Rorug02G0264700

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003387
Physical Location & Seq
Forward (+)
27946192 .. 27946543
352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0264700.1

Sequence Viewer

Length: 246 bp
ATGGCTATGGTACCATGTAGGGGCCTCGTTCTTTCTGTTTTTCTCTTGGTTTTCTTCATCTCTGTCACTGCTAGAGCACGCAGTTTCAATGTAGCAGCTAGTAGTACTGGAAGTGATCATCATCGACAAAAAGGCATGGAATATAAGTTCCAGTCAATCCAAGATGGTGTTCTTGACGATGATACTGAGGACTTAAACGCTATGGATTACACTCCAGCAAGGAGGAAACCACCAATTCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

81

Amino Acids

9.07

Weight (kDa)

6.81

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 11 - 81 3.6e-20 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 10
AfaI GTAC 2 cut(s) 12, 106
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AloI GAACNNNNNNTCC 2 cut(s) 131, 163
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw21I GWGCWC 1 cut(s) 79
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 158
BclI TGATCA 1 cut(s) 115
BfaI CTAG 2 cut(s) 72, 99
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 12, 23
BpmI CTGGAG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 112, 151
Bse8I GATNNNNATC 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 112, 151
BseXI GCAGC 1 cut(s) 107
BshFI GGCC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 20
BsnI GGCC 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 115
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 12, 23
BspT107I GGYRCC 1 cut(s) 10
BsrI ACTGG 2 cut(s) 112, 151
BssMI GATC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 186
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 107
BsuRI GGCC 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 11, 105
CviAII CATG 2 cut(s) 15, 136
CviJI RGCY 3 cut(s) 5, 24, 98
CviKI_1 RGCY 3 cut(s) 5, 24, 98
CviQI GTAC 2 cut(s) 11, 105
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 22
FaeI CATG 2 cut(s) 18, 139
FaiI YATR 6 cut(s) 8, 16, 137, 144, 203, 240
FatI CATG 2 cut(s) 14, 135
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 72, 99
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 24
Hin1II CATG 2 cut(s) 18, 139
Hpy188III TCNNGA 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 2 cut(s) 18, 139
KpnI GGTACC 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 93, 164, 228
Lsp1109I GCAGC 1 cut(s) 107
MaeI CTAG 2 cut(s) 72, 99
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 234
MnlI CCTC 3 cut(s) 35, 181, 216
MseI TTAA 1 cut(s) 194
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 18, 139
NlaIV GGNNCC 2 cut(s) 12, 23
NmuCI GTSAC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 12, 23
PspPI GGNCC 1 cut(s) 22
RsaI GTAC 2 cut(s) 12, 106
RsaNI GTAC 2 cut(s) 11, 105
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 22
ScaI AGTACT 1 cut(s) 106
SduI GDGCHC 1 cut(s) 79
SetI ASST 1 cut(s) 100
Sse9I AATT 1 cut(s) 234
SspMI CTAG 2 cut(s) 72, 99
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 104
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 46, 227
TspRI CASTG 1 cut(s) 73
XspI CTAG 2 cut(s) 72, 99
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.