATGCTGTTAAGGAGATACAGCGATCAGGGACGAAGTGTGGTTGTGAGAAACCGATGGCGAGCGGTTGCTGGAGCTGCCTCATGAGAGAAGTTTCGGGCAGACTTAGCAATGCTGGTTACAACAGTGCCATGTGCAAGTCTAAGTGGAGGAGTTCATTGGACATTCCTTCAGGAGAGCACTCATTTTTGGATGTGGTGAACAGTTCAAGTCTAAAGAAGGGGGAAATGAGGGTGATCATAGAGATGAACTTCAAAGACGAATTCGAGATGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

9.02

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 16 - 133 7.2e-30 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 1 cut(s) 189
AclWI GGATC 2 cut(s) 52, 65
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 2 cut(s) 333, 379
AhlI ACTAGT 1 cut(s) 89
AluBI AGCT 2 cut(s) 74, 201
AluI AGCT 2 cut(s) 74, 201
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 52, 65
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 334, 370
BamHI GGATCC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 188
BccI CCATC 3 cut(s) 48, 175, 388
BclI TGATCA 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 2 cut(s) 90, 98
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 59
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 217
Bsa29I ATCGAT 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 241
BseCI ATCGAT 1 cut(s) 52
BseGI GGATG 2 cut(s) 133, 322
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 188
BshVI ATCGAT 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 306
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 57, 149, 360
BspACI CCGC 1 cut(s) 189
BspDI ATCGAT 1 cut(s) 52
BspHI TCATGA 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 2 cut(s) 52, 65
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 241
BssMI GATC 3 cut(s) 57, 149, 360
Bst4CI ACNGT 3 cut(s) 21, 251, 329
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 230, 267
BstENI CCTNNNNNAGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 133, 322
BstKTI GATC 3 cut(s) 60, 152, 363
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 57, 149, 360
BstMWI GCNNNNNNNGC 2 cut(s) 201, 231
BstNSI RCATGY 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
Bsu15I ATCGAT 1 cut(s) 52
BsuTUI ATCGAT 1 cut(s) 52
BtsCI GGATG 2 cut(s) 133, 322
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 207
ClaI ATCGAT 1 cut(s) 52
CviAII CATG 3 cut(s) 11, 208, 256
CviJI RGCY 3 cut(s) 74, 201, 398
CviKI_1 RGCY 3 cut(s) 74, 201, 398
DdeI CTNAG 2 cut(s) 230, 267
DpnI GATC 3 cut(s) 59, 151, 362
DpnII GATC 3 cut(s) 57, 149, 360
Eco57I CTGAAG 1 cut(s) 279
EcoNI CCTNNNNNAGG 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 386
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 3 cut(s) 14, 211, 259
FaiI YATR 5 cut(s) 12, 82, 209, 257, 365
FaqI GGGAC 1 cut(s) 169
FatI CATG 3 cut(s) 10, 207, 255
FbaI TGATCA 1 cut(s) 360
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 2 cut(s) 140, 329
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 2 cut(s) 90, 98
GluI GCNGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 217
Hin1II CATG 3 cut(s) 14, 211, 259
HphI GGTGA 2 cut(s) 334, 370
Hpy166II GTNNAC 1 cut(s) 325
Hpy188III TCNNGA 4 cut(s) 98, 208, 297, 391
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 3 cut(s) 19, 303, 337
HpyCH4III ACNGT 3 cut(s) 21, 251, 329
HpyCH4V TGCA 3 cut(s) 16, 32, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 231
HpyF3I CTNAG 2 cut(s) 230, 267
Hsp92II CATG 3 cut(s) 14, 211, 259
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 3 cut(s) 57, 149, 360
LmnI GCTCC 2 cut(s) 7, 198
LpnPI CCDG 4 cut(s) 138, 181, 225, 282
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 90, 98
MaeIII GTNAC 1 cut(s) 242
MalI GATC 3 cut(s) 59, 151, 362
MbiI CCGCTC 1 cut(s) 189
MboI GATC 3 cut(s) 57, 149, 360
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 5 cut(s) 55, 99, 215, 267, 348
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 201, 231
NdeII GATC 3 cut(s) 57, 149, 360
NlaIII CATG 3 cut(s) 14, 211, 259
NlaIV GGNNCC 1 cut(s) 59
NspI RCATGY 1 cut(s) 14
PagI TCATGA 1 cut(s) 207
PkrI GCNGC 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 59
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PsuI RGATCY 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 3 cut(s) 57, 149, 360
SduI GDGCHC 1 cut(s) 306
SetI ASST 5 cut(s) 30, 47, 76, 80, 203
SfaNI GCATC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 368
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 1 cut(s) 386
SsiI CCGC 1 cut(s) 189
SspMI CTAG 2 cut(s) 90, 98
TaaI ACNGT 3 cut(s) 21, 251, 329
TaqI TCGA 2 cut(s) 52, 390
TasI AATT 1 cut(s) 386
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 256
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 2 cut(s) 270, 386
TspRI CASTG 1 cut(s) 256
XagI CCTNNNNNAGG 1 cut(s) 82
XapI RAATTY 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 97
XceI RCATGY 1 cut(s) 14
XspI CTAG 2 cut(s) 90, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.