Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003387

Physical Location & Seq

Genomic Coordinates Forward (+)

2306574 .. 2308412

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G048200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTACAACTCCTGCCACCGCTCAACAATTACTGGCGGCGAGTTTTTCCGGCATGGTTTTCGGGTTTCTTGAGGATTGTCAAGAATTCCGGGAAAGCTATAGCAGCAGCAGCGATGGAAGCCAAGAAAATGAAGCCTTCTTGCTAGATGAAGAGGAAGAAGAGGCTGGAGATCAGGAGGAGAAGGACAGGAGGTTTTGGGAAAACCAGCACCAGCTTTTACAAACGACCTTGTGCAGAACTAGTTCTCTTGAGACGAGAATTAGGAGTGTGACAAAAGAGGCGGTGAATGAGATAAATAGGGAAGGGACAGAGTGTGGTTGTGGGAAACCGATGGCTAGCGGTTGCCGGAGCTGCCTAATGAGAGAAGTTTCCGGCAGGCTTTGCAATGCTGGTTACAACAGTGCCATCTGCAAGTCTAAGTGGAGGAGTTCGCCGGATATTCCTTCAGGAGAGCACACATTTATTGATGTGGTGGACAGTTCAAACCCTAAGAAAGGAGAGGTGAGGGTGATTATAGAACTCAACTTCAGAGCAGAGTTCGAGATGGCCAGAGCAAGCAATGAATACAATAATCTGGTGAACCGGCTTCCTGAAGTGTTTGTTGGCAAAGTTGAGAGACTACAAAACCTAATTAAAATCTTATGCTCAGCTGCAAAGAAATGCATGAAGGAGAAGAAAATGCACATGGGGCCATGGAGGAAGCAGAAGTACATGCAAGCTAAATGGCTCAGTCCCTGCAAAAGAACAACATCAACACCACTTTTGTCAGTGGGAAACTCTGGCCGGTTGCGGCCAAAGCCGAAGGAATCCATGCTAACGGTAGATTTGCTGGAGATGCTGCCTAACAGTTATTGCATCACAGCAGTTGAAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

294

Amino Acids

33.03

Weight (kDa)

6.84

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20670 AT4G32480
fragaria_vesca	FvH4_1g11850 FvH4_3g09070 FvH4_6g26340
malus_domestica	MD05G1338400.v1.1 MD06G1071700.v1.1 MD09G1246100.v1.1 MD10G1293600.v1.1 MD17G1238700.v1.1
prunus_persica	Prupe.3G131700_v2.0.a1 Prupe.4G048200_v2.0.a1
pyrus_communis	pycom05g28980 pycom09g16360 pycom10g24550 pycom17g24280
rosa_chinensis	RchiOBHm_Chr2g0126781 RchiOBHm_Chr5g0008561
rosa_laevigata	RLG00000018922 RLG00000031583
rosa_multiflora	Rmu_sc0000007.1_g000008 Rmu_sc0001665.1_g000018
rosa_roxburghii	Rroxscaffold_1G00067980 Rroxscaffold_2G00116980
rosa_rugosa	Rorug02G0264700 Rorug04G0436700
rosa_samantha	Rh2AG321900 Rh2BG329800 Rh2CG309700 Rh2DG349100 Rh5AG065500 Rh5BG063000 Rh5CG073100 Rh5DG063200
rosa_wichuraiana	Rw2G026090 Rw5G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	23
AciI	CCGC	5 cut(s)	21, 38, 284, 342, 793
AcoI	YGGCCR	3 cut(s)	549, 784, 794
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	3 cut(s)	432, 514, 615
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	486, 872
AhlI	ACTAGT	1 cut(s)	242
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	5 cut(s)	99, 217, 354, 653, 722
AluI	AGCT	5 cut(s)	99, 217, 354, 653, 722
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	2 cut(s)	248, 613
AlwNI	CAGNNNCTG	1 cut(s)	738
AoxI	GGCC	4 cut(s)	549, 692, 784, 794
ApeKI	GCWGC	6 cut(s)	105, 108, 111, 354, 653, 841
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	692
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	4 cut(s)	298, 517, 523, 592
AsuNHI	GCTAGC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	551
BarI	GAAGNNNNNNTAC	2 cut(s)	695, 727
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	6 cut(s)	117, 120, 123, 341, 640, 828
BccI	CCATC	4 cut(s)	110, 328, 416, 541
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	248, 613
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	3 cut(s)	146, 243, 339
BfmI	CTRYAG	1 cut(s)	100
BisI	GCNGC	8 cut(s)	39, 106, 109, 112, 355, 654, 794, 842
BlpI	GCTNAGC	1 cut(s)	649
BlsI	GCNGC	8 cut(s)	40, 107, 110, 113, 356, 655, 795, 843
Bme1390I	CCNGG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	1 cut(s)	693
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	828, 867
BmtI	GCTAGC	1 cut(s)	342
BpmI	CTGGAG	2 cut(s)	189, 854
Bpu1102I	GCTNAGC	1 cut(s)	649
BpuEI	CTTGAG	2 cut(s)	92, 272
BpuMI	CCSGG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	2 cut(s)	585, 786
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	2 cut(s)	394, 568
BseDI	CCNNGG	1 cut(s)	695
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	2 cut(s)	394, 568
BseMII	CTCAG	2 cut(s)	663, 745
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	194, 442
BseXI	GCAGC	6 cut(s)	117, 120, 123, 341, 640, 828
BsgI	GTGCAG	1 cut(s)	256
BshFI	GGCC	4 cut(s)	551, 694, 786, 796
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	7 cut(s)	51, 91, 349, 375, 437, 586, 787
BslFI	GGGAC	2 cut(s)	322, 720
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	248, 613
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	2 cut(s)	322, 720
BsnI	GGCC	4 cut(s)	551, 694, 786, 796
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	172
Bsp1720I	GCTNAGC	1 cut(s)	649
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	5 cut(s)	21, 38, 284, 342, 793
BspANI	GGCC	4 cut(s)	551, 694, 786, 796
BspCNI	CTCAG	2 cut(s)	662, 744
BspLI	GGNNCC	1 cut(s)	693
BspOI	GCTAGC	1 cut(s)	342
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	394, 568
BsrFI	RCCGGY	2 cut(s)	585, 786
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	2 cut(s)	585, 786
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	695
Bst4CI	ACNGT	4 cut(s)	404, 482, 823, 851
Bst6I	CTCTTC	2 cut(s)	147, 156
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstC8I	GCNNGC	4 cut(s)	340, 380, 559, 720
BstDEI	CTNAG	4 cut(s)	420, 492, 649, 731
BstDSI	CCRYGG	1 cut(s)	695
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	2 cut(s)	248, 613
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	8 cut(s)	105, 111, 120, 354, 384, 691, 799, 838
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	6 cut(s)	117, 120, 123, 341, 640, 828
BsuRI	GGCC	4 cut(s)	551, 694, 786, 796
BtgI	CCRYGG	1 cut(s)	695
BtgZI	GCGATG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	409, 777
Cac8I	GCNNGC	4 cut(s)	340, 380, 559, 720
CaiI	CAGNNNCTG	1 cut(s)	738
Cfr10I	RCCGGY	2 cut(s)	585, 786
Cfr13I	GGNCC	1 cut(s)	692
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	6 cut(s)	55, 667, 688, 696, 715, 814
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	4 cut(s)	420, 492, 649, 731
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EaeI	YGGCCR	3 cut(s)	549, 784, 794
Eam1104I	CTCTTC	2 cut(s)	147, 156
EarI	CTCTTC	2 cut(s)	147, 156
Eco130I	CCWWGG	1 cut(s)	695
Eco57I	CTGAAG	3 cut(s)	432, 514, 615
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	695
EcoT22I	ATGCAT	1 cut(s)	668
ErhI	CCWWGG	1 cut(s)	695
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	6 cut(s)	58, 670, 691, 699, 718, 817
FaiI	YATR	9 cut(s)	56, 102, 518, 646, 668, 689, 697, 716, 815
FaqI	GGGAC	2 cut(s)	322, 720
FatI	CATG	6 cut(s)	54, 666, 687, 695, 714, 813
Fnu4HI	GCNGC	8 cut(s)	39, 106, 109, 112, 355, 654, 794, 842
Fsp4HI	GCNGC	8 cut(s)	39, 106, 109, 112, 355, 654, 794, 842
FspBI	CTAG	3 cut(s)	146, 243, 339
GluI	GCNGC	8 cut(s)	39, 106, 109, 112, 355, 654, 794, 842
GsuI	CTGGAG	2 cut(s)	189, 854
HaeIII	GGCC	4 cut(s)	551, 694, 786, 796
HapII	CCGG	7 cut(s)	51, 91, 349, 375, 437, 586, 787
Hin1II	CATG	6 cut(s)	58, 670, 691, 699, 718, 817
HinfI	GANTC	1 cut(s)	809
HpaII	CCGG	7 cut(s)	51, 91, 349, 375, 437, 586, 787
HphI	GGTGA	4 cut(s)	298, 517, 523, 592
Hpy166II	GTNNAC	2 cut(s)	478, 583
Hpy188I	TCNGA	1 cut(s)	533
Hpy188III	TCNNGA	7 cut(s)	71, 83, 176, 251, 450, 544, 593
Hpy8I	GTNNAC	2 cut(s)	478, 583
HpyAV	CCTTC	6 cut(s)	148, 178, 299, 456, 664, 799
HpyCH4III	ACNGT	4 cut(s)	404, 482, 823, 851
HpyCH4V	TGCA	9 cut(s)	237, 387, 414, 656, 666, 685, 718, 741, 858
HpyF10VI	GCNNNNNNNGC	8 cut(s)	105, 111, 120, 354, 384, 691, 799, 838
HpyF3I	CTNAG	4 cut(s)	420, 492, 649, 731
Hsp92II	CATG	6 cut(s)	58, 670, 691, 699, 718, 817
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	6 cut(s)	117, 120, 123, 341, 640, 828
LweI	GCATC	2 cut(s)	828, 867
MaeI	CTAG	3 cut(s)	146, 243, 339
MaeIII	GTNAC	2 cut(s)	271, 395
MalI	GATC	1 cut(s)	174
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	164, 170, 173, 688
MhlI	GDGCHC	1 cut(s)	459
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	4 cut(s)	29, 86, 261, 633
MluNI	TGGCCA	1 cut(s)	551
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	668
MroXI	GAANNNNTTC	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	1 cut(s)	636
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	7 cut(s)	51, 91, 349, 375, 437, 586, 787
MspR9I	CCNGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	8 cut(s)	105, 111, 120, 354, 384, 691, 799, 838
NciI	CCSGG	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	695
NdeII	GATC	1 cut(s)	172
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	6 cut(s)	58, 670, 691, 699, 718, 817
NlaIV	GGNNCC	1 cut(s)	693
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	668
NspI	RCATGY	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	809
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	8 cut(s)	40, 107, 110, 113, 356, 655, 795, 843
PspN4I	GGNNCC	1 cut(s)	693
PspPI	GGNCC	1 cut(s)	692
PstNI	CAGNNNCTG	1 cut(s)	738
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	8 cut(s)	39, 106, 109, 112, 355, 654, 794, 842
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	692
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	459
SetI	ASST	9 cut(s)	101, 197, 219, 233, 356, 507, 633, 655, 724
SfaNI	GCATC	2 cut(s)	828, 867
SfcI	CTRYAG	1 cut(s)	100
SmlI	CTYRAG	2 cut(s)	71, 251
SmoI	CTYRAG	2 cut(s)	71, 251
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	4 cut(s)	29, 86, 261, 633
SsiI	CCGC	5 cut(s)	21, 38, 284, 342, 793
SspMI	CTAG	3 cut(s)	146, 243, 339
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	4 cut(s)	404, 482, 823, 851
TaqI	TCGA	1 cut(s)	543
TasI	AATT	4 cut(s)	29, 86, 261, 633
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	2 cut(s)	41, 796
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	2 cut(s)	409, 777
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	6 cut(s)	105, 108, 111, 354, 653, 841
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	4 cut(s)	147, 165, 579, 683
TspRI	CASTG	2 cut(s)	409, 777
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	718
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	3 cut(s)	146, 243, 339
Zsp2I	ATGCAT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.