Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003387

Physical Location & Seq

Genomic Coordinates Reverse (-)

13648066 .. 13649789

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G131700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCCGGAGCGATGGCTAGAATTCCGGTGATTCGCCGGAGCTCCGACGATATTTTGGAATTTCCCGGCAGCGCTGTAAGTCTCGCCGACATGGTTTTGGGTTTCATCGAGCAAGTCGAGGTGTCGCCAGAGAATATTACCTCTGGCTCCGATGAGGATGAGGAGAATTCTTTCAGTGTGGAAGAGAACAAGGCATTTTGGGAAGAACAAGACCAACTTCTCCAGGCAACATTGTGCAAGAGCAGTGGCATTGAGACCAAAATTCGGCAGGCCACCAAGGAGGCGTTACGGGACATAAACTCGTCGGCCGCAGAATATTGCGTGTGCTCGAAGCCTGTGTTTGGCGGTTGCCGGAGTTGTTTGCGCAACGAATTATGCAATCGGCTCATAGATTTTGGGTACAATTGTGTCATTTGCAAGTCCAAATGGAGAAGCTCAACAAGTACCCCAGCAGGAGAGCATACTTATTTGGAAGTGCTGGACACAAGTTCAAAGAGAGGGGAGATTAGGGTGGTGATTGAGCTGAATTTCCGAGCTGAGTTTGAGATGGCCAGAGCCAGCGAAAACTACAACAGATTAATCAGCTGGCTGCCCGAAGTGTTTGTTGGGAAAGCCGAAAGACTAAGAGCCTTGATCAAGATTCTGTGCTGCGCAGCCAAAAAATGTATGAAGGAGAAGAAAATGCACTTGGGACCATGGAGGAAGCACAAGTACATGCAAGCCAAGTGGTTCGGGACGTTCGAGCGGTCCACGCCAGGGTCCTTGCCGGTCAGATTTGCAAACGGGCCGCCCAAGCCAAAGGCTTCCATGCTGACCTTTGATTTGCTGGAGGCCATGCCTGGCTTGCATTGCACTGCAGTTGAAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

291

Amino Acids

32.52

Weight (kDa)

7.46

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20670 AT4G32480
fragaria_vesca	FvH4_1g11850 FvH4_3g09070 FvH4_6g26340
malus_domestica	MD05G1338400.v1.1 MD06G1071700.v1.1 MD09G1246100.v1.1 MD10G1293600.v1.1 MD17G1238700.v1.1
prunus_persica	Prupe.3G131700_v2.0.a1 Prupe.4G048200_v2.0.a1
pyrus_communis	pycom05g28980 pycom09g16360 pycom10g24550 pycom17g24280
rosa_chinensis	RchiOBHm_Chr2g0126781 RchiOBHm_Chr5g0008561
rosa_laevigata	RLG00000018922 RLG00000031583
rosa_multiflora	Rmu_sc0000007.1_g000008 Rmu_sc0001665.1_g000018
rosa_roxburghii	Rroxscaffold_1G00067980 Rroxscaffold_2G00116980
rosa_rugosa	Rorug02G0264700 Rorug04G0436700
rosa_samantha	Rh2AG321900 Rh2BG329800 Rh2CG309700 Rh2DG349100 Rh5AG065500 Rh5BG063000 Rh5CG073100 Rh5DG063200
rosa_wichuraiana	Rw2G026090 Rw5G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	365, 652
AccBSI	CCGCTC	1 cut(s)	745
AciI	CCGC	4 cut(s)	309, 345, 745, 788
AcoI	YGGCCR	3 cut(s)	3, 306, 549
AcsI	RAATTY	5 cut(s)	21, 59, 166, 261, 526
AfaI	GTAC	3 cut(s)	401, 445, 713
AfeI	AGCGCT	1 cut(s)	73
AfiI	CCNNNNNNNGG	3 cut(s)	264, 341, 756
AgsI	TTSAA	2 cut(s)	492, 863
AjnI	CCWGG	3 cut(s)	222, 754, 838
AjuI	GAANNNNNNNTTGG	4 cut(s)	588, 620, 671, 703
AluBI	AGCT	5 cut(s)	42, 435, 523, 536, 585
AluI	AGCT	5 cut(s)	42, 435, 523, 536, 585
Alw21I	GWGCWC	2 cut(s)	44, 329
Alw26I	GTCTC	2 cut(s)	86, 248
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	6 cut(s)	3, 270, 306, 549, 785, 831
ApeKI	GCWGC	4 cut(s)	69, 589, 648, 653
ApoI	RAATTY	5 cut(s)	21, 59, 166, 261, 526
ArsI	GACNNNNNNTTYG	2 cut(s)	805, 837
AseI	ATTAAT	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	74, 366, 653
AspS9I	GGNCC	4 cut(s)	692, 747, 759, 785
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	40, 526
AvaII	GGWCC	3 cut(s)	692, 747, 759
BaeI	ACNNNNGTAYC	2 cut(s)	391, 424
BalI	TGGCCA	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	44
BarI	GAAGNNNNNNTAC	2 cut(s)	695, 727
Bbv12I	GWGCWC	2 cut(s)	44, 329
BbvI	GCAGC	4 cut(s)	81, 576, 635, 665
BccI	CCATC	2 cut(s)	7, 541
BciT130I	CCWGG	3 cut(s)	224, 756, 840
BclI	TGATCA	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	86, 248
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	855
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	6 cut(s)	70, 309, 590, 649, 654, 788
BlsI	GCNGC	6 cut(s)	71, 310, 591, 650, 655, 789
Bme1390I	CCNGG	4 cut(s)	66, 224, 756, 840
Bme18I	GGWCC	3 cut(s)	692, 747, 759
BmgT120I	GGNCC	4 cut(s)	692, 747, 759, 785
BmiI	GGNNCC	3 cut(s)	148, 693, 760
BmrFI	CCNGG	4 cut(s)	66, 224, 756, 840
BpmI	CTGGAG	2 cut(s)	206, 848
BpuMI	CCSGG	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	276, 695, 755
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 341, 756
Bse118I	RCCGGY	1 cut(s)	766
Bse3DI	GCAATG	1 cut(s)	847
BseBI	CCWGG	3 cut(s)	224, 756, 840
BseDI	CCNNGG	3 cut(s)	276, 695, 755
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	264, 341, 756
BseMI	GCAATG	1 cut(s)	847
BseMII	CTCAG	1 cut(s)	528
BseRI	GAGGAG	1 cut(s)	176
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	4 cut(s)	81, 576, 635, 665
BseYI	CCCAGC	1 cut(s)	448
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	6 cut(s)	5, 272, 308, 551, 787, 833
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	44, 329
BsiSI	CCGG	6 cut(s)	6, 26, 37, 66, 352, 767
BslFI	GGGAC	3 cut(s)	305, 705, 748
BslI	CCNNNNNNNGG	3 cut(s)	264, 341, 756
BsmAI	GTCTC	2 cut(s)	86, 248
BsmFI	GGGAC	3 cut(s)	305, 705, 748
BsnI	GGCC	6 cut(s)	5, 272, 308, 551, 787, 833
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	44, 329
Bsp143I	GATC	1 cut(s)	633
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	4 cut(s)	309, 345, 745, 788
BspANI	GGCC	6 cut(s)	5, 272, 308, 551, 787, 833
BspCNI	CTCAG	1 cut(s)	529
BspLI	GGNNCC	3 cut(s)	148, 693, 760
BspMAI	CTGCAG	1 cut(s)	859
BspTNI	GGTCTC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	745
BsrDI	GCAATG	1 cut(s)	847
BsrFI	RCCGGY	1 cut(s)	766
BssAI	RCCGGY	1 cut(s)	766
BssECI	CCNNGG	3 cut(s)	276, 695, 755
BssMI	GATC	1 cut(s)	633
BssT1I	CCWWGG	2 cut(s)	276, 695
Bst2UI	CCWGG	3 cut(s)	224, 756, 840
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	5 cut(s)	270, 559, 587, 720, 845
BstDEI	CTNAG	2 cut(s)	537, 623
BstDSI	CCRYGG	1 cut(s)	695
BstF5I	GGATG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	3 cut(s)	74, 366, 653
BstKTI	GATC	1 cut(s)	636
BstMAI	GTCTC	2 cut(s)	86, 248
BstMBI	GATC	1 cut(s)	633
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	4 cut(s)	751, 793, 844, 849
BstNI	CCWGG	3 cut(s)	224, 756, 840
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	4 cut(s)	64, 222, 754, 838
BstSFI	CTRYAG	1 cut(s)	855
BstV1I	GCAGC	4 cut(s)	81, 576, 635, 665
BstZI	CGGCCG	1 cut(s)	306
BsuRI	GGCC	6 cut(s)	5, 272, 308, 551, 787, 833
BtgI	CCRYGG	1 cut(s)	695
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	2 cut(s)	250, 852
BtsIMutI	CAGTG	3 cut(s)	181, 250, 852
Cac8I	GCNNGC	5 cut(s)	270, 559, 587, 720, 845
CfoI	GCGC	3 cut(s)	74, 366, 653
Cfr10I	RCCGGY	1 cut(s)	766
Cfr13I	GGNCC	4 cut(s)	692, 747, 759, 785
Csp6I	GTAC	3 cut(s)	400, 444, 712
CspCI	CAANNNNNGTGG	4 cut(s)	226, 261, 707, 742
CviAII	CATG	5 cut(s)	91, 696, 715, 808, 835
CviQI	GTAC	3 cut(s)	400, 444, 712
DdeI	CTNAG	2 cut(s)	537, 623
DpnI	GATC	1 cut(s)	635
DpnII	GATC	1 cut(s)	633
EaeI	YGGCCR	3 cut(s)	3, 306, 549
EagI	CGGCCG	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	42
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	276, 695
Eco24I	GRGCYC	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	3 cut(s)	692, 747, 759
Eco47III	AGCGCT	1 cut(s)	73
Eco52I	CGGCCG	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	759
EcoRI	GAATTC	2 cut(s)	21, 166
EcoRII	CCWGG	3 cut(s)	222, 754, 838
EcoT14I	CCWWGG	2 cut(s)	276, 695
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	276, 695
FaeI	CATG	5 cut(s)	94, 699, 718, 811, 838
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	3 cut(s)	305, 705, 748
FatI	CATG	5 cut(s)	90, 695, 714, 807, 834
FbaI	TGATCA	1 cut(s)	633
Fnu4HI	GCNGC	6 cut(s)	70, 309, 590, 649, 654, 788
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	6 cut(s)	70, 309, 590, 649, 654, 788
FspBI	CTAG	1 cut(s)	18
FspI	TGCGCA	2 cut(s)	365, 652
GlaI	GCGC	3 cut(s)	73, 365, 652
GluI	GCNGC	6 cut(s)	70, 309, 590, 649, 654, 788
GsaI	CCCAGC	1 cut(s)	452
GsuI	CTGGAG	2 cut(s)	206, 848
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	6 cut(s)	5, 272, 308, 551, 787, 833
HapII	CCGG	6 cut(s)	6, 26, 37, 66, 352, 767
HhaI	GCGC	3 cut(s)	74, 366, 653
Hin1II	CATG	5 cut(s)	94, 699, 718, 811, 838
Hin6I	GCGC	3 cut(s)	72, 364, 651
HinP1I	GCGC	3 cut(s)	72, 364, 651
HinfI	GANTC	2 cut(s)	31, 640
HpaII	CCGG	6 cut(s)	6, 26, 37, 66, 352, 767
HphI	GGTGA	2 cut(s)	40, 526
Hpy166II	GTNNAC	1 cut(s)	750
Hpy188I	TCNGA	4 cut(s)	46, 151, 533, 773
Hpy188III	TCNNGA	2 cut(s)	637, 733
Hpy8I	GTNNAC	1 cut(s)	750
Hpy99I	CGWCG	2 cut(s)	50, 307
HpyAV	CCTTC	1 cut(s)	664
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	9 cut(s)	237, 378, 417, 685, 718, 779, 847, 852, 857
HpyF10VI	GCNNNNNNNGC	4 cut(s)	751, 793, 844, 849
HpyF3I	CTNAG	2 cut(s)	537, 623
HpySE526I	ACGT	1 cut(s)	737
Hsp92II	CATG	5 cut(s)	94, 699, 718, 811, 838
HspAI	GCGC	3 cut(s)	72, 364, 651
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	1 cut(s)	633
LmnI	GCTCC	4 cut(s)	8, 39, 47, 152
Lsp1109I	GCAGC	4 cut(s)	81, 576, 635, 665
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	1 cut(s)	635
MbiI	CCGCTC	1 cut(s)	745
MboI	GATC	1 cut(s)	633
MboII	GAAGA	3 cut(s)	194, 215, 688
MfeI	CAATTG	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	44, 329
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	7 cut(s)	21, 59, 166, 261, 371, 403, 526
MluNI	TGGCCA	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	8 cut(s)	112, 148, 151, 154, 274, 491, 693, 823
Mox20I	TGGCCA	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	585
MspI	CCGG	6 cut(s)	6, 26, 37, 66, 352, 767
MspR9I	CCNGG	4 cut(s)	66, 224, 756, 840
MunI	CAATTG	1 cut(s)	403
MvaI	CCWGG	3 cut(s)	224, 756, 840
MwoI	GCNNNNNNNGC	4 cut(s)	751, 793, 844, 849
NciI	CCSGG	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	695
NdeII	GATC	1 cut(s)	633
NlaIII	CATG	5 cut(s)	94, 699, 718, 811, 838
NlaIV	GGNNCC	3 cut(s)	148, 693, 760
NsbI	TGCGCA	2 cut(s)	365, 652
NspI	RCATGY	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 738
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	31, 640
PkrI	GCNGC	6 cut(s)	71, 310, 591, 650, 655, 789
PpuMI	RGGWCCY	1 cut(s)	759
PshBI	ATTAAT	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	759
Psp6I	CCWGG	3 cut(s)	222, 754, 838
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	3 cut(s)	222, 754, 838
PspN4I	GGNNCC	3 cut(s)	148, 693, 760
PspPI	GGNCC	4 cut(s)	692, 747, 759, 785
PspPPI	RGGWCCY	1 cut(s)	759
PstI	CTGCAG	1 cut(s)	859
PvuII	CAGCTG	1 cut(s)	585
RsaI	GTAC	3 cut(s)	401, 445, 713
RsaNI	GTAC	3 cut(s)	400, 444, 712
SacI	GAGCTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	6 cut(s)	70, 309, 590, 649, 654, 788
Sau3AI	GATC	1 cut(s)	633
Sau96I	GGNCC	4 cut(s)	692, 747, 759, 785
ScrFI	CCNGG	4 cut(s)	66, 224, 756, 840
SduI	GDGCHC	2 cut(s)	44, 329
SetI	ASST	9 cut(s)	44, 123, 143, 437, 525, 538, 587, 740, 818
SfcI	CTRYAG	1 cut(s)	855
SinI	GGWCC	3 cut(s)	692, 747, 759
Sse9I	AATT	7 cut(s)	21, 59, 166, 261, 371, 403, 526
SsiI	CCGC	4 cut(s)	309, 345, 745, 788
SspI	AATATT	2 cut(s)	136, 317
SspMI	CTAG	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	4 cut(s)	64, 222, 754, 838
StyI	CCWWGG	2 cut(s)	276, 695
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	4 cut(s)	108, 117, 329, 741
TasI	AATT	7 cut(s)	21, 59, 166, 261, 371, 403, 526
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	2 cut(s)	311, 790
TfiI	GAWTC	2 cut(s)	31, 640
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	3 cut(s)	181, 250, 859
TseI	GCWGC	4 cut(s)	69, 589, 648, 653
TspDTI	ATGAA	2 cut(s)	94, 683
TspRI	CASTG	3 cut(s)	181, 250, 859
VpaK11BI	GGWCC	3 cut(s)	692, 747, 759
VspI	ATTAAT	1 cut(s)	578
XapI	RAATTY	5 cut(s)	21, 59, 166, 261, 526
XceI	RCATGY	1 cut(s)	718
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.