Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Reverse (-)

9173384 .. 9179166

Gene Structure 5783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3012 bp

ATGGGGAAAAACAAGAGAGAGAGGAAAGATGGAGAAGAGAAATCTCCACACGCTGCCGCCACTGTTTGCGTCTCTGGCTTGCCTTATTCCATCACCAACGCACAGCTTGAAGAAGCCTTTAGTGAAGTTGGCCCAGTCAGGCGTTGCTTTCTGGTCACAAATAAAGGGTCTGATGAACACCGCGGCTTTGCGTTTGTTAAATTTGCTTTACAAGAAGATGTTAATCGTGCCATTGAGTTGAAGAACGGTTCTACTGTTGGGGGCCGTAGGATTACTGTTAAACAGGCTGCACATCGACCTTCTCTTCAAGAGCGTCGAACAAAAGCAGCTGAAGGGATCTCTGTACCTGATAATTCCCAGGGACAGAGTGACAAGGACACTTCAATCCCTGAGACAGACGAGAAAGTATCTCCACCCGAGAAAAAATTAGAGAAGCCAGTTGAGCGCAAAAAAGTAGAGAAACCAATTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAAAAAGCAGAGAAGCCAATTGAGCTCAAACAAGTAGAGAAGCCATTTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAACAAGTAGAGAAGCCAATTGAGCGCAAAAGACCAACAAAGCTTCATGTTGATTTACCTGATAAAGAAACATGTTCAGATAAGCAAAGAGTTGCAAGAACTGTAATATTTGGTGGGCTTGCTAATGCTGAGATGGCAGAGGTAGTCCATAGTCGAGTCAAAGAGATTGGCACTGTGTGCTCTGTCAGATATCCCCTACCCAAAGAAGAGCTCCAACAAAATGGTCTTACCCAAGACGGATGCAGGGCAGAAGCATCAGCTGTTCTCTTTACGAGTGTCAAATCTGCTTGTGCCGCTGTTGCAAAATTACATCAAACAGAAGTAAAGGGAAATCTCATTTGGGCTCGTCAGCTTGGTGGGGAGGGTTCAAAGGCTCAGAAGTGGAAACTTATTATCCGAAATCTTCCTTTCCAGGCTAAACCTAGTGATATTAAAGTGGTCTTTTCAGCAGTAGGGTTTGTCTGGGATGTTTTTATTCCTAAAAATTTTGAAACTGGGCTACCTAAGGGTTTTGCATTTGTCAAATTCACGTGTAAGAAAGATGCAGCAAATGCAATTAAAAAGTTCAATGGGCACATGTTTGGTAAAAGGCCTATAGCTGTAGACTGGGCGGTACCTAAAAATATTTACAATGGTGCTGCTGATGCCACTACTGCTTCAGCAGATGGTGACAAAGAAGGAAGTGATGGGGACAGTGAAAACAGTAGTGTTGATTTGGAGGAGGTTGATGAAGCTGTAGAAAGCCACCCTCCTCCAGGAGATGATACTGATGATGATGAGGACGGCAGTAACAAACTGACTGAATCAGATGCACTGGACAAAGATGTTGGGACCGATATGAACTTTGAAGATGAAGCAGATGTTGCCAGAAAGGTTCTTAAGAACTTGCTTGCTTCTTCAAAAGGTTCTACTGCTACACCTGAGGGAGAGACAGAGGAATCGGATAAAAGTAAACTGAAAAGTTCATCAACTAAGCCAGTTGCTGACTCTTCTGGTGTATCTGAACCTTTGAAATCCGGTAAAACTAAAGTGGTGGCTCCTAAAGAGACGCAGGATAATGATGATTTTGAGAGAACTTTATTTATAAGAAACCTCCCATTTGATGTTACTAAGGAAGAAGTCAAACAGAGGTTTACAGTATTTGGGGAAGTTGAATCTTTATCCCTGGTTCTCCACAAGGTCACAAAACGGCCAGAAGGGACTGCTTTTGTCAAGTTCAAAACAGCAGATGCATCAGTTGCAGCCATTTCAGCTGCCGATACTGCCTCAGGTGTCGGTGTCCTTCTTAAAGGCAGGCAACTAAACGTTATGAGAGCTGTGGGTAAGAAAGCTGCAAAGGACATAGAACTCAAAAAGACAGAGGAGAAGAATGTTGACCATCGGAATCTTTATCTTGCTAAAGAAGGTCAGATCCTTGATGATACACCTGCTGCTGAGGGTGTGTCTGCGGAAGATATGGACAAGCGACGAAGATTGCATGAAAACAAGATGAAAATGCTTCAGTCTCCTAACTTCCATGTATCTCGGACAAGGCTTGTGATTTATAATTTGCCCAAGTCCATGAATCCAAAGCAACTAAACAGGCTCTTAGTTGATGCTGTTACCTCACGAGCTACAAAGCAGAAGCCGTGTATTCGACAGATCAAGTTCTTACAAAATGAGAAGAAAGGTAAAGTTGATACTAAGAACTACTCCCGTGGAGTTGCCTTTGTTGAGTTCACGGAGCATGAACATGCTCTTGTAGCCCTGAGAGTACTTAACAACAATCCTGAGACATTTGGTCCTCAACACCGCCCTGTCATAGAATTTGCTGTTGATAATGTCCAGAAGCTGAAGATACGAGAAGCTAAGCAGCAGCAGTTTCAGCAACGCGAGAAACACAATGAATCTGATCAGCAGCAGGCGAACGGCGAAGCACAGGCACCTGACAATAAATACAAACGAAAAACGAGGGAAGGGGATAACACTGGTCCAAGGAAAGAGAATGCAGCCAGGTTTAAGAAGGGACCACGTGAAGAGAGTAAAGAAGAAGCAAAATCCAATATAGCAGTAAAAGATAATGCAGCAGAGAAGAAGAGACCTATACGCACACAGGAAAAACCGTCTTCAAACAAGAAAGGCCAATTGATGAGACAGAAAGAGACAACTGAGAAACCAGATCCGAAAATTTCCAAAGATTTGAGCGAACCAAGGAAGAGGAAGTTCGGGGAGGATAGAGGTGAAGAGAATAGAAATGGGCAGAGGAAGAGGAAGAAGCAAGGTCAAGGTCAAGGTGGTGCAGAAGTTGTGGACAAACTTGATCTGTTGATTGAGAAATACAGGTCTAAGTTCTCGCAGAGCTCAGCCAAAACCGGCCCACAAAAACAGAGTTCCGGTCAAGTCAGGAGGTGGTTCGAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

1003

Amino Acids

112.06

Weight (kDa)

9.41

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	22 - 92	3e-17	RNA recognition motif
RRM_1	PF00076	333 - 402	7.9e-15	RNA recognition motif
RRM_1	PF00076	563 - 623	1.3e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1694, 2154
AarI	CACCTGC	1 cut(s)	2044
Acc36I	ACCTGC	1 cut(s)	2044
Acc65I	GGTACC	1 cut(s)	1222
AccB1I	GGYRCC	2 cut(s)	1222, 2530
AccI	GTMKAC	1 cut(s)	1212
AccII	CGCG	2 cut(s)	183, 2481
AciI	CCGC	7 cut(s)	57, 181, 183, 903, 1220, 2057, 2401
AclI	AACGTT	1 cut(s)	1914
AclWI	GGATC	3 cut(s)	344, 2014, 2762
AcoI	YGGCCR	1 cut(s)	1799
AcsI	RAATTY	5 cut(s)	200, 1093, 1133, 2414, 2775
AcuI	CTGAAG	4 cut(s)	351, 1251, 2093, 2462
AcvI	CACGTG	2 cut(s)	1140, 2621
AdeI	CACNNNGTG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	345, 1224, 2364
AfiI	CCNNNNNNNGG	1 cut(s)	1364
AflII	CTTAAG	1 cut(s)	1487
AflIII	ACRYGT	3 cut(s)	680, 1139, 1185
AhdI	GACNNNNNGTC	1 cut(s)	2388
AjnI	CCWGG	5 cut(s)	357, 1020, 1363, 1773, 2600
AjuI	GAANNNNNNNTTGG	2 cut(s)	931, 963
Alw21I	GWGCWC	4 cut(s)	528, 791, 822, 2951
Alw26I	GTCTC	9 cut(s)	76, 386, 1532, 1649, 2118, 2375, 2680, 2734, 2744
AlwI	GGATC	3 cut(s)	344, 2014, 2762
AlwNI	CAGNNNCTG	2 cut(s)	1592, 2440
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	6 cut(s)	130, 262, 1199, 1799, 2728, 2962
ApoI	RAATTY	5 cut(s)	200, 1093, 1133, 2414, 2775
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp718I	GGTACC	1 cut(s)	1222
AspLEI	GCGC	7 cut(s)	447, 474, 501, 555, 582, 609, 636
AspS9I	GGNCC	7 cut(s)	131, 262, 1440, 2390, 2579, 2615, 2963
AsuHPI	GGTGA	3 cut(s)	85, 1289, 2840
AsuII	TTCGAA	1 cut(s)	3003
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	4 cut(s)	1440, 2390, 2579, 2615
AxyI	CCTNAGG	3 cut(s)	1113, 1530, 1876
BaeGI	GKGCMC	1 cut(s)	1185
BanI	GGYRCC	2 cut(s)	1222, 2530
BanII	GRGCYC	4 cut(s)	528, 822, 955, 2951
BauI	CACGAG	1 cut(s)	2217
BbrPI	CACGTG	2 cut(s)	1140, 2621
BbsI	GAAGAC	1 cut(s)	2706
Bbv12I	GWGCWC	4 cut(s)	528, 791, 822, 2951
BbvCI	CCTCAGC	1 cut(s)	2043
BccI	CCATC	6 cut(s)	23, 98, 736, 1268, 1289, 1995
BceAI	ACGGC	5 cut(s)	249, 1408, 1814, 2221, 2533
BciT130I	CCWGG	5 cut(s)	359, 1022, 1365, 1775, 2602
BclI	TGATCA	1 cut(s)	2500
BcoDI	GTCTC	9 cut(s)	76, 386, 1532, 1649, 2118, 2375, 2680, 2734, 2744
BfaI	CTAG	1 cut(s)	1032
BfmI	CTRYAG	3 cut(s)	1203, 1209, 1344
BfrI	CTTAAG	1 cut(s)	1487
BfuAI	ACCTGC	1 cut(s)	2044
BlpI	GCTNAGC	2 cut(s)	2457, 2950
BmcAI	AGTACT	1 cut(s)	2364
Bme1390I	CCNGG	5 cut(s)	359, 1022, 1365, 1775, 2602
Bme18I	GGWCC	4 cut(s)	1440, 2390, 2579, 2615
BmeRI	GACNNNNNGTC	1 cut(s)	2388
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	7 cut(s)	131, 262, 1440, 2390, 2579, 2615, 2963
BmiI	GGNNCC	6 cut(s)	263, 1224, 1441, 1647, 2532, 2616
BmrFI	CCNGG	5 cut(s)	359, 1022, 1365, 1775, 2602
BmrI	ACTGGG	3 cut(s)	128, 1113, 1225
BmsI	GCATC	8 cut(s)	839, 872, 1141, 1243, 1408, 1828, 1850, 2194
BmuI	ACTGGG	3 cut(s)	128, 1113, 1225
BpiI	GAAGAC	1 cut(s)	2706
BpmI	CTGGAG	1 cut(s)	1347
Bpu10I	CCTNAGC	1 cut(s)	2043
Bpu1102I	GCTNAGC	2 cut(s)	2457, 2950
Bpu14I	TTCGAA	1 cut(s)	3003
BsaAI	YACGTR	2 cut(s)	1140, 2621
BsaBI	GATNNNNATC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	2680
BsaJI	CCNNGG	7 cut(s)	181, 357, 358, 1773, 2305, 2582, 2798
BsaWI	WCCGGW	2 cut(s)	1625, 2981
Bsc4I	CCNNNNNNNGG	1 cut(s)	1364
Bse118I	RCCGGY	1 cut(s)	2960
Bse21I	CCTNAGG	3 cut(s)	1113, 1530, 1876
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	5 cut(s)	359, 1022, 1365, 1775, 2602
BseDI	CCNNGG	7 cut(s)	181, 357, 358, 1773, 2305, 2582, 2798
BseGI	GGATG	2 cut(s)	854, 1081
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	1364
BseRI	GAGGAG	3 cut(s)	1343, 1350, 1985
BseSI	GKGCMC	1 cut(s)	1185
BsgI	GTGCAG	2 cut(s)	273, 2907
Bsh1236I	CGCG	2 cut(s)	183, 2481
BshFI	GGCC	6 cut(s)	132, 264, 1201, 1801, 2730, 2964
BshNI	GGYRCC	2 cut(s)	1222, 2530
BsiHKAI	GWGCWC	4 cut(s)	528, 791, 822, 2951
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	3 cut(s)	1626, 2961, 2982
BslFI	GGGAC	5 cut(s)	375, 1313, 1453, 1822, 2628
BslI	CCNNNNNNNGG	1 cut(s)	1364
BsmAI	GTCTC	9 cut(s)	76, 386, 1532, 1649, 2118, 2375, 2680, 2734, 2744
BsmBI	CGTCTC	2 cut(s)	76, 1649
BsmFI	GGGAC	5 cut(s)	375, 1313, 1453, 1822, 2628
BsmI	GAATGC	1 cut(s)	2599
BsnI	GGCC	6 cut(s)	132, 264, 1201, 1801, 2730, 2964
Bso31I	GGTCTC	1 cut(s)	2680
BsoBI	CYCGRG	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	3003
Bsp1286I	GDGCHC	6 cut(s)	528, 791, 822, 955, 1185, 2951
Bsp143I	GATC	6 cut(s)	336, 2019, 2250, 2500, 2767, 2908
Bsp1720I	GCTNAGC	2 cut(s)	2457, 2950
BspACI	CCGC	7 cut(s)	57, 181, 183, 903, 1220, 2057, 2401
BspANI	GGCC	6 cut(s)	132, 264, 1201, 1801, 2730, 2964
BspFNI	CGCG	2 cut(s)	183, 2481
BspLI	GGNNCC	6 cut(s)	263, 1224, 1441, 1647, 2532, 2616
BspMI	ACCTGC	1 cut(s)	2044
BspPI	GGATC	3 cut(s)	344, 2014, 2762
BspQI	GCTCTTC	1 cut(s)	810
BspT104I	TTCGAA	1 cut(s)	3003
BspT107I	GGYRCC	2 cut(s)	1222, 2530
BspTI	CTTAAG	1 cut(s)	1487
BspTNI	GGTCTC	1 cut(s)	2680
BsrFI	RCCGGY	1 cut(s)	2960
BssAI	RCCGGY	1 cut(s)	2960
BssECI	CCNNGG	7 cut(s)	181, 357, 358, 1773, 2305, 2582, 2798
BssMI	GATC	6 cut(s)	336, 2019, 2250, 2500, 2767, 2908
BssSI	CACGAG	1 cut(s)	2217
BssT1I	CCWWGG	2 cut(s)	2582, 2798
Bst2BI	CACGAG	1 cut(s)	2217
Bst2UI	CCWGG	5 cut(s)	359, 1022, 1365, 1775, 2602
Bst6I	CTCTTC	9 cut(s)	30, 309, 810, 1603, 2619, 2678, 2798, 2826, 2849
BstAFI	CTTAAG	1 cut(s)	1487
BstAPI	GCANNNNNTGC	4 cut(s)	786, 1160, 1472, 1847
BstBAI	YACGTR	2 cut(s)	1140, 2621
BstBI	TTCGAA	1 cut(s)	3003
BstC8I	GCNNGC	5 cut(s)	80, 729, 1500, 1904, 2511
BstDSI	CCRYGG	2 cut(s)	181, 2305
BstENI	CCTNNNNNAGG	1 cut(s)	1362
BstF5I	GGATG	2 cut(s)	854, 1081
BstFNI	CGCG	2 cut(s)	183, 2481
BstHHI	GCGC	7 cut(s)	447, 474, 501, 555, 582, 609, 636
BstKTI	GATC	6 cut(s)	339, 2022, 2253, 2503, 2770, 2911
BstMAI	GTCTC	9 cut(s)	76, 386, 1532, 1649, 2118, 2375, 2680, 2734, 2744
BstMBI	GATC	6 cut(s)	336, 2019, 2250, 2500, 2767, 2908
BstNI	CCWGG	5 cut(s)	359, 1022, 1365, 1775, 2602
BstNSI	RCATGY	3 cut(s)	684, 1189, 2345
BstSCI	CCNGG	5 cut(s)	357, 1020, 1363, 1773, 2600
BstSFI	CTRYAG	3 cut(s)	1203, 1209, 1344
BstSLI	GKGCMC	1 cut(s)	1185
BstUI	CGCG	2 cut(s)	183, 2481
BstV2I	GAAGAC	1 cut(s)	2706
BstX2I	RGATCY	3 cut(s)	336, 2019, 2767
BstXI	CCANNNNNNTGG	1 cut(s)	830
BstYI	RGATCY	3 cut(s)	336, 2019, 2767
Bsu36I	CCTNAGG	3 cut(s)	1113, 1530, 1876
BsuRI	GGCC	6 cut(s)	132, 264, 1201, 1801, 2730, 2964
BtgI	CCRYGG	2 cut(s)	181, 2305
BtsCI	GGATG	2 cut(s)	854, 1081
BtsIMutI	CAGTG	5 cut(s)	60, 780, 1309, 1421, 2574
BveI	ACCTGC	1 cut(s)	2044
Cac8I	GCNNGC	5 cut(s)	80, 729, 1500, 1904, 2511
CaiI	CAGNNNCTG	2 cut(s)	1592, 2440
CfoI	GCGC	7 cut(s)	447, 474, 501, 555, 582, 609, 636
Cfr10I	RCCGGY	1 cut(s)	2960
Cfr13I	GGNCC	7 cut(s)	131, 262, 1440, 2390, 2579, 2615, 2963
Cfr42I	CCGCGG	1 cut(s)	184
CseI	GACGC	3 cut(s)	58, 302, 1666
Csp6I	GTAC	3 cut(s)	344, 1223, 2363
CviAII	CATG	8 cut(s)	656, 681, 1186, 2087, 2126, 2170, 2336, 2342
CviQI	GTAC	3 cut(s)	344, 1223, 2363
DpnI	GATC	6 cut(s)	338, 2021, 2252, 2502, 2769, 2910
DpnII	GATC	6 cut(s)	336, 2019, 2250, 2500, 2767, 2908
DraIII	CACNNNGTG	1 cut(s)	786
DriI	GACNNNNNGTC	1 cut(s)	2388
EaeI	YGGCCR	1 cut(s)	1799
Eam1104I	CTCTTC	9 cut(s)	30, 309, 810, 1603, 2619, 2678, 2798, 2826, 2849
Eam1105I	GACNNNNNGTC	1 cut(s)	2388
EarI	CTCTTC	9 cut(s)	30, 309, 810, 1603, 2619, 2678, 2798, 2826, 2849
Ecl136II	GAGCTC	3 cut(s)	526, 820, 2949
Eco130I	CCWWGG	2 cut(s)	2582, 2798
Eco147I	AGGCCT	1 cut(s)	1201
Eco24I	GRGCYC	4 cut(s)	528, 822, 955, 2951
Eco31I	GGTCTC	1 cut(s)	2680
Eco32I	GATATC	1 cut(s)	800
Eco47I	GGWCC	4 cut(s)	1440, 2390, 2579, 2615
Eco53kI	GAGCTC	3 cut(s)	526, 820, 2949
Eco57I	CTGAAG	4 cut(s)	351, 1251, 2093, 2462
Eco72I	CACGTG	2 cut(s)	1140, 2621
Eco81I	CCTNAGG	3 cut(s)	1113, 1530, 1876
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	3 cut(s)	526, 820, 2949
EcoNI	CCTNNNNNAGG	1 cut(s)	1362
EcoRII	CCWGG	5 cut(s)	357, 1020, 1363, 1773, 2600
EcoRV	GATATC	1 cut(s)	800
EcoT14I	CCWWGG	2 cut(s)	2582, 2798
EcoT22I	ATGCAT	1 cut(s)	1843
EcoT38I	GRGCYC	4 cut(s)	528, 822, 955, 2951
ErhI	CCWWGG	2 cut(s)	2582, 2798
Esp3I	CGTCTC	2 cut(s)	76, 1649
FaeI	CATG	8 cut(s)	659, 684, 1189, 2090, 2129, 2173, 2339, 2345
FaqI	GGGAC	5 cut(s)	375, 1313, 1453, 1822, 2628
FatI	CATG	8 cut(s)	655, 680, 1185, 2086, 2125, 2169, 2335, 2341
FbaI	TGATCA	1 cut(s)	2500
FblI	GTMKAC	1 cut(s)	1212
FokI	GGATG	2 cut(s)	861, 1088
FriOI	GRGCYC	4 cut(s)	528, 822, 955, 2951
FspBI	CTAG	1 cut(s)	1032
GlaI	GCGC	7 cut(s)	446, 473, 500, 554, 581, 608, 635
GsuI	CTGGAG	1 cut(s)	1347
HaeIII	GGCC	6 cut(s)	132, 264, 1201, 1801, 2730, 2964
HapII	CCGG	3 cut(s)	1626, 2961, 2982
HgaI	GACGC	3 cut(s)	58, 302, 1666
HhaI	GCGC	7 cut(s)	447, 474, 501, 555, 582, 609, 636
Hin1II	CATG	8 cut(s)	659, 684, 1189, 2090, 2129, 2173, 2339, 2345
Hin6I	GCGC	7 cut(s)	445, 472, 499, 553, 580, 607, 634
HinP1I	GCGC	7 cut(s)	445, 472, 499, 553, 580, 607, 634
HincII	GTYRAC	1 cut(s)	1984
HindII	GTYRAC	1 cut(s)	1984
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	9 cut(s)	765, 1412, 1547, 1595, 1763, 1993, 2173, 2495, 3005
HpaII	CCGG	3 cut(s)	1626, 2961, 2982
HphI	GGTGA	3 cut(s)	85, 1289, 2840
Hpy166II	GTNNAC	6 cut(s)	1213, 1562, 1743, 1984, 2328, 2899
Hpy188III	TCNNGA	6 cut(s)	308, 2217, 2378, 2434, 2992, 3009
Hpy8I	GTNNAC	6 cut(s)	1213, 1562, 1743, 1984, 2328, 2899
Hpy99I	CGWCG	2 cut(s)	318, 2079
HpyAV	CCTTC	8 cut(s)	309, 326, 1280, 1799, 1901, 2006, 2558, 2605
HpyCH4IV	ACGT	3 cut(s)	1139, 1914, 2620
HpySE526I	ACGT	3 cut(s)	1139, 1914, 2620
Hsp92II	CATG	8 cut(s)	659, 684, 1189, 2090, 2129, 2173, 2339, 2345
HspAI	GCGC	7 cut(s)	445, 472, 499, 553, 580, 607, 634
KpnI	GGTACC	1 cut(s)	1226
Ksp22I	TGATCA	1 cut(s)	2500
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	336, 2019, 2250, 2500, 2767, 2908
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	3 cut(s)	825, 1651, 2332
LweI	GCATC	8 cut(s)	839, 872, 1141, 1243, 1408, 1828, 1850, 2194
MaeI	CTAG	1 cut(s)	1032
MaeII	ACGT	3 cut(s)	1139, 1914, 2620
MaeIII	GTNAC	7 cut(s)	154, 368, 1277, 1397, 1714, 1789, 2209
MalI	GATC	6 cut(s)	338, 2021, 2252, 2502, 2769, 2910
MboI	GATC	6 cut(s)	336, 2019, 2250, 2500, 2767, 2908
MfeI	CAATTG	4 cut(s)	465, 519, 627, 2732
MflI	RGATCY	3 cut(s)	336, 2019, 2767
MhlI	GDGCHC	6 cut(s)	528, 791, 822, 955, 1185, 2951
MlyI	GAGTC	2 cut(s)	774, 1589
MmeI	TCCRAC	1 cut(s)	847
Mph1103I	ATGCAT	1 cut(s)	1843
MseI	TTAA	9 cut(s)	198, 222, 279, 1041, 1167, 1488, 1896, 2367, 2607
MslI	CAYNNNNRTG	1 cut(s)	2340
MspA1I	CMGCKG	5 cut(s)	183, 329, 869, 905, 1862
MspCI	CTTAAG	1 cut(s)	1487
MspI	CCGG	3 cut(s)	1626, 2961, 2982
MspR9I	CCNGG	5 cut(s)	359, 1022, 1365, 1775, 2602
MunI	CAATTG	4 cut(s)	465, 519, 627, 2732
Mva1269I	GAATGC	1 cut(s)	2599
MvaI	CCWGG	5 cut(s)	359, 1022, 1365, 1775, 2602
MvnI	CGCG	2 cut(s)	183, 2481
NdeII	GATC	6 cut(s)	336, 2019, 2250, 2500, 2767, 2908
NlaIII	CATG	8 cut(s)	659, 684, 1189, 2090, 2129, 2173, 2339, 2345
NlaIV	GGNNCC	6 cut(s)	263, 1224, 1441, 1647, 2532, 2616
NmuCI	GTSAC	4 cut(s)	154, 368, 1277, 1789
NsiI	ATGCAT	1 cut(s)	1843
NspI	RCATGY	3 cut(s)	684, 1189, 2345
NspV	TTCGAA	1 cut(s)	3003
PaqCI	CACCTGC	1 cut(s)	2044
PasI	CCCWGGG	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	1201
PciI	ACATGT	2 cut(s)	680, 1185
PciSI	GCTCTTC	1 cut(s)	810
PctI	GAATGC	1 cut(s)	2599
PfeI	GAWTC	7 cut(s)	1412, 1547, 1763, 1993, 2173, 2495, 3005
PfoI	TCCNGGA	1 cut(s)	1363
PleI	GAGTC	2 cut(s)	773, 1589
PmaCI	CACGTG	2 cut(s)	1140, 2621
PmlI	CACGTG	2 cut(s)	1140, 2621
PpsI	GAGTC	2 cut(s)	773, 1589
Ppu21I	YACGTR	2 cut(s)	1140, 2621
PscI	ACATGT	2 cut(s)	680, 1185
PsiI	TTATAA	2 cut(s)	1694, 2154
Psp124BI	GAGCTC	3 cut(s)	528, 822, 2951
Psp1406I	AACGTT	1 cut(s)	1914
Psp6I	CCWGG	5 cut(s)	357, 1020, 1363, 1773, 2600
PspCI	CACGTG	2 cut(s)	1140, 2621
PspGI	CCWGG	5 cut(s)	357, 1020, 1363, 1773, 2600
PspN4I	GGNNCC	6 cut(s)	263, 1224, 1441, 1647, 2532, 2616
PspPI	GGNCC	7 cut(s)	131, 262, 1440, 2390, 2579, 2615, 2963
PstNI	CAGNNNCTG	2 cut(s)	1592, 2440
PsuI	RGATCY	3 cut(s)	336, 2019, 2767
PvuII	CAGCTG	3 cut(s)	329, 869, 1862
RsaI	GTAC	3 cut(s)	345, 1224, 2364
RsaNI	GTAC	3 cut(s)	344, 1223, 2363
RseI	CAYNNNNRTG	1 cut(s)	2340
SacI	GAGCTC	3 cut(s)	528, 822, 2951
SacII	CCGCGG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	9 cut(s)	198, 222, 279, 1041, 1167, 1488, 1896, 2367, 2607
Sau3AI	GATC	6 cut(s)	336, 2019, 2250, 2500, 2767, 2908
Sau96I	GGNCC	7 cut(s)	131, 262, 1440, 2390, 2579, 2615, 2963
ScaI	AGTACT	1 cut(s)	2364
SchI	GAGTC	2 cut(s)	774, 1589
ScrFI	CCNGG	5 cut(s)	359, 1022, 1365, 1775, 2602
SduI	GDGCHC	6 cut(s)	528, 791, 822, 955, 1185, 2951
SfaNI	GCATC	8 cut(s)	839, 872, 1141, 1243, 1408, 1828, 1850, 2194
SfcI	CTRYAG	3 cut(s)	1203, 1209, 1344
Sfr303I	CCGCGG	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	3003
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	4 cut(s)	1440, 2390, 2579, 2615
SmiMI	CAYNNNNRTG	1 cut(s)	2340
SmlI	CTYRAG	1 cut(s)	1487
SmoI	CTYRAG	1 cut(s)	1487
SseBI	AGGCCT	1 cut(s)	1201
SsiI	CCGC	7 cut(s)	57, 181, 183, 903, 1220, 2057, 2401
SspI	AATATT	2 cut(s)	717, 1234
SspMI	CTAG	1 cut(s)	1032
SstI	GAGCTC	3 cut(s)	528, 822, 2951
StuI	AGGCCT	1 cut(s)	1201
StyD4I	CCNGG	5 cut(s)	357, 1020, 1363, 1773, 2600
StyI	CCWWGG	2 cut(s)	2582, 2798
TaiI	ACGT	3 cut(s)	1142, 1917, 2623
TaqI	TCGA	5 cut(s)	295, 316, 763, 2245, 3003
TaqII	GACCGA	1 cut(s)	1457
TatI	WGTACW	1 cut(s)	2362
TauI	GCSGC	3 cut(s)	59, 186, 905
TfiI	GAWTC	7 cut(s)	1412, 1547, 1763, 1993, 2173, 2495, 3005
Tru1I	TTAA	9 cut(s)	198, 222, 279, 1041, 1167, 1488, 1896, 2367, 2607
Tru9I	TTAA	9 cut(s)	198, 222, 279, 1041, 1167, 1488, 1896, 2367, 2607
TscAI	CASTG	5 cut(s)	67, 787, 1309, 1428, 2581
TseFI	GTSAC	4 cut(s)	154, 368, 1277, 1789
Tsp45I	GTSAC	4 cut(s)	154, 368, 1277, 1789
TspGWI	ACGGA	2 cut(s)	861, 2345
TspRI	CASTG	5 cut(s)	67, 787, 1309, 1428, 2581
Vha464I	CTTAAG	1 cut(s)	1487
VpaK11BI	GGWCC	4 cut(s)	1440, 2390, 2579, 2615
XagI	CCTNNNNNAGG	1 cut(s)	1362
XapI	RAATTY	5 cut(s)	200, 1093, 1133, 2414, 2775
XceI	RCATGY	3 cut(s)	684, 1189, 2345
XmiI	GTMKAC	1 cut(s)	1212
XspI	CTAG	1 cut(s)	1032
ZrmI	AGTACT	1 cut(s)	2364
Zsp2I	ATGCAT	1 cut(s)	1843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.