FvH4_1g11850

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003387
Physical Location & Seq
Reverse (-)
6470580 .. 6472199
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11850.t1

Sequence Viewer

Length: 966 bp
ATGAATCCGCGGGAAGAGTCTCGACCATTCATCAACAACACGTGCGTCCGTTGCATTTTGCAAAGAGAGTTGATGGCTGGAGTAATGCTTAGAATTCCGGTCACTCGCCTGACCGCCGACAATATTTTGGAATTTCCCGGGGGCAGAGCTGCCAGTCTTTCCGACATGGTTCTGGGCTTTATAGAGGAACCTGCTGCAGCCACCCATGCCTTCCAGGCCGACAGTATGACGTCCGGCTCCGATGAGGAAGAGGAAGACCAAGCAGCTTCTGTCGAAGAGAACAAGGCATTTTGGGACGAACAACACCAACTTCTCCAGGCAACATTGCATAGAACCAGTAGCATAGAATCGAAAATCCGACAAGCCACCAAGGAGGTGCTGAGAGAAACTATAGATAGCACGTGCTGCCGGTGTTCGAGGGAAGTGGCCGGAGACTGCCGGAATTGTTTGCAAAGCGAAATATGCAATCGGCTTATTAGTTTAGGCTACAACTGTGCCATTTGCAAGTCTAAATGGAAAAGCTCAGCAAGTACCCCATCAGGAGAGCACACTTATTTGGAAGTGCTGGACAATTCAAATCCGAAGAGAGGGGAGACTAGGGTGGTGATTGAGCTCAATTTCCGAGCAGAGTTTGAGATGGCCAGAGCTAGTCAAGACTACAACCGTTTAATTAGCTTCTTGCCGGAAGTCTTTGTCGGGAAAGCCGAAAGACTACGAGCCTTGATCAAAATTTTGTGCAACGCAGCCAAAAAGTGCATGAAGGAGAAGAAAATGCATTTGGGACCTTGGAGGAAGCACAAGTACATGCAAGCTAAGTGGTTTGCAGCCTTCCAACGATCAACTCCGGGATTGTTACAGGTCGGAGGATGTGGAAACCGGCCACCAAAGCCGAGGGCTTCCATGTTGACGTTCGACTTGTCGGAGACTATGCCGGGATTCCATTTCACGGCGGTTGAGGCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

322

Amino Acids

36.13

Weight (kDa)

8.2

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 54 - 279 4.4e-76 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 199
AccII CGCG 1 cut(s) 10
AciI CCGC 4 cut(s) 8, 10, 114, 950
AcoI YGGCCR 3 cut(s) 426, 639, 878
AcsI RAATTY 3 cut(s) 93, 131, 729
AcvI CACGTG 2 cut(s) 42, 402
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 2 cut(s) 532, 803
AfiI CCNNNNNNNGG 2 cut(s) 587, 946
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 1 cut(s) 576
AjnI CCWGG 2 cut(s) 213, 315
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AluBI AGCT 7 cut(s) 149, 266, 522, 613, 647, 675, 812
AluI AGCT 7 cut(s) 149, 266, 522, 613, 647, 675, 812
Alw21I GWGCWC 2 cut(s) 549, 615
Alw26I GTCTC 4 cut(s) 24, 426, 587, 917
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 4 cut(s) 216, 426, 639, 878
ApeKI GCWGC 7 cut(s) 149, 194, 197, 263, 405, 743, 824
ApoI RAATTY 3 cut(s) 93, 131, 729
AspS9I GGNCC 1 cut(s) 782
AsuC2I CCSGG 4 cut(s) 138, 139, 846, 933
AsuHPI GGTGA 1 cut(s) 616
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 782
BalI TGGCCA 1 cut(s) 641
BanII GRGCYC 1 cut(s) 615
BarI GAAGNNNNNNTAC 2 cut(s) 785, 817
BbrPI CACGTG 2 cut(s) 42, 402
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 549, 615
BbvI GCAGC 7 cut(s) 136, 181, 209, 275, 392, 755, 836
BccI CCATC 3 cut(s) 67, 544, 631
BceAI ACGGC 1 cut(s) 963
BciT130I CCWGG 2 cut(s) 215, 317
BclI TGATCA 1 cut(s) 723
BcnI CCSGG 4 cut(s) 138, 139, 846, 933
BcoDI GTCTC 4 cut(s) 24, 426, 587, 917
BfaI CTAG 2 cut(s) 597, 648
BfmI CTRYAG 2 cut(s) 195, 390
BfuAI ACCTGC 1 cut(s) 199
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 7 cut(s) 150, 195, 198, 264, 406, 744, 825
BlpI GCTNAGC 1 cut(s) 523
BlsI GCNGC 7 cut(s) 151, 196, 199, 265, 407, 745, 826
Bme1390I CCNGG 6 cut(s) 138, 139, 215, 317, 846, 933
Bme18I GGWCC 1 cut(s) 782
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 782
BmiI GGNNCC 3 cut(s) 189, 238, 783
BmrFI CCNGG 6 cut(s) 138, 139, 215, 317, 846, 933
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 2 cut(s) 99, 299
Bpu1102I GCTNAGC 1 cut(s) 523
BpuMI CCSGG 4 cut(s) 138, 139, 846, 933
BsaAI YACGTR 2 cut(s) 42, 402
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 6 cut(s) 8, 137, 138, 369, 785, 890
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 587, 946
Bse118I RCCGGY 2 cut(s) 408, 876
Bse1I ACTGG 2 cut(s) 153, 336
Bse3DI GCAATG 1 cut(s) 323
BseBI CCWGG 2 cut(s) 215, 317
BseDI CCNNGG 6 cut(s) 8, 137, 138, 369, 785, 890
BseGI GGATG 1 cut(s) 872
BseLI CCNNNNNNNGG 2 cut(s) 587, 946
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 371, 537
BseNI ACTGG 2 cut(s) 153, 336
BseXI GCAGC 7 cut(s) 136, 181, 209, 275, 392, 755, 836
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 4 cut(s) 218, 428, 641, 880
BsiHKAI GWGCWC 2 cut(s) 549, 615
BsiHKCI CYCGRG 1 cut(s) 137
BslFI GGGAC 2 cut(s) 308, 795
BslI CCNNNNNNNGG 2 cut(s) 587, 946
BsmAI GTCTC 4 cut(s) 24, 426, 587, 917
BsmFI GGGAC 2 cut(s) 308, 795
BsnI GGCC 4 cut(s) 218, 428, 641, 880
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 549, 615
Bsp143I GATC 2 cut(s) 723, 836
Bsp1720I GCTNAGC 1 cut(s) 523
BspACI CCGC 4 cut(s) 8, 10, 114, 950
BspANI GGCC 4 cut(s) 218, 428, 641, 880
BspCNI CTCAG 2 cut(s) 372, 536
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 3 cut(s) 189, 238, 783
BspMAI CTGCAG 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 323
BsrFI RCCGGY 2 cut(s) 408, 876
BsrI ACTGG 2 cut(s) 153, 336
BssAI RCCGGY 2 cut(s) 408, 876
BssECI CCNNGG 6 cut(s) 8, 137, 138, 369, 785, 890
BssMI GATC 2 cut(s) 723, 836
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 2 cut(s) 369, 785
Bst2UI CCWGG 2 cut(s) 215, 317
Bst4CI ACNGT 3 cut(s) 224, 494, 665
Bst6I CTCTTC 4 cut(s) 9, 243, 270, 578
BstACI GRCGYC 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 405
BstBAI YACGTR 2 cut(s) 42, 402
BstC8I GCNNGC 1 cut(s) 810
BstDEI CTNAG 4 cut(s) 89, 380, 523, 813
BstDSI CCRYGG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 872
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 2 cut(s) 726, 839
BstMAI GTCTC 4 cut(s) 24, 426, 587, 917
BstMBI GATC 2 cut(s) 723, 836
BstMWI GCNNNNNNNGC 7 cut(s) 51, 206, 215, 405, 462, 886, 956
BstNI CCWGG 2 cut(s) 215, 317
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 6 cut(s) 136, 137, 213, 315, 844, 931
BstSFI CTRYAG 2 cut(s) 195, 390
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 7 cut(s) 136, 181, 209, 275, 392, 755, 836
BstV2I GAAGAC 1 cut(s) 261
BsuRI GGCC 4 cut(s) 218, 428, 641, 880
BtgI CCRYGG 1 cut(s) 8
BtsCI GGATG 1 cut(s) 872
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 810
CaiI CAGNNNCTG 1 cut(s) 269
Cfr10I RCCGGY 2 cut(s) 408, 876
Cfr13I GGNCC 1 cut(s) 782
Cfr42I CCGCGG 1 cut(s) 11
Cfr9I CCCGGG 1 cut(s) 137
CseI GACGC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 531, 802
CspCI CAANNNNNGTGG 2 cut(s) 797, 832
CviAII CATG 5 cut(s) 166, 206, 757, 805, 901
CviQI GTAC 2 cut(s) 531, 802
DdeI CTNAG 4 cut(s) 89, 380, 523, 813
DpnI GATC 2 cut(s) 725, 838
DpnII GATC 2 cut(s) 723, 836
EaeI YGGCCR 3 cut(s) 426, 639, 878
Eam1104I CTCTTC 4 cut(s) 9, 243, 270, 578
EarI CTCTTC 4 cut(s) 9, 243, 270, 578
Ecl136II GAGCTC 1 cut(s) 613
Eco130I CCWWGG 2 cut(s) 369, 785
Eco24I GRGCYC 1 cut(s) 615
Eco47I GGWCC 1 cut(s) 782
Eco53kI GAGCTC 1 cut(s) 613
Eco72I CACGTG 2 cut(s) 42, 402
Eco88I CYCGRG 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 613
EcoO109I RGGNCCY 1 cut(s) 782
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 2 cut(s) 213, 315
EcoT14I CCWWGG 2 cut(s) 369, 785
EcoT22I ATGCAT 1 cut(s) 777
EcoT38I GRGCYC 1 cut(s) 615
ErhI CCWWGG 2 cut(s) 369, 785
FaeI CATG 5 cut(s) 169, 209, 760, 808, 904
FaqI GGGAC 2 cut(s) 308, 795
FatI CATG 5 cut(s) 165, 205, 756, 804, 900
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 723
Fnu4HI GCNGC 7 cut(s) 150, 195, 198, 264, 406, 744, 825
FokI GGATG 1 cut(s) 879
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 7 cut(s) 150, 195, 198, 264, 406, 744, 825
FspBI CTAG 2 cut(s) 597, 648
GluI GCNGC 7 cut(s) 150, 195, 198, 264, 406, 744, 825
GsuI CTGGAG 2 cut(s) 99, 299
HaeIII GGCC 4 cut(s) 218, 428, 641, 880
HgaI GACGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 5 cut(s) 169, 209, 760, 808, 904
HincII GTYRAC 1 cut(s) 906
HindII GTYRAC 1 cut(s) 906
HinfI GANTC 4 cut(s) 4, 17, 347, 936
HphI GGTGA 1 cut(s) 616
Hpy166II GTNNAC 1 cut(s) 906
Hpy188I TCNGA 7 cut(s) 163, 241, 359, 582, 623, 863, 922
Hpy188III TCNNGA 4 cut(s) 21, 540, 653, 697
Hpy8I GTNNAC 1 cut(s) 906
HpyAV CCTTC 3 cut(s) 220, 754, 838
HpyCH4III ACNGT 3 cut(s) 224, 494, 665
HpyCH4IV ACGT 4 cut(s) 41, 230, 401, 908
HpyF10VI GCNNNNNNNGC 7 cut(s) 51, 206, 215, 405, 462, 886, 956
HpyF3I CTNAG 4 cut(s) 89, 380, 523, 813
HpySE526I ACGT 4 cut(s) 41, 230, 401, 908
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 5 cut(s) 169, 209, 760, 808, 904
Ksp22I TGATCA 1 cut(s) 723
KspI CCGCGG 1 cut(s) 11
Kzo9I GATC 2 cut(s) 723, 836
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 7 cut(s) 136, 181, 209, 275, 392, 755, 836
MaeI CTAG 2 cut(s) 597, 648
MaeII ACGT 4 cut(s) 41, 230, 401, 908
MaeIII GTNAC 2 cut(s) 100, 852
MalI GATC 2 cut(s) 725, 838
MboI GATC 2 cut(s) 723, 836
MboII GAAGA 6 cut(s) 26, 260, 266, 287, 595, 778
MhlI GDGCHC 2 cut(s) 549, 615
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 7 cut(s) 93, 131, 442, 571, 616, 669, 729
MluNI TGGCCA 1 cut(s) 641
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 5 cut(s) 186, 382, 841, 856, 900
Mox20I TGGCCA 1 cut(s) 641
Mph1103I ATGCAT 1 cut(s) 777
MscI TGGCCA 1 cut(s) 641
MseI TTAA 1 cut(s) 668
Msp20I TGGCCA 1 cut(s) 641
MspA1I CMGCKG 1 cut(s) 10
MspR9I CCNGG 6 cut(s) 138, 139, 215, 317, 846, 933
MvaI CCWGG 2 cut(s) 215, 317
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 7 cut(s) 51, 206, 215, 405, 462, 886, 956
NciI CCSGG 4 cut(s) 138, 139, 846, 933
NdeII GATC 2 cut(s) 723, 836
NlaIII CATG 5 cut(s) 169, 209, 760, 808, 904
NlaIV GGNNCC 3 cut(s) 189, 238, 783
NmeAIII GCCGAG 1 cut(s) 915
NmuCI GTSAC 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 777
NspI RCATGY 1 cut(s) 808
PcsI WCGNNNNNNNCGW 1 cut(s) 702
PfeI GAWTC 3 cut(s) 4, 347, 936
PfoI TCCNGGA 1 cut(s) 844
PkrI GCNGC 7 cut(s) 151, 196, 199, 265, 407, 745, 826
PleI GAGTC 1 cut(s) 25
PmaCI CACGTG 2 cut(s) 42, 402
PmlI CACGTG 2 cut(s) 42, 402
PpsI GAGTC 1 cut(s) 25
Ppu21I YACGTR 2 cut(s) 42, 402
PpuMI RGGWCCY 1 cut(s) 782
Psp124BI GAGCTC 1 cut(s) 615
Psp5II RGGWCCY 1 cut(s) 782
Psp6I CCWGG 2 cut(s) 213, 315
PspCI CACGTG 2 cut(s) 42, 402
PspGI CCWGG 2 cut(s) 213, 315
PspN4I GGNNCC 3 cut(s) 189, 238, 783
PspPI GGNCC 1 cut(s) 782
PspPPI RGGWCCY 1 cut(s) 782
PstI CTGCAG 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 269
RsaI GTAC 2 cut(s) 532, 803
RsaNI GTAC 2 cut(s) 531, 802
SacI GAGCTC 1 cut(s) 615
SacII CCGCGG 1 cut(s) 11
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 7 cut(s) 150, 195, 198, 264, 406, 744, 825
Sau3AI GATC 2 cut(s) 723, 836
Sau96I GGNCC 1 cut(s) 782
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 6 cut(s) 138, 139, 215, 317, 846, 933
SduI GDGCHC 2 cut(s) 549, 615
SfcI CTRYAG 2 cut(s) 195, 390
Sfr303I CCGCGG 1 cut(s) 11
SgrBI CCGCGG 1 cut(s) 11
SinI GGWCC 1 cut(s) 782
SmaI CCCGGG 1 cut(s) 139
Sse9I AATT 7 cut(s) 93, 131, 442, 571, 616, 669, 729
SsiI CCGC 4 cut(s) 8, 10, 114, 950
SspI AATATT 1 cut(s) 124
SspMI CTAG 2 cut(s) 597, 648
SstI GAGCTC 1 cut(s) 615
StyD4I CCNGG 6 cut(s) 136, 137, 213, 315, 844, 931
StyI CCWWGG 2 cut(s) 369, 785
TaaI ACNGT 3 cut(s) 224, 494, 665
TaiI ACGT 4 cut(s) 44, 233, 404, 911
TaqI TCGA 5 cut(s) 22, 273, 350, 416, 912
TasI AATT 7 cut(s) 93, 131, 442, 571, 616, 669, 729
TatI WGTACW 1 cut(s) 801
TfiI GAWTC 3 cut(s) 4, 347, 936
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 7 cut(s) 149, 194, 197, 263, 405, 743, 824
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 3 cut(s) 17, 19, 773
TspGWI ACGGA 1 cut(s) 38
TspMI CCCGGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 782
XapI RAATTY 3 cut(s) 93, 131, 729
XceI RCATGY 1 cut(s) 808
XmaI CCCGGG 1 cut(s) 137
XspI CTAG 2 cut(s) 597, 648
ZraI GACGTC 1 cut(s) 231
Zsp2I ATGCAT 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.