FvH4_7g06402

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003667
Physical Location & Seq
Forward (+)
6461386 .. 6463042
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06402.t1

Sequence Viewer

Length: 291 bp
ATGATGAGATTCGGAGCGAAAAGAAGAAAATACTCGCGACAGAGGAGGGTCTGGGTTGTTCACCGTGAAATTGTGAAGGTTCATAGGAGATCAGTCAGATCACGACAATCAGATCATGAAGGCACTGGAAGAAGAAATAAATGGTATAGAAGGTGCCATGGTAGAAGATCAGACATTTTGCATCTGTGTGCACTATCAGTGTATCAAAGAAGAGAATACAAGATTGAGGAGGTAACTGGAGCTTGCTGGATACTCGAGATGGTGGATGCAAGTATCAGCTCAATTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.64

Weight (kDa)

11.19

Isoelectric Point (pI)

96.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 153
AccII CGCG 1 cut(s) 37
AluBI AGCT 2 cut(s) 242, 279
AluI AGCT 2 cut(s) 242, 279
Alw21I GWGCWC 1 cut(s) 193
Alw44I GTGCAC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 254
ApaLI GTGCAC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 193
BccI CCATC 1 cut(s) 253
BciVI GTATCC 1 cut(s) 243
BfuI GTATCC 1 cut(s) 243
BmeT110I CYCGRG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 155
BmsI GCATC 2 cut(s) 190, 256
BpmI CTGGAG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 130, 241
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 130, 241
BseRI GAGGAG 2 cut(s) 58, 242
BseSI GKGCMC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 4 cut(s) 89, 98, 112, 167
Bsp19I CCATGG 1 cut(s) 157
Bsp68I TCGCGA 1 cut(s) 37
BspFNI CGCG 1 cut(s) 37
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 153
BsrI ACTGG 2 cut(s) 130, 241
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 4 cut(s) 89, 98, 112, 167
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 37
BstKTI GATC 4 cut(s) 92, 101, 115, 170
BstMBI GATC 4 cut(s) 89, 98, 112, 167
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 123, 204
BtuMI TCGCGA 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 244
CciI TCATGA 1 cut(s) 115
CviAII CATG 2 cut(s) 116, 158
CviJI RGCY 2 cut(s) 242, 279
CviKI_1 RGCY 2 cut(s) 242, 279
DdeI CTNAG 1 cut(s) 288
DpnI GATC 4 cut(s) 91, 100, 114, 169
DpnII GATC 4 cut(s) 89, 98, 112, 167
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 119, 161
FaiI YATR 4 cut(s) 84, 117, 147, 159
FatI CATG 2 cut(s) 115, 157
FokI GGATG 1 cut(s) 278
GsuI CTGGAG 1 cut(s) 258
Hin1II CATG 2 cut(s) 119, 161
HinfI GANTC 1 cut(s) 9
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 61, 191
Hpy188I TCNGA 4 cut(s) 14, 98, 112, 172
Hpy188III TCNNGA 4 cut(s) 36, 102, 116, 256
Hpy8I GTNNAC 2 cut(s) 61, 191
HpyAV CCTTC 3 cut(s) 70, 113, 144
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 181, 191, 269
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 2 cut(s) 119, 161
Kzo9I GATC 4 cut(s) 89, 98, 112, 167
LmnI GCTCC 2 cut(s) 14, 239
LpnPI CCDG 4 cut(s) 37, 111, 222, 232
LweI GCATC 2 cut(s) 190, 256
MaeIII GTNAC 1 cut(s) 232
MalI GATC 4 cut(s) 91, 100, 114, 169
MboI GATC 4 cut(s) 89, 98, 112, 167
MboII GAAGA 5 cut(s) 36, 141, 144, 177, 222
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 2 cut(s) 69, 282
MnlI CCTC 4 cut(s) 36, 39, 220, 223
MslI CAYNNNNRTG 1 cut(s) 186
MunI CAATTG 1 cut(s) 282
MvnI CGCG 1 cut(s) 37
NcoI CCATGG 1 cut(s) 157
NdeII GATC 4 cut(s) 89, 98, 112, 167
NlaIII CATG 2 cut(s) 119, 161
NlaIV GGNNCC 1 cut(s) 155
NruI TCGCGA 1 cut(s) 37
PaeR7I CTCGAG 1 cut(s) 254
PagI TCATGA 1 cut(s) 115
PfeI GAWTC 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 155
RruI TCGCGA 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 186
Sau3AI GATC 4 cut(s) 89, 98, 112, 167
SduI GDGCHC 1 cut(s) 193
SetI ASST 5 cut(s) 81, 155, 234, 244, 281
SfaNI GCATC 2 cut(s) 190, 256
Sfr274I CTCGAG 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 69, 282
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 69, 282
TfiI GAWTC 1 cut(s) 9
TscAI CASTG 2 cut(s) 130, 204
TspDTI ATGAA 2 cut(s) 71, 132
TspRI CASTG 2 cut(s) 130, 204
VneI GTGCAC 1 cut(s) 189
XhoI CTCGAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.