MD10G1293600.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0003387
Physical Location & Seq
Reverse (-)
38178421 .. 38180154
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1293600.v1.1.491

Sequence Viewer

Length: 882 bp
ATGGCAAGAGCAGCTCCGGCCACTGCTCGAGAGTTATTAGCGGCGAGTTTTTCCGGCATGGTTTTCGGGTTCCTCGAAGACGGCCACGAGTTTCCGGAAAGTTACGGCAGCAGCAGCGTCGGAAGCCAAGAAAATGACGCCTTTTTGTTAGATGAAGGAGAGGAAGCCGGAGATCAGGAGGAGAAGGACAAGAGGTTTTGGGAAAAACAGCACCAACTTTTACAAGCTACCTTATGCAGGACTAGCTCTCTAGAGACGAGGATTAGAAGTTTGACAAGGGAGGCAGTGAAGGAGATACAGCGGTCAGGGACGGAGTGTGGTTGTGGCAAACCGATGGCGAGCGGTTGCCGGAGCTGCCTCATGAGAGAAGTTTCCGGCAGACTTAGCAATGCTGGTTACAACAGTGCCATGTGCAAGTCTAAGTGGAGGAGTTCACCGGACATTCCTTCAGGAGAGCACTCATTTTTGGATGTGGTGAACAATTCAAGTCTAAAGAAGGGGGAGGTGAGGGTGATCGTAGAGCTGAACTTCAGAGACGAATTCGAGATGGCTCGAGCGAGCGACGAATACAACGATCTGGTTCAAAAACTCCCTGAAGTGTTTGTCGGCAAAGTTGAGAGACTGCAAGGCCTGATTAAAATTTTATGTTCCGCCGCCAAGAAATGCATGAAGGAAAAGAAAATGCACATGGGGCCATGGAGGAAGCAGAAGTACATGCAAGCAAAGTGGCTCGGCCCCTGCAAAAGAACAACATCGACGCCACTTCTGGCCGTGGGAGACTCCGCCAGGCTGGGACCGAAGCCTAAGGAGTCGATGCTGACCGTAGATTTGCTAGAGATGATGCATAACAGGCATTGCATGACAGCAGTTCAAGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

294

Amino Acids

32.74

Weight (kDa)

8.47

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 19 - 249 2.9e-79 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 342
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 6 cut(s) 41, 301, 342, 651, 654, 783
AcoI YGGCCR 3 cut(s) 18, 82, 768
AcsI RAATTY 2 cut(s) 539, 639
AcuI CTGAAG 3 cut(s) 432, 514, 615
AcyI GRCGYC 2 cut(s) 138, 758
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 3 cut(s) 486, 584, 872
AjnI CCWGG 1 cut(s) 785
AluBI AGCT 5 cut(s) 14, 227, 246, 354, 523
AluI AGCT 5 cut(s) 14, 227, 246, 354, 523
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 4 cut(s) 248, 528, 613, 771
Ama87I CYCGRG 2 cut(s) 27, 552
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 6 cut(s) 18, 82, 628, 692, 733, 768
ApeKI GCWGC 5 cut(s) 11, 108, 111, 114, 354
ApoI RAATTY 2 cut(s) 539, 639
ArsI GACNNNNNNTTYG 2 cut(s) 811, 843
AspS9I GGNCC 3 cut(s) 692, 734, 794
AsuHPI GGTGA 4 cut(s) 426, 487, 517, 523
AvaI CYCGRG 2 cut(s) 27, 552
AvaII GGWCC 1 cut(s) 794
AxyI CCTNAGG 1 cut(s) 804
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
BarI GAAGNNNNNNTAC 2 cut(s) 695, 727
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 5 cut(s) 23, 120, 123, 126, 341
BccI CCATC 2 cut(s) 328, 541
BceAI ACGGC 3 cut(s) 97, 121, 755
BcgI CGANNNNNNTGC 4 cut(s) 46, 80, 100, 134
BciT130I CCWGG 1 cut(s) 787
BcoDI GTCTC 4 cut(s) 248, 528, 613, 771
BfaI CTAG 3 cut(s) 243, 251, 833
BisI GCNGC 7 cut(s) 12, 42, 109, 112, 115, 355, 654
BlsI GCNGC 7 cut(s) 13, 43, 110, 113, 116, 356, 655
Bme1390I CCNGG 1 cut(s) 787
Bme18I GGWCC 1 cut(s) 794
BmeT110I CYCGRG 2 cut(s) 27, 552
BmgT120I GGNCC 3 cut(s) 692, 734, 794
BmiI GGNNCC 4 cut(s) 71, 693, 736, 795
BmrFI CCNGG 1 cut(s) 787
BmsI GCATC 2 cut(s) 804, 831
BpiI GAAGAC 1 cut(s) 84
BsaHI GRCGYC 2 cut(s) 138, 758
BsaJI CCNNGG 2 cut(s) 695, 771
BsaWI WCCGGW 2 cut(s) 94, 436
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse21I CCTNAGG 1 cut(s) 804
Bse3DI GCAATG 2 cut(s) 394, 853
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 1 cut(s) 787
BseDI CCNNGG 2 cut(s) 695, 771
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMI GCAATG 2 cut(s) 394, 853
BseRI GAGGAG 2 cut(s) 194, 442
BseXI GCAGC 5 cut(s) 23, 120, 123, 126, 341
BseYI CCCAGC 1 cut(s) 790
BshFI GGCC 6 cut(s) 20, 84, 630, 694, 735, 770
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 2 cut(s) 27, 552
BsiSI CCGG 7 cut(s) 17, 54, 95, 168, 349, 375, 437
BslFI GGGAC 2 cut(s) 322, 807
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 4 cut(s) 248, 528, 613, 771
BsmBI CGTCTC 2 cut(s) 248, 528
BsmFI GGGAC 2 cut(s) 322, 807
BsnI GGCC 6 cut(s) 20, 84, 630, 694, 735, 770
BsoBI CYCGRG 2 cut(s) 27, 552
Bsp1286I GDGCHC 1 cut(s) 459
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 3 cut(s) 172, 513, 574
Bsp19I CCATGG 1 cut(s) 695
BspACI CCGC 6 cut(s) 41, 301, 342, 651, 654, 783
BspANI GGCC 6 cut(s) 20, 84, 630, 694, 735, 770
BspEI TCCGGA 1 cut(s) 94
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 4 cut(s) 71, 693, 736, 795
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 2 cut(s) 394, 853
BssECI CCNNGG 2 cut(s) 695, 771
BssMI GATC 3 cut(s) 172, 513, 574
BssNI GRCGYC 2 cut(s) 138, 758
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 695
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 787
Bst4CI ACNGT 2 cut(s) 404, 823
BstACI GRCGYC 2 cut(s) 138, 758
BstC8I GCNNGC 3 cut(s) 340, 559, 720
BstDEI CTNAG 3 cut(s) 383, 420, 804
BstDSI CCRYGG 2 cut(s) 695, 771
BstENI CCTNNNNNAGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 3 cut(s) 175, 516, 577
BstMAI GTCTC 4 cut(s) 248, 528, 613, 771
BstMBI GATC 3 cut(s) 172, 513, 574
BstMWI GCNNNNNNNGC 9 cut(s) 11, 17, 114, 123, 243, 354, 384, 691, 850
BstNI CCWGG 1 cut(s) 787
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 1 cut(s) 785
BstV1I GCAGC 5 cut(s) 23, 120, 123, 126, 341
BstV2I GAAGAC 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 804
BsuRI GGCC 6 cut(s) 20, 84, 630, 694, 735, 770
BtgI CCRYGG 2 cut(s) 695, 771
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 2 cut(s) 21, 291
BtsIMutI CAGTG 3 cut(s) 21, 291, 409
Cac8I GCNNGC 3 cut(s) 340, 559, 720
CciI TCATGA 1 cut(s) 360
Cfr13I GGNCC 3 cut(s) 692, 734, 794
CseI GACGC 3 cut(s) 106, 146, 766
Csp6I GTAC 1 cut(s) 712
CspCI CAANNNNNGTGG 2 cut(s) 707, 742
CviAII CATG 8 cut(s) 58, 361, 409, 667, 688, 696, 715, 859
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 3 cut(s) 383, 420, 804
DpnI GATC 3 cut(s) 174, 515, 576
DpnII GATC 3 cut(s) 172, 513, 574
EaeI YGGCCR 3 cut(s) 18, 82, 768
EciI GGCGGA 2 cut(s) 640, 772
Eco130I CCWWGG 1 cut(s) 695
Eco147I AGGCCT 1 cut(s) 630
Eco47I GGWCC 1 cut(s) 794
Eco57I CTGAAG 3 cut(s) 432, 514, 615
Eco81I CCTNAGG 1 cut(s) 804
Eco88I CYCGRG 2 cut(s) 27, 552
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 785
EcoT14I CCWWGG 1 cut(s) 695
EcoT22I ATGCAT 2 cut(s) 668, 846
ErhI CCWWGG 1 cut(s) 695
Esp3I CGTCTC 2 cut(s) 248, 528
FaeI CATG 8 cut(s) 61, 364, 412, 670, 691, 699, 718, 862
FaqI GGGAC 2 cut(s) 322, 807
FatI CATG 8 cut(s) 57, 360, 408, 666, 687, 695, 714, 858
Fnu4HI GCNGC 7 cut(s) 12, 42, 109, 112, 115, 355, 654
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 7 cut(s) 12, 42, 109, 112, 115, 355, 654
FspBI CTAG 3 cut(s) 243, 251, 833
GluI GCNGC 7 cut(s) 12, 42, 109, 112, 115, 355, 654
GsaI CCCAGC 1 cut(s) 794
HaeIII GGCC 6 cut(s) 20, 84, 630, 694, 735, 770
HapII CCGG 7 cut(s) 17, 54, 95, 168, 349, 375, 437
HgaI GACGC 3 cut(s) 106, 146, 766
Hin1I GRCGYC 2 cut(s) 138, 758
Hin1II CATG 8 cut(s) 61, 364, 412, 670, 691, 699, 718, 862
HinfI GANTC 2 cut(s) 779, 809
HpaII CCGG 7 cut(s) 17, 54, 95, 168, 349, 375, 437
HphI GGTGA 4 cut(s) 426, 487, 517, 523
Hpy166II GTNNAC 2 cut(s) 434, 478
Hpy188I TCNGA 2 cut(s) 122, 533
Hpy188III TCNNGA 7 cut(s) 29, 95, 176, 251, 361, 450, 544
Hpy8I GTNNAC 2 cut(s) 434, 478
Hpy99I CGWCG 3 cut(s) 122, 566, 760
HpyAV CCTTC 6 cut(s) 149, 178, 283, 456, 490, 664
HpyCH4III ACNGT 2 cut(s) 404, 823
HpyCH4V TGCA 9 cut(s) 237, 414, 625, 666, 685, 718, 741, 844, 858
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 17, 114, 123, 243, 354, 384, 691, 850
HpyF3I CTNAG 3 cut(s) 383, 420, 804
Hsp92I GRCGYC 2 cut(s) 138, 758
Hsp92II CATG 8 cut(s) 61, 364, 412, 670, 691, 699, 718, 862
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 172, 513, 574
LmnI GCTCC 2 cut(s) 19, 351
Lsp1109I GCAGC 5 cut(s) 23, 120, 123, 126, 341
LweI GCATC 2 cut(s) 804, 831
MaeI CTAG 3 cut(s) 243, 251, 833
MaeIII GTNAC 2 cut(s) 101, 395
MalI GATC 3 cut(s) 174, 515, 576
MbiI CCGCTC 1 cut(s) 342
MboI GATC 3 cut(s) 172, 513, 574
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 3 cut(s) 481, 539, 639
MlyI GAGTC 2 cut(s) 773, 818
MmeI TCCRAC 1 cut(s) 100
Mph1103I ATGCAT 2 cut(s) 668, 846
MroI TCCGGA 1 cut(s) 94
MseI TTAA 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 7 cut(s) 17, 54, 95, 168, 349, 375, 437
MspR9I CCNGG 1 cut(s) 787
MvaI CCWGG 1 cut(s) 787
MwoI GCNNNNNNNGC 9 cut(s) 11, 17, 114, 123, 243, 354, 384, 691, 850
NcoI CCATGG 1 cut(s) 695
NdeII GATC 3 cut(s) 172, 513, 574
NlaIII CATG 8 cut(s) 61, 364, 412, 670, 691, 699, 718, 862
NlaIV GGNNCC 4 cut(s) 71, 693, 736, 795
NmeAIII GCCGAG 1 cut(s) 711
NsiI ATGCAT 2 cut(s) 668, 846
NspI RCATGY 1 cut(s) 718
PaeR7I CTCGAG 2 cut(s) 27, 552
PagI TCATGA 1 cut(s) 360
PceI AGGCCT 1 cut(s) 630
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 570
PkrI GCNGC 7 cut(s) 13, 43, 110, 113, 116, 356, 655
PleI GAGTC 2 cut(s) 773, 817
PpsI GAGTC 2 cut(s) 773, 817
Psp6I CCWGG 1 cut(s) 785
PspFI CCCAGC 1 cut(s) 790
PspGI CCWGG 1 cut(s) 785
PspN4I GGNNCC 4 cut(s) 71, 693, 736, 795
PspPI GGNCC 3 cut(s) 692, 734, 794
PspXI VCTCGAGB 1 cut(s) 552
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 7 cut(s) 12, 42, 109, 112, 115, 355, 654
Sau3AI GATC 3 cut(s) 172, 513, 574
Sau96I GGNCC 3 cut(s) 692, 734, 794
SchI GAGTC 2 cut(s) 773, 818
ScrFI CCNGG 1 cut(s) 787
SduI GDGCHC 1 cut(s) 459
SetI ASST 8 cut(s) 16, 197, 229, 233, 248, 356, 507, 525
SfaNI GCATC 2 cut(s) 804, 831
Sfr274I CTCGAG 2 cut(s) 27, 552
SinI GGWCC 1 cut(s) 794
SlaI CTCGAG 2 cut(s) 27, 552
SmlI CTYRAG 2 cut(s) 27, 552
SmoI CTYRAG 2 cut(s) 27, 552
Sse9I AATT 3 cut(s) 481, 539, 639
SseBI AGGCCT 1 cut(s) 630
SsiI CCGC 6 cut(s) 41, 301, 342, 651, 654, 783
SspMI CTAG 3 cut(s) 243, 251, 833
StuI AGGCCT 1 cut(s) 630
StyD4I CCNGG 1 cut(s) 785
StyI CCWWGG 1 cut(s) 695
TaaI ACNGT 2 cut(s) 404, 823
TaqI TCGA 6 cut(s) 28, 75, 543, 553, 755, 812
TaqII GACCGA 1 cut(s) 811
TasI AATT 3 cut(s) 481, 539, 639
TatI WGTACW 1 cut(s) 711
TauI GCSGC 2 cut(s) 44, 656
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 3 cut(s) 28, 291, 409
TseI GCWGC 5 cut(s) 11, 108, 111, 114, 354
TspDTI ATGAA 2 cut(s) 168, 683
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 3 cut(s) 28, 291, 409
VpaK11BI GGWCC 1 cut(s) 794
XagI CCTNNNNNAGG 1 cut(s) 235
XapI RAATTY 2 cut(s) 539, 639
XbaI TCTAGA 1 cut(s) 250
XceI RCATGY 1 cut(s) 718
XhoI CTCGAG 2 cut(s) 27, 552
XspI CTAG 3 cut(s) 243, 251, 833
Zsp2I ATGCAT 2 cut(s) 668, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.