Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Reverse (-)

12284920 .. 12289295

Gene Structure 4376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G089600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACTGCAAAAGAACTAAAAAAACTTTGTATTGATGCTGTTACCTCACGAGCTACAAAACAAAAACCTGTGATCCAACAGATAAAGTTCTTGGAGGATGTGAAGAAAGGAAAGCTTGTTGCAAAGAATTTCTCTCGTGGAGCTGCTTTCGTTGAGTTTACAGAGCATCAGCATGCACTTGTGGCCCTGAGAGTTTTGAACAACAATCCTGAAACTTTTGGTCCTGAGCATCGCCCAATTGTGGAGTTTGCACTTGAGAATGTTAAAAAATTGAATATACGAAATGCTAAGATACAAGCACAGCAGCATGCAGCTTATCGTAATCGGGAAAACGTGGATCAAAATGAAGGCTCAAATAGACCAGATACTCATCCAAGCAAGAAGTCCAAAAACTCGAAACAAAAAGGGGAGAAGCGAAAATTGGATGATTCAGTACCAAATAAAGAAGAAGTTGAAAATAAGTTTAGTGATGGAGCTGCCACTGAAAGACACAGAGGTTCTAAGAGGCAGAAAAATGGTCCATTTGGAAAGGAAAAAAAGATCTCAGCAAAGGTATCAGAACACTCAACAACAGAGAAGGCGGAGGGCTCAAAACGTGAACCAAACAATCATCAAGATGGCAGGAAGGCTGGTGGTGGAAGATCATCTGAAGGTGAAACCGCAGCCATTGATGCACAAAAATCAAAACCTTTGAGAAAGACAAATGTGCTACCTAATAAGAGGAAGCTACAGGAGCAGAAAGAGGTAGAGGGGGGAGAGAATGTGACGAGGAGACAAAGACCAAAGAAGAACAAGGACCCATTAGGGCGGGATGTTACAGATAAACTTGACATGCTGATTGAACAATATAGATCCAAGTACTCGCAACGGAGCTCCGTTCAAACTGATGGCGAAAAGCAAGGTGCCAGAAAGCTTAGAAAATGGTTCCAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

312

Amino Acids

35.29

Weight (kDa)

10.07

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	902
AciI	CCGC	3 cut(s)	581, 660, 808
AclWI	GGATC	3 cut(s)	67, 345, 846
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	2 cut(s)	435, 860
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	5 cut(s)	199, 274, 455, 842, 881
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	8 cut(s)	53, 115, 143, 314, 476, 727, 873, 913
AluI	AGCT	8 cut(s)	53, 115, 143, 314, 476, 727, 873, 913
Alw21I	GWGCWC	1 cut(s)	875
Alw26I	GTCTC	1 cut(s)	766
AlwI	GGATC	3 cut(s)	67, 345, 846
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	5 cut(s)	143, 304, 311, 476, 662
ApoI	RAATTY	1 cut(s)	127
AspS9I	GGNCC	4 cut(s)	184, 221, 518, 796
AsuHPI	GGTGA	1 cut(s)	665
AvaII	GGWCC	3 cut(s)	221, 518, 796
BanI	GGYRCC	1 cut(s)	902
BanII	GRGCYC	2 cut(s)	590, 875
BauI	CACGAG	2 cut(s)	48, 135
Bbv12I	GWGCWC	1 cut(s)	875
BbvI	GCAGC	5 cut(s)	130, 316, 323, 463, 674
BccI	CCATC	3 cut(s)	464, 611, 881
BcoDI	GTCTC	1 cut(s)	766
BfmI	CTRYAG	1 cut(s)	728
BglII	AGATCT	1 cut(s)	540
BisI	GCNGC	5 cut(s)	144, 305, 312, 477, 663
BlsI	GCNGC	5 cut(s)	145, 306, 313, 478, 664
BmcAI	AGTACT	1 cut(s)	860
Bme18I	GGWCC	3 cut(s)	221, 518, 796
BmgT120I	GGNCC	4 cut(s)	184, 221, 518, 796
BmiI	GGNNCC	3 cut(s)	798, 904, 926
BmsI	GCATC	4 cut(s)	25, 175, 238, 661
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	369
BseGI	GGATG	4 cut(s)	103, 370, 430, 817
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	3 cut(s)	179, 216, 558
BseRI	GAGGAG	1 cut(s)	784
BseXI	GCAGC	5 cut(s)	130, 316, 323, 463, 674
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	902
BsiHKAI	GWGCWC	1 cut(s)	875
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	766
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	590, 875
Bsp143I	GATC	5 cut(s)	72, 337, 540, 641, 851
BspACI	CCGC	3 cut(s)	581, 660, 808
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	3 cut(s)	180, 217, 557
BspLI	GGNNCC	3 cut(s)	798, 904, 926
BspPI	GGATC	3 cut(s)	67, 345, 846
BspT107I	GGYRCC	1 cut(s)	902
BssMI	GATC	5 cut(s)	72, 337, 540, 641, 851
BssSI	CACGAG	2 cut(s)	48, 135
Bst2BI	CACGAG	2 cut(s)	48, 135
BstC8I	GCNNGC	2 cut(s)	174, 309
BstDEI	CTNAG	6 cut(s)	188, 225, 288, 501, 544, 914
BstF5I	GGATG	4 cut(s)	103, 370, 430, 817
BstKTI	GATC	5 cut(s)	75, 340, 543, 644, 854
BstMAI	GTCTC	1 cut(s)	766
BstMBI	GATC	5 cut(s)	72, 337, 540, 641, 851
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 671, 733
BstNSI	RCATGY	3 cut(s)	176, 311, 835
BstSFI	CTRYAG	1 cut(s)	728
BstV1I	GCAGC	5 cut(s)	130, 316, 323, 463, 674
BstX2I	RGATCY	2 cut(s)	540, 851
BstYI	RGATCY	2 cut(s)	540, 851
BsuRI	GGCC	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	4 cut(s)	103, 370, 430, 817
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	2 cut(s)	174, 309
Cfr13I	GGNCC	4 cut(s)	184, 221, 518, 796
Csp6I	GTAC	2 cut(s)	434, 859
CviAII	CATG	3 cut(s)	173, 308, 832
CviQI	GTAC	2 cut(s)	434, 859
DdeI	CTNAG	6 cut(s)	188, 225, 288, 501, 544, 914
DpnI	GATC	5 cut(s)	74, 339, 542, 643, 853
DpnII	GATC	5 cut(s)	72, 337, 540, 641, 851
EciI	GGCGGA	1 cut(s)	596
Ecl136II	GAGCTC	1 cut(s)	873
Eco24I	GRGCYC	2 cut(s)	590, 875
Eco47I	GGWCC	3 cut(s)	221, 518, 796
Eco53kI	GAGCTC	1 cut(s)	873
Eco57I	CTGAAG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	873
EcoO109I	RGGNCCY	1 cut(s)	796
EcoT38I	GRGCYC	2 cut(s)	590, 875
FaeI	CATG	3 cut(s)	176, 311, 835
FaiI	YATR	6 cut(s)	174, 278, 309, 833, 849, 934
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	3 cut(s)	172, 307, 831
FauI	CCCGC	1 cut(s)	801
Fnu4HI	GCNGC	5 cut(s)	144, 305, 312, 477, 663
FokI	GGATG	4 cut(s)	110, 357, 437, 824
FriOI	GRGCYC	2 cut(s)	590, 875
Fsp4HI	GCNGC	5 cut(s)	144, 305, 312, 477, 663
GluI	GCNGC	5 cut(s)	144, 305, 312, 477, 663
HaeIII	GGCC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	176, 311, 835
HindIII	AAGCTT	2 cut(s)	113, 911
HinfI	GANTC	1 cut(s)	428
HphI	GGTGA	1 cut(s)	665
Hpy166II	GTNNAC	2 cut(s)	159, 599
Hpy188I	TCNGA	2 cut(s)	559, 649
Hpy188III	TCNNGA	5 cut(s)	48, 209, 224, 326, 614
Hpy8I	GTNNAC	2 cut(s)	159, 599
HpyAV	CCTTC	4 cut(s)	341, 571, 619, 644
HpyCH4IV	ACGT	2 cut(s)	333, 595
HpyCH4V	TGCA	6 cut(s)	8, 122, 176, 251, 311, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 671, 733
HpyF3I	CTNAG	6 cut(s)	188, 225, 288, 501, 544, 914
HpySE526I	ACGT	2 cut(s)	333, 595
Hsp92II	CATG	3 cut(s)	176, 311, 835
Kzo9I	GATC	5 cut(s)	72, 337, 540, 641, 851
LmnI	GCTCC	5 cut(s)	140, 473, 733, 870, 878
LpnPI	CCDG	9 cut(s)	81, 200, 222, 237, 375, 607, 615, 716, 919
Lsp1109I	GCAGC	5 cut(s)	130, 316, 323, 463, 674
LweI	GCATC	4 cut(s)	25, 175, 238, 661
MaeII	ACGT	2 cut(s)	333, 595
MaeIII	GTNAC	3 cut(s)	40, 763, 814
MalI	GATC	5 cut(s)	74, 339, 542, 643, 853
MboI	GATC	5 cut(s)	72, 337, 540, 641, 851
MboII	GAAGA	4 cut(s)	115, 458, 651, 799
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	2 cut(s)	540, 851
MhlI	GDGCHC	2 cut(s)	590, 875
MluCI	AATT	4 cut(s)	127, 237, 269, 419
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	9 cut(s)	55, 88, 488, 498, 577, 714, 736, 742, 762
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	171, 615
MunI	CAATTG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	182, 671, 733
NdeII	GATC	5 cut(s)	72, 337, 540, 641, 851
NlaIII	CATG	3 cut(s)	176, 311, 835
NlaIV	GGNNCC	3 cut(s)	798, 904, 926
NmuCI	GTSAC	1 cut(s)	763
NspI	RCATGY	3 cut(s)	176, 311, 835
PaeI	GCATGC	2 cut(s)	176, 311
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	5 cut(s)	145, 306, 313, 478, 664
PpuMI	RGGWCCY	1 cut(s)	796
Psp124BI	GAGCTC	1 cut(s)	875
Psp5II	RGGWCCY	1 cut(s)	796
PspN4I	GGNNCC	3 cut(s)	798, 904, 926
PspPI	GGNCC	4 cut(s)	184, 221, 518, 796
PspPPI	RGGWCCY	1 cut(s)	796
PsuI	RGATCY	2 cut(s)	540, 851
RsaI	GTAC	2 cut(s)	435, 860
RsaNI	GTAC	2 cut(s)	434, 859
RseI	CAYNNNNRTG	2 cut(s)	171, 615
SacI	GAGCTC	1 cut(s)	875
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	5 cut(s)	144, 305, 312, 477, 663
Sau3AI	GATC	5 cut(s)	72, 337, 540, 641, 851
Sau96I	GGNCC	4 cut(s)	184, 221, 518, 796
ScaI	AGTACT	1 cut(s)	860
SduI	GDGCHC	2 cut(s)	590, 875
SfaNI	GCATC	4 cut(s)	25, 175, 238, 661
SfcI	CTRYAG	1 cut(s)	728
SinI	GGWCC	3 cut(s)	221, 518, 796
SmiMI	CAYNNNNRTG	2 cut(s)	171, 615
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SphI	GCATGC	2 cut(s)	176, 311
Sse9I	AATT	4 cut(s)	127, 237, 269, 419
SsiI	CCGC	3 cut(s)	581, 660, 808
SstI	GAGCTC	1 cut(s)	875
TaiI	ACGT	2 cut(s)	336, 598
TaqI	TCGA	1 cut(s)	395
TasI	AATT	4 cut(s)	127, 237, 269, 419
TatI	WGTACW	1 cut(s)	858
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	5 cut(s)	143, 304, 311, 476, 662
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	2 cut(s)	865, 883
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	3 cut(s)	221, 518, 796
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	3 cut(s)	176, 311, 835
ZrmI	AGTACT	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.