Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001665.1

Orthogroup ID

OG0003387

Physical Location & Seq

Genomic Coordinates Forward (+)

71283 .. 72823

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001665.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atggccagaactgcggcgagcactgcacggcagttgttggcggcgagtttctccggcatggttttcgggtttctagaagacggaggtcaggaattcaagcagagttacagcagcagcgatgggagtagtcaagaaaatgaggcaatgttcgatatcgaggatgatcaagaagaggccggagaggacgaaaaggataagaagttctgggacaaccagaaccagattttagaggcaacgttatgcaggactagttctctagagacgaagattaggagcgtgacaaaggaaacggtgaaggagtcgggggaggcggtgtgcggttgtgggaaggcggcgagtggttgccggagctgccttatgagggaagtttccggcaggctttgcaatgctggttacaacagtgccatatgcaagtccaagtggaggagttcgccggatattccttcaggagagcacacatttttggatgtggtggacaattcaagctcaaggaaaggagaggtgagggtgatcatagaactcaacttcagagccgagtttgagatggcgagagcaagcgacgaatacaacacattggtgcaacgacttcccgaaatctttgtcggcaaggtcgaaagacttcaaaatttgatcaaaattttgtgttcggctgccaagaagtgtatgaaggagaagaaaatgcacatggggccgtggaggaagcaaaagtacatgcaagctaaatggcttggtgcctgcaagagaacgacgtcaacaccgcctttgtcaatggggcaatcggatcagctgcggccgaggccgaaggcatcgatgctaactgttgatttgctaggagagatgatgcctaatatgcactgcaaagtggttgcagttttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

292

Amino Acids

32.53

Weight (kDa)

8.23

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20670 AT4G32480
fragaria_vesca	FvH4_1g11850 FvH4_3g09070 FvH4_6g26340
malus_domestica	MD05G1338400.v1.1 MD06G1071700.v1.1 MD09G1246100.v1.1 MD10G1293600.v1.1 MD17G1238700.v1.1
prunus_persica	Prupe.3G131700_v2.0.a1 Prupe.4G048200_v2.0.a1
pyrus_communis	pycom05g28980 pycom09g16360 pycom10g24550 pycom17g24280
rosa_chinensis	RchiOBHm_Chr2g0126781 RchiOBHm_Chr5g0008561
rosa_laevigata	RLG00000018922 RLG00000031583
rosa_multiflora	Rmu_sc0000007.1_g000008 Rmu_sc0001665.1_g000018
rosa_roxburghii	Rroxscaffold_1G00067980 Rroxscaffold_2G00116980
rosa_rugosa	Rorug02G0264700 Rorug04G0436700
rosa_samantha	Rh2AG321900 Rh2BG329800 Rh2CG309700 Rh2DG349100 Rh5AG065500 Rh5BG063000 Rh5CG073100 Rh5DG063200
rosa_wichuraiana	Rw2G026090 Rw5G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	731
AciI	CCGC	7 cut(s)	14, 41, 311, 318, 332, 758, 790
AclI	AACGTT	1 cut(s)	236
AclWI	GGATC	1 cut(s)	789
AcoI	YGGCCR	2 cut(s)	3, 791
AcsI	RAATTY	3 cut(s)	92, 625, 636
AcuI	CTGAAG	2 cut(s)	429, 511
AcyI	GRCGYC	1 cut(s)	749
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	2 cut(s)	361, 423
AgsI	TTSAA	3 cut(s)	97, 483, 623
AhlI	ACTAGT	1 cut(s)	248
AleI	CACNNNNGTG	1 cut(s)	575
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
AluBI	AGCT	4 cut(s)	351, 486, 719, 787
AluI	AGCT	4 cut(s)	351, 486, 719, 787
Alw21I	GWGCWC	2 cut(s)	23, 456
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	789
AoxI	GGCC	5 cut(s)	3, 174, 689, 791, 797
ApeKI	GCWGC	5 cut(s)	111, 114, 351, 650, 787
ApoI	RAATTY	3 cut(s)	92, 625, 636
ArsI	GACNNNNNNTTYG	2 cut(s)	585, 617
Asp700I	GAANNNNTTC	1 cut(s)	618
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	3 cut(s)	304, 514, 520
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	731
BarI	GAAGNNNNNNTAC	2 cut(s)	692, 724
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	23, 456
BbvI	GCAGC	5 cut(s)	123, 126, 338, 637, 774
BccI	CCATC	2 cut(s)	113, 538
BceAI	ACGGC	2 cut(s)	44, 676
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BclI	TGATCA	3 cut(s)	163, 510, 630
BcoDI	GTCTC	1 cut(s)	254
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	4 cut(s)	74, 249, 257, 830
BisI	GCNGC	9 cut(s)	15, 42, 112, 115, 333, 352, 651, 788, 791
BlsI	GCNGC	9 cut(s)	16, 43, 113, 116, 334, 353, 652, 789, 792
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	2 cut(s)	690, 733
BmsI	GCATC	3 cut(s)	801, 815, 831
BoxI	GACNNNNGTC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	472
Bsa29I	ATCGAT	1 cut(s)	809
BsaHI	GRCGYC	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	692, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 423
Bse3DI	GCAATG	2 cut(s)	150, 391
BseCI	ATCGAT	1 cut(s)	809
BseDI	CCNNGG	2 cut(s)	692, 794
BseGI	GGATG	2 cut(s)	166, 472
BseLI	CCNNNNNNNGG	2 cut(s)	361, 423
BseMI	GCAATG	2 cut(s)	150, 391
BseRI	GAGGAG	1 cut(s)	439
BseX3I	CGGCCG	1 cut(s)	791
BseXI	GCAGC	5 cut(s)	123, 126, 338, 637, 774
BsgI	GTGCAG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	794
BshFI	GGCC	5 cut(s)	5, 176, 691, 793, 799
BshNI	GGYRCC	1 cut(s)	731
BshVI	ATCGAT	1 cut(s)	809
BsiEI	CGRYCG	1 cut(s)	794
BsiHKAI	GWGCWC	2 cut(s)	23, 456
BsiSI	CCGG	5 cut(s)	54, 177, 346, 372, 434
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	361, 423
BsmAI	GTCTC	1 cut(s)	254
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	5 cut(s)	5, 176, 691, 793, 799
Bsp1286I	GDGCHC	2 cut(s)	23, 456
Bsp143I	GATC	4 cut(s)	163, 510, 630, 781
BspACI	CCGC	7 cut(s)	14, 41, 311, 318, 332, 758, 790
BspANI	GGCC	5 cut(s)	5, 176, 691, 793, 799
BspDI	ATCGAT	1 cut(s)	809
BspLI	GGNNCC	2 cut(s)	690, 733
BspPI	GGATC	1 cut(s)	789
BspT107I	GGYRCC	1 cut(s)	731
BsrDI	GCAATG	2 cut(s)	150, 391
BssECI	CCNNGG	2 cut(s)	692, 794
BssMI	GATC	4 cut(s)	163, 510, 630, 781
BssNI	GRCGYC	1 cut(s)	749
Bst4CI	ACNGT	3 cut(s)	292, 401, 820
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	749
BstAPI	GCANNNNNTGC	1 cut(s)	381
BstC8I	GCNNGC	5 cut(s)	19, 377, 556, 717, 736
BstDSI	CCRYGG	1 cut(s)	692
BstF5I	GGATG	2 cut(s)	166, 472
BstKTI	GATC	4 cut(s)	166, 513, 633, 784
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	4 cut(s)	163, 510, 630, 781
BstMCI	CGRYCG	1 cut(s)	794
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 23, 351, 381, 688, 796, 850
BstNSI	RCATGY	1 cut(s)	715
BstPAI	GACNNNNGTC	1 cut(s)	84
BstV1I	GCAGC	5 cut(s)	123, 126, 338, 637, 774
BstV2I	GAAGAC	1 cut(s)	84
BstZI	CGGCCG	1 cut(s)	791
Bsu15I	ATCGAT	1 cut(s)	809
BsuRI	GGCC	5 cut(s)	5, 176, 691, 793, 799
BsuTUI	ATCGAT	1 cut(s)	809
BtgI	CCRYGG	1 cut(s)	692
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	166, 472
BtsI	GCAGTG	2 cut(s)	21, 853
BtsIMutI	CAGTG	3 cut(s)	21, 406, 853
Cac8I	GCNNGC	5 cut(s)	19, 377, 556, 717, 736
Cfr13I	GGNCC	1 cut(s)	689
ClaI	ATCGAT	1 cut(s)	809
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	3 cut(s)	58, 685, 712
CviQI	GTAC	1 cut(s)	709
DpnI	GATC	4 cut(s)	165, 512, 632, 783
DpnII	GATC	4 cut(s)	163, 510, 630, 781
EaeI	YGGCCR	2 cut(s)	3, 791
EagI	CGGCCG	1 cut(s)	791
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	791
Eco32I	GATATC	1 cut(s)	154
Eco52I	CGGCCG	1 cut(s)	791
Eco57I	CTGAAG	2 cut(s)	429, 511
EcoRI	GAATTC	1 cut(s)	92
EcoRV	GATATC	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	3 cut(s)	61, 688, 715
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	57, 684, 711
FauNDI	CATATG	1 cut(s)	407
FbaI	TGATCA	3 cut(s)	163, 510, 630
Fnu4HI	GCNGC	9 cut(s)	15, 42, 112, 115, 333, 352, 651, 788, 791
FokI	GGATG	2 cut(s)	173, 479
Fsp4HI	GCNGC	9 cut(s)	15, 42, 112, 115, 333, 352, 651, 788, 791
FspBI	CTAG	4 cut(s)	74, 249, 257, 830
GluI	GCNGC	9 cut(s)	15, 42, 112, 115, 333, 352, 651, 788, 791
HaeIII	GGCC	5 cut(s)	5, 176, 691, 793, 799
HapII	CCGG	5 cut(s)	54, 177, 346, 372, 434
Hin1I	GRCGYC	1 cut(s)	749
Hin1II	CATG	3 cut(s)	61, 688, 715
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	5 cut(s)	54, 177, 346, 372, 434
HphI	GGTGA	3 cut(s)	304, 514, 520
Hpy166II	GTNNAC	2 cut(s)	475, 753
Hpy188I	TCNGA	2 cut(s)	530, 781
Hpy188III	TCNNGA	7 cut(s)	74, 89, 131, 167, 257, 447, 590
Hpy8I	GTNNAC	2 cut(s)	475, 753
Hpy99I	CGWCG	2 cut(s)	563, 751
HpyAV	CCTTC	5 cut(s)	289, 322, 453, 661, 796
HpyCH4III	ACNGT	3 cut(s)	292, 401, 820
HpyCH4IV	ACGT	2 cut(s)	236, 749
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 23, 351, 381, 688, 796, 850
HpySE526I	ACGT	2 cut(s)	236, 749
Hsp92I	GRCGYC	1 cut(s)	749
Hsp92II	CATG	3 cut(s)	61, 688, 715
Ksp22I	TGATCA	3 cut(s)	163, 510, 630
Kzo9I	GATC	4 cut(s)	163, 510, 630, 781
LmnI	GCTCC	2 cut(s)	273, 348
Lsp1109I	GCAGC	5 cut(s)	123, 126, 338, 637, 774
LweI	GCATC	3 cut(s)	801, 815, 831
MaeI	CTAG	4 cut(s)	74, 249, 257, 830
MaeII	ACGT	2 cut(s)	236, 749
MaeIII	GTNAC	3 cut(s)	104, 277, 392
MalI	GATC	4 cut(s)	165, 512, 632, 783
MboI	GATC	4 cut(s)	163, 510, 630, 781
MboII	GAAGA	4 cut(s)	89, 182, 277, 685
MhlI	GDGCHC	2 cut(s)	23, 456
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	92, 478, 625, 636
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	308
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	618
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	575
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	787
MspI	CCGG	5 cut(s)	54, 177, 346, 372, 434
MwoI	GCNNNNNNNGC	7 cut(s)	11, 23, 351, 381, 688, 796, 850
NdeI	CATATG	1 cut(s)	407
NdeII	GATC	4 cut(s)	163, 510, 630, 781
NlaIII	CATG	3 cut(s)	61, 688, 715
NlaIV	GGNNCC	2 cut(s)	690, 733
NmeAIII	GCCGAG	2 cut(s)	559, 819
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	715
OliI	CACNNNNGTG	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	618
PkrI	GCNGC	9 cut(s)	16, 43, 113, 116, 334, 353, 652, 789, 792
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PshAI	GACNNNNGTC	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	690, 733
PspPI	GGNCC	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	787
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
RseI	CAYNNNNRTG	1 cut(s)	575
SatI	GCNGC	9 cut(s)	15, 42, 112, 115, 333, 352, 651, 788, 791
Sau3AI	GATC	4 cut(s)	163, 510, 630, 781
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	23, 456
SetI	ASST	9 cut(s)	88, 239, 353, 488, 504, 612, 721, 752, 789
SfaNI	GCATC	3 cut(s)	801, 815, 831
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	4 cut(s)	92, 478, 625, 636
SsiI	CCGC	7 cut(s)	14, 41, 311, 318, 332, 758, 790
SspMI	CTAG	4 cut(s)	74, 249, 257, 830
TaaI	ACNGT	3 cut(s)	292, 401, 820
TaiI	ACGT	2 cut(s)	239, 752
TaqI	TCGA	4 cut(s)	150, 156, 612, 809
TasI	AATT	4 cut(s)	92, 478, 625, 636
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	4 cut(s)	17, 44, 335, 793
TscAI	CASTG	3 cut(s)	28, 406, 860
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	5 cut(s)	111, 114, 351, 650, 787
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	680
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	3 cut(s)	28, 406, 860
XapI	RAATTY	3 cut(s)	92, 625, 636
XbaI	TCTAGA	2 cut(s)	73, 256
XceI	RCATGY	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	4 cut(s)	74, 249, 257, 830
ZraI	GACGTC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.