AT4G32480

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003387
Physical Location & Seq
Forward (+)
15676240 .. 15677977
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32480.1

Sequence Viewer

Length: 864 bp
ATGGATCGGCAAAGTTCCGATGACATCATGAAATTTCTCGACGGCATGGCTAGCTCCGACGATGTTCTTTTTGGCTTCCTCGACGAAGGAAACCACTCACCGGAGGATTATAACTTCGCCGCCGGCGACGAATCCGAAGTTGACAACGATACCACCGATTGTAATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAGGCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACTAAGGAAGCGTTGAAAGTAGTTAGATCAAAGGGTTTGGTATGTGTCTGCCGGAGACCGGTTACCGACGGTTGTCGTAGCTGTTTACGCGGCGAAGTATCTAGCCTCCTCCGAGAAGCTGGCTATGATTGCGTCATTTCCAAATCTAAGTGGAGAAGCTCTCATGAGATCCCTGCAGGTGAGCATGAATACTTGGAGGTCGTGGACAAATCGGTTTCAAAGAAAGGCGAGATCCGGGTGGTGATCGAACTATGTTTTAGGGCGGAGTTTGAGATGGCGAGAGGCAGTGAAGAGTACAAGCGACTCATCGGAATGTTACCGGAAGTGTATGTCGGGAAAACGGAGAGGCTAAAATCATTAATAAAGATATTGTGCACCGCAGCGAAGAAGTGTATGAAAGACAAGAAGATGCACATGGGTCCTTGGAGAAAACACAAATACATGCAGGCTAAATGGTTTGGAACTTGTGAGAGAAAATCTGTGTCGCCAGTATCCGAAACTGAGGAGAATATGTTTCCGGTGGCAAAGCAGAGGGTTTCTATGTTGAATTATGGTCTTTTTGGTGCTGGAATAGGCCGTCCGACCGTTGTAGCGGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

287

Amino Acids

32.59

Weight (kDa)

7.52

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 21 - 245 3e-77 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
AarI CACCTGC 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 428
AccII CGCG 1 cut(s) 351
AciI CCGC 5 cut(s) 120, 351, 524, 639, 854
AclWI GGATC 3 cut(s) 12, 424, 487
AcsI RAATTY 2 cut(s) 32, 182
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 2 cut(s) 100, 319
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 4 cut(s) 237, 277, 480, 808
AjnI CCWGG 1 cut(s) 210
AloI GAACNNNNNNTCC 2 cut(s) 192, 224
AluBI AGCT 4 cut(s) 54, 342, 380, 420
AluI AGCT 4 cut(s) 54, 342, 380, 420
Alw21I GWGCWC 1 cut(s) 638
Alw26I GTCTC 2 cut(s) 236, 310
Alw44I GTGCAC 1 cut(s) 634
AlwI GGATC 3 cut(s) 12, 424, 487
AoxI GGCC 1 cut(s) 835
ApaLI GTGCAC 1 cut(s) 634
ApeKI GCWGC 1 cut(s) 641
ApoI RAATTY 2 cut(s) 32, 182
AseI ATTAAT 1 cut(s) 620
AsiGI ACCGGT 1 cut(s) 319
Asp700I GAANNNNTTC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 680
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 3 cut(s) 90, 452, 514
AsuNHI GCTAGC 1 cut(s) 50
AvaII GGWCC 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 638
Bbv12I GWGCWC 1 cut(s) 638
BbvI GCAGC 1 cut(s) 653
BccI CCATC 1 cut(s) 529
BceAI ACGGC 2 cut(s) 58, 822
BciT130I CCWGG 1 cut(s) 212
BciVI GTATCC 1 cut(s) 763
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 2 cut(s) 236, 310
BfaI CTAG 2 cut(s) 51, 363
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 428
BfuI GTATCC 1 cut(s) 763
BisI GCNGC 3 cut(s) 120, 352, 642
BlsI GCNGC 3 cut(s) 121, 353, 643
Bme1390I CCNGG 2 cut(s) 212, 497
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 1 cut(s) 680
BmiI GGNNCC 1 cut(s) 681
BmrFI CCNGG 2 cut(s) 212, 497
BmsI GCATC 1 cut(s) 660
BmtI GCTAGC 1 cut(s) 54
BoxI GACNNNNGTC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 406, 438
BpmI CTGGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 683
BsaWI WCCGGW 4 cut(s) 100, 319, 580, 778
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 758, 788
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 319
Bse118I RCCGGY 2 cut(s) 122, 319
Bse1I ACTGG 1 cut(s) 749
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 683
BseLI CCNNNNNNNGG 2 cut(s) 100, 319
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 1 cut(s) 749
BseRI GAGGAG 2 cut(s) 359, 779
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 351
Bsh1285I CGRYCG 1 cut(s) 846
BshFI GGCC 1 cut(s) 837
BshTI ACCGGT 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 846
BsiHKAI GWGCWC 1 cut(s) 638
BsiSI CCGG 7 cut(s) 101, 123, 313, 320, 496, 581, 779
BslI CCNNNNNNNGG 2 cut(s) 100, 319
BsmAI GTCTC 2 cut(s) 236, 310
BsnI GGCC 1 cut(s) 837
Bso31I GGTCTC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 638
Bsp143I GATC 5 cut(s) 4, 287, 429, 492, 504
BspACI CCGC 5 cut(s) 120, 351, 524, 639, 854
BspANI GGCC 1 cut(s) 837
BspCNI CTCAG 1 cut(s) 754
BspFNI CGCG 1 cut(s) 351
BspHI TCATGA 2 cut(s) 27, 424
BspLI GGNNCC 1 cut(s) 681
BspMAI CTGCAG 1 cut(s) 439
BspMI ACCTGC 1 cut(s) 428
BspOI GCTAGC 1 cut(s) 54
BspPI GGATC 3 cut(s) 12, 424, 487
BspTNI GGTCTC 1 cut(s) 310
BsrFI RCCGGY 2 cut(s) 122, 319
BsrI ACTGG 1 cut(s) 749
BssAI RCCGGY 2 cut(s) 122, 319
BssECI CCNNGG 1 cut(s) 683
BssMI GATC 5 cut(s) 4, 287, 429, 492, 504
BssT1I CCWWGG 1 cut(s) 683
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 3 cut(s) 222, 332, 847
Bst6I CTCTTC 2 cut(s) 165, 546
BstC8I GCNNGC 4 cut(s) 52, 124, 382, 708
BstDEI CTNAG 3 cut(s) 264, 408, 762
BstEII GGTNACC 1 cut(s) 322
BstFNI CGCG 1 cut(s) 351
BstKTI GATC 5 cut(s) 7, 290, 432, 495, 507
BstMAI GTCTC 2 cut(s) 236, 310
BstMBI GATC 5 cut(s) 4, 287, 429, 492, 504
BstMCI CGRYCG 1 cut(s) 846
BstMWI GCNNNNNNNGC 3 cut(s) 51, 348, 390
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 706
BstPAI GACNNNNGTC 1 cut(s) 333
BstPI GGTNACC 1 cut(s) 322
BstSCI CCNGG 2 cut(s) 210, 495
BstSFI CTRYAG 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 638
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 653
BstX2I RGATCY 2 cut(s) 429, 492
BstYI RGATCY 2 cut(s) 429, 492
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 1 cut(s) 837
BtsI GCAGTG 1 cut(s) 553
BtsIMutI CAGTG 2 cut(s) 218, 553
BveI ACCTGC 1 cut(s) 428
Cac8I GCNNGC 4 cut(s) 52, 124, 382, 708
CciI TCATGA 2 cut(s) 27, 424
Cfr10I RCCGGY 2 cut(s) 122, 319
Cfr13I GGNCC 1 cut(s) 680
CseI GACGC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 556
CspAI ACCGGT 1 cut(s) 319
CviAII CATG 6 cut(s) 28, 46, 425, 446, 676, 703
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 3 cut(s) 264, 408, 762
DpnI GATC 5 cut(s) 6, 289, 431, 494, 506
DpnII GATC 5 cut(s) 4, 287, 429, 492, 504
Eam1104I CTCTTC 2 cut(s) 165, 546
EarI CTCTTC 2 cut(s) 165, 546
EciI GGCGGA 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 683
Eco31I GGTCTC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 680
Eco91I GGTNACC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 680
EcoO65I GGTNACC 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 683
ErhI CCWWGG 1 cut(s) 683
FaeI CATG 6 cut(s) 31, 49, 428, 449, 679, 706
FatI CATG 6 cut(s) 27, 45, 424, 445, 675, 702
Fnu4HI GCNGC 3 cut(s) 120, 352, 642
Fsp4HI GCNGC 3 cut(s) 120, 352, 642
FspBI CTAG 2 cut(s) 51, 363
GluI GCNGC 3 cut(s) 120, 352, 642
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 1 cut(s) 837
HapII CCGG 7 cut(s) 101, 123, 313, 320, 496, 581, 779
HgaI GACGC 1 cut(s) 382
Hin1II CATG 6 cut(s) 31, 49, 428, 449, 679, 706
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 2 cut(s) 131, 564
HpaII CCGG 7 cut(s) 101, 123, 313, 320, 496, 581, 779
HphI GGTGA 3 cut(s) 90, 452, 514
Hpy166II GTNNAC 4 cut(s) 142, 347, 466, 636
Hpy188I TCNGA 8 cut(s) 19, 58, 136, 169, 374, 572, 757, 843
Hpy188III TCNNGA 4 cut(s) 28, 38, 425, 595
Hpy8I GTNNAC 4 cut(s) 142, 347, 466, 636
Hpy99I CGWCG 5 cut(s) 44, 62, 86, 131, 332
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 3 cut(s) 222, 332, 847
HpyCH4V TGCA 4 cut(s) 437, 636, 673, 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 348, 390
HpyF3I CTNAG 3 cut(s) 264, 408, 762
Hsp92II CATG 6 cut(s) 31, 49, 428, 449, 679, 706
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Kzo9I GATC 5 cut(s) 4, 287, 429, 492, 504
LmnI GCTCC 1 cut(s) 59
Lsp1109I GCAGC 1 cut(s) 653
LweI GCATC 1 cut(s) 660
MaeI CTAG 2 cut(s) 51, 363
MaeIII GTNAC 2 cut(s) 322, 576
MalI GATC 5 cut(s) 6, 289, 431, 494, 506
MboI GATC 5 cut(s) 4, 287, 429, 492, 504
MboII GAAGA 4 cut(s) 182, 563, 658, 679
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 2 cut(s) 429, 492
MhlI GDGCHC 1 cut(s) 638
MluCI AATT 5 cut(s) 32, 163, 182, 237, 808
MlyI GAGTC 1 cut(s) 558
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 9 cut(s) 89, 97, 377, 380, 451, 536, 600, 757, 786
MreI CGCCGGCG 1 cut(s) 122
MroNI GCCGGC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 620
MslI CAYNNNNRTG 1 cut(s) 572
MspI CCGG 7 cut(s) 101, 123, 313, 320, 496, 581, 779
MspR9I CCNGG 2 cut(s) 212, 497
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 51, 348, 390
NaeI GCCGGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 497
NdeII GATC 5 cut(s) 4, 287, 429, 492, 504
NgoMIV GCCGGC 1 cut(s) 122
NheI GCTAGC 1 cut(s) 50
NlaIII CATG 6 cut(s) 31, 49, 428, 449, 679, 706
NlaIV GGNNCC 1 cut(s) 681
NspI RCATGY 1 cut(s) 706
PagI TCATGA 2 cut(s) 27, 424
PaqCI CACCTGC 1 cut(s) 428
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 153
PdiI GCCGGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 131
PinAI ACCGGT 1 cut(s) 319
PkrI GCNGC 3 cut(s) 121, 353, 643
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
PpuMI RGGWCCY 1 cut(s) 680
PshAI GACNNNNGTC 1 cut(s) 333
PshBI ATTAAT 1 cut(s) 620
PsiI TTATAA 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 680
Psp6I CCWGG 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 322
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 681
PspPI GGNCC 1 cut(s) 680
PspPPI RGGWCCY 1 cut(s) 680
PstI CTGCAG 1 cut(s) 439
PsuI RGATCY 2 cut(s) 429, 492
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 1 cut(s) 572
SaqAI TTAA 1 cut(s) 620
SatI GCNGC 3 cut(s) 120, 352, 642
Sau3AI GATC 5 cut(s) 4, 287, 429, 492, 504
Sau96I GGNCC 1 cut(s) 680
SbfI CCTGCAGG 1 cut(s) 439
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 2 cut(s) 212, 497
SdaI CCTGCAGG 1 cut(s) 439
SduI GDGCHC 1 cut(s) 638
SetI ASST 6 cut(s) 56, 344, 382, 422, 442, 462
SfaNI GCATC 1 cut(s) 660
SfcI CTRYAG 1 cut(s) 435
SgrAI CRCCGGYG 1 cut(s) 122
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 1 cut(s) 572
Sse8387I CCTGCAGG 1 cut(s) 439
Sse9I AATT 5 cut(s) 32, 163, 182, 237, 808
SsiI CCGC 5 cut(s) 120, 351, 524, 639, 854
SspMI CTAG 2 cut(s) 51, 363
StyD4I CCNGG 2 cut(s) 210, 495
StyI CCWWGG 1 cut(s) 683
TaaI ACNGT 3 cut(s) 222, 332, 847
TaqI TCGA 3 cut(s) 39, 81, 507
TasI AATT 5 cut(s) 32, 163, 182, 237, 808
TatI WGTACW 1 cut(s) 555
TauI GCSGC 2 cut(s) 122, 354
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 620
Tru9I TTAA 1 cut(s) 620
TscAI CASTG 2 cut(s) 225, 553
TseI GCWGC 1 cut(s) 641
TspDTI ATGAA 3 cut(s) 44, 462, 671
TspGWI ACGGA 1 cut(s) 617
TspRI CASTG 2 cut(s) 225, 553
VneI GTGCAC 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 680
VspI ATTAAT 1 cut(s) 620
XapI RAATTY 2 cut(s) 32, 182
XceI RCATGY 1 cut(s) 706
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 2 cut(s) 51, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.