Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Reverse (-)

49765248 .. 49774349

Gene Structure 9102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3195 bp

ATGAGAACCCGAAGGGTTGTAAACCCCACCCTGAGAGGTTTTAGGTCCATTCCATTCGCCCGCCGAGCAGGAGCGGAAGCAGAAGCAGAAGCAGAGATGGGGAAGAAGAAAAGCAGAGATGGGAGCCATCCCAGAACCGAAACCGAGCACTGTACCTCCACCGTCTTCGTCTCCAATTTGCCCTACTCTTTCACCAATTCCCAGCTGGAGGAGACGTTCAGTGAAGTCGGACCGATCAGGCGGTGCTTTATGGTTACAAAAAAGGGGTCGACGGAGCACCGCGGTTTTGGCTTTGTTCAATTTGCTGTCACAACCGATGCTGATCGCTCCGTGGAGCTGAAGAATGGTGTGTCTGTTGGAGGTCGAAAGATTGCTGTTAAGCATGCCATGCACCGTGCACCTTTTGAACAACGAAGATCAAAGAAAGATCAAGGTTCCGAATTGGATGAAACTATGAATTCAAAAAATGGCAAGGATGGAGACAATCCTAAAGAGGGAAAGGGTGCTTCAAACTTGGATACAAGAGAGATCAAATTGGATAAGACCATGAAGTCAAAGAATGACAAGGATGCTGGCAATTTGAAAAAGGAAAAGGATGCTTCAAAGTTGGAGGAAAAAGAAAAAACTGTGAAACCCAGAAAACCAGTAGCACCATGTAAAGATGTAGTTGCAAAAGTGGGAGGTTCTGAAAAGCAGAGGGTTGCTAGGACTGTTATATTTGGTGGCCTTCTCAATGCTGGTATGGCGGAAGATGTTCATCGCCAAGCTAGGGAGGTTGGCGATGTGTGTTCTATAACTTATCCTTTTCCTAGAGAAGAGCTTCAACAACATGGTCTTGTACAAGATGGATGCAAAATGGATGCCTCAGCTGTACTTTACAACAGTGTTAAATCAGCTCATGCTTCTGTTGCAATGTTACACCAAAAGGAGATAAAAGGAGGAATTGTTTGGGCCCGTCAGCTGGGTGGGGAGGGTTCCAAGACTCGGAAGTGGAAGCTCATTGTCAGAAATCTTCCTTTCAAGGCCAAAGTCAGTGATATCAAAGATATGTTTTCATCTGCGGGATTTGTCTGGGAGGTTTATATACCACAGAATTCTGATACAGGGTTGTCTAAAGGTTTTGCATTCGTCAAATTCACACGCAGACAAGATGCAGAAAATGCAATACAAAAGTTCAACGGACAAAAACTTCTTAAAAGACCAATCGCTGTGGACTGGGCTGTTCCTAAGCAGATATATGGTAGTGGCAATGACGCCCTTGCTTCAGAAGATGGAGAAAAGGGCGGAAGAGATGGGGGAGATGATAGCAGCAGTGATGATTTTGAGGGTGATGCTGGAGATGCATGTAAAAAGTCCCAGCACCTTGATGGGATTGACAGTGCTTCAGATGACTCCAATACCACAGAGATGAAAGACATCCCTACTGAAATTGATTTTGAGGAGGAAGCAGACATAGCAAGAAAAGTTCTAAAAAACTTGACCACGCCCTCTGGTACAGTAACTGCTGTTGATAATTCTGCATTGCCCAAAGGTAACAAGGAGCCAACTATTGATTTTGAGGAGGAAGCAGACATTGCAAGAAAAGTTATAAAAAAGTTTACCACACCCTCTGGTACAGTAACTGCTGTTGATGATTCTGCACTGCCCATAAGCAACAAGGAGCCAACTATTGAAGAATCTGCTAATGAGACTAGTAAGTTAGCTTCCGAGACTGCGGTTAATAAATTATCTTCTGAAAGTGCCAGTGCATCAGATGTTGCTAAACCACAAACGGAAGAGGTAGATGATTTGCATAGAACAATTTTCATCAGCAACCTTCCTTTTGAGATCACTAATGAAGAAGTCAAACAAAGGTTTTCTGCTTTCGGGCAAGTGCAATCTTTTGTCCCAGTTCTTCATCCACTTACCAAGCGACCAAAAGGAACTGGCTTTCTCAAGTTTAAGACAATAGATGCTGTGAATTCTGCTGTTTCAGCTGGTAGTGCTGCATCTGGCTTGGGGATTTTTCTCAAGGGTAGACAACTGACAGTCTTCCAGGCTTTGGATAGAAAATCGGCTCACGAGAGGGAAGAAAATATGGCCAAAAAAGAGGACATAGACCACCGCAATCTCTATTTGGCAAAGGAAGGTCTTATTCTTGCGGGAACTCCAGCTGCAGAAGGGGTTTCAGCTAATGATATGTCAAAACGCCAAATGTTGGAGAGGAGCAAGGCGATGAAGCTTAAATCTCCAAATTTTCATGTTTCAAAGACAAGATTAGTTATGTACAATTTGCCAAAGTCCATGACTGAAAAACAGCTTAAGAAACTTTGTATGGATGCTGTTACCTCACGAGCTAAGCTACAAAAACCTGTGATTCGACAGATAAAGTGCTTGAAGGATGTGAAAAAGGGAAAGATTGTCGCAAAGAACCACTCTCGTGGTGTTGCTTTCATTGAGTTTACAGAGCACCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGTTCAGAACATCGGCCAATTGTGGAGTTTGCACTTGATAATGTTCAGAAATTGAGAGCACGTCAGGTATCACAACAAACTCAGCATGCCGCTAATGGTAATCAGAAAGAGGGGCGACAATTTGATCACTCAAATAGAGCAGATGCTCACCCAAGCAAGAAGTTCGAAAACCGGAGAGACAAAGGTGATAAGCGAAAAATGGATGAGGTAGTACCAAATAAAGAGGGTGAAGTGGAAAATAGGGTAAGTGATGGATTTGCCACTGAAGGGCAGAGATTTCCCAAGAGGCAGAAGAATGGTTCAGATAGAAAGGCAGAAAAGATTTCATCAAAAGAAGTACTGGGAGGCTCATCGGTGGAAGGTTCAAAACGTGGAAGGCATCATCAAGATGGCAGGAAGGCTGGCGGTGGAAGATCATTTGCAGGTGAAATCAAGGCAGTTGATGCGCCCTTATCAGTATCTTCCAGAAAGACGAATGTGGAACCTAAGAAGAGGAAGCTGCAGGAGCAAAAATGCATGGAGGGAGGAGAGAACATGATGAGAAGAAGGCCAAAGAATAAAGACCCAACAGGGCGGGATGTTACAGATAAACTTGACATGCTGATTGAAAAATATAGATCCACGTTCTCACATCAAAATTCCTTCCAAAAAGGTGGCGGAAGGCAAGATTCAATTAGAAAATGGATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

1064

Amino Acids

117.78

Weight (kDa)

9.49

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	55 - 124	3.1e-16	RNA recognition motif
RRM_1	PF00076	333 - 402	4.5e-16	RNA recognition motif
RRM_1	PF00076	601 - 658	1.2e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1589
AarI	CACCTGC	1 cut(s)	2915
AasI	GACNNNNNNGTC	1 cut(s)	550
Acc36I	ACCTGC	1 cut(s)	2915
AccB7I	CCANNNNNTGG	2 cut(s)	2041, 2197
AccBSI	CCGCTC	1 cut(s)	74
AccI	GTMKAC	2 cut(s)	269, 2017
AccII	CGCG	1 cut(s)	282
AclWI	GGATC	1 cut(s)	3114
AcoI	YGGCCR	2 cut(s)	2079, 2516
AcsI	RAATTY	6 cut(s)	457, 1093, 1133, 1960, 2233, 3139
AcuI	CTGAAG	4 cut(s)	359, 1248, 1368, 2787
AcyI	GRCGYC	1 cut(s)	1254
AfaI	GTAC	8 cut(s)	154, 840, 873, 1495, 1615, 2267, 2715, 2841
AfiI	CCNNNNNNNGG	8 cut(s)	208, 494, 769, 961, 984, 2041, 2197, 2769
AflII	CTTAAG	1 cut(s)	2300
AhlI	ACTAGT	1 cut(s)	1691
AjiI	CACGTC	1 cut(s)	2564
AjnI	CCWGG	1 cut(s)	2034
AleI	CACNNNNGTG	1 cut(s)	2418
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
Alw21I	GWGCWC	5 cut(s)	150, 279, 400, 2451, 2563
Alw26I	GTCTC	6 cut(s)	175, 206, 474, 1682, 1703, 2673
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	3114
AlwNI	CAGNNNCTG	2 cut(s)	1502, 1622
AoxI	GGCC	6 cut(s)	724, 951, 1023, 2079, 2516, 3050
ApaI	GGGCCC	1 cut(s)	955
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	4 cut(s)	1308, 1985, 2153, 3001
ApoI	RAATTY	6 cut(s)	457, 1093, 1133, 1960, 2233, 3139
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
Asp700I	GAANNNNTTC	2 cut(s)	753, 819
AspLEI	GCGC	1 cut(s)	2950
AspS9I	GGNCC	4 cut(s)	45, 230, 951, 952
AsuHPI	GGTGA	6 cut(s)	184, 1340, 2642, 2699, 2741, 2939
AsuII	TTCGAA	1 cut(s)	2667
AvaII	GGWCC	2 cut(s)	45, 230
BaeGI	GKGCMC	2 cut(s)	400, 955
BalI	TGGCCA	1 cut(s)	2081
BanII	GRGCYC	1 cut(s)	955
BarI	GAAGNNNNNNTAC	2 cut(s)	1687, 1719
BauI	CACGAG	3 cut(s)	2060, 2331, 2418
BbsI	GAAGAC	2 cut(s)	157, 2023
Bbv12I	GWGCWC	5 cut(s)	150, 279, 400, 2451, 2563
BbvCI	CCTCAGC	1 cut(s)	865
BbvI	GCAGC	4 cut(s)	1320, 1972, 2140, 2988
BcgI	CGANNNNNNTGC	2 cut(s)	2647, 2681
BciT130I	CCWGG	1 cut(s)	2036
BciVI	GTATCC	1 cut(s)	511
BclI	TGATCA	1 cut(s)	2626
BcoDI	GTCTC	6 cut(s)	175, 206, 474, 1682, 1703, 2673
BcuI	ACTAGT	1 cut(s)	1691
BfaI	CTAG	4 cut(s)	705, 768, 810, 1692
BfmI	CTRYAG	2 cut(s)	2154, 3002
BfrI	CTTAAG	1 cut(s)	2300
BfuAI	ACCTGC	1 cut(s)	2915
BfuI	GTATCC	1 cut(s)	511
BglI	GCCNNNNNGGC	1 cut(s)	2465
BisI	GCNGC	5 cut(s)	1309, 1986, 2154, 2592, 3002
BlpI	GCTNAGC	1 cut(s)	2337
BlsI	GCNGC	5 cut(s)	1310, 1987, 2155, 2593, 3003
BmcAI	AGTACT	1 cut(s)	2841
Bme1390I	CCNGG	1 cut(s)	2036
Bme18I	GGWCC	2 cut(s)	45, 230
BmgBI	CACGTC	1 cut(s)	2564
BmgT120I	GGNCC	4 cut(s)	45, 230, 951, 952
BmiI	GGNNCC	7 cut(s)	125, 436, 953, 976, 1542, 1662, 2985
BmrFI	CCNGG	1 cut(s)	2036
BmrI	ACTGGG	3 cut(s)	1225, 1883, 2852
BmuI	ACTGGG	3 cut(s)	1225, 1883, 2852
BpiI	GAAGAC	2 cut(s)	157, 2023
BpmI	CTGGAG	3 cut(s)	227, 1356, 2133
Bpu10I	CCTNAGC	2 cut(s)	865, 1227
Bpu1102I	GCTNAGC	1 cut(s)	2337
Bpu14I	TTCGAA	1 cut(s)	2667
BpuEI	CTTGAG	2 cut(s)	1919, 1994
BsaBI	GATNNNNATC	2 cut(s)	321, 756
BsaHI	GRCGYC	1 cut(s)	1254
BsaJI	CCNNGG	2 cut(s)	280, 330
BsaWI	WCCGGW	1 cut(s)	2673
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 200, 230, 930, 960
Bsc4I	CCNNNNNNNGG	8 cut(s)	208, 494, 769, 961, 984, 2041, 2197, 2769
Bse1I	ACTGG	6 cut(s)	644, 1220, 1743, 1889, 1930, 2847
Bse3DI	GCAATG	4 cut(s)	918, 1255, 1520, 1572
Bse8I	GATNNNNATC	2 cut(s)	321, 756
BseBI	CCWGG	1 cut(s)	2036
BseDI	CCNNGG	2 cut(s)	280, 330
BseJI	GATNNNNATC	2 cut(s)	321, 756
BseLI	CCNNNNNNNGG	8 cut(s)	208, 494, 769, 961, 984, 2041, 2197, 2769
BseMI	GCAATG	4 cut(s)	918, 1255, 1520, 1572
BseMII	CTCAG	4 cut(s)	23, 879, 2462, 2597
BseNI	ACTGG	6 cut(s)	644, 1220, 1743, 1889, 1930, 2847
BseRI	GAGGAG	5 cut(s)	224, 1454, 1574, 2218, 3042
BseSI	GKGCMC	2 cut(s)	400, 955
BseXI	GCAGC	4 cut(s)	1320, 1972, 2140, 2988
BseYI	CCCAGC	3 cut(s)	201, 961, 1356
BsgI	GTGCAG	1 cut(s)	1623
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	6 cut(s)	726, 953, 1025, 2081, 2518, 3052
BsiHKAI	GWGCWC	5 cut(s)	150, 279, 400, 2451, 2563
BsiSI	CCGG	1 cut(s)	2674
BslFI	GGGAC	2 cut(s)	1339, 1871
BslI	CCNNNNNNNGG	8 cut(s)	208, 494, 769, 961, 984, 2041, 2197, 2769
BsmAI	GTCTC	6 cut(s)	175, 206, 474, 1682, 1703, 2673
BsmBI	CGTCTC	2 cut(s)	175, 206
BsmFI	GGGAC	2 cut(s)	1339, 1871
BsmI	GAATGC	1 cut(s)	1124
BsnI	GGCC	6 cut(s)	726, 953, 1025, 2081, 2518, 3052
Bsp119I	TTCGAA	1 cut(s)	2667
Bsp120I	GGGCCC	1 cut(s)	951
Bsp1286I	GDGCHC	6 cut(s)	150, 279, 400, 955, 2451, 2563
Bsp1407I	TGTACA	2 cut(s)	838, 2265
Bsp143I	GATC	9 cut(s)	234, 322, 416, 427, 528, 1827, 2626, 2915, 3119
Bsp1720I	GCTNAGC	1 cut(s)	2337
BspANI	GGCC	6 cut(s)	726, 953, 1025, 2081, 2518, 3052
BspCNI	CTCAG	4 cut(s)	24, 878, 2463, 2596
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	7 cut(s)	125, 436, 953, 976, 1542, 1662, 2985
BspMAI	CTGCAG	2 cut(s)	2158, 3006
BspMI	ACCTGC	1 cut(s)	2915
BspPI	GGATC	1 cut(s)	3114
BspQI	GCTCTTC	1 cut(s)	810
BspT104I	TTCGAA	1 cut(s)	2667
BspTI	CTTAAG	1 cut(s)	2300
BsrBI	CCGCTC	1 cut(s)	74
BsrDI	GCAATG	4 cut(s)	918, 1255, 1520, 1572
BsrGI	TGTACA	2 cut(s)	838, 2265
BsrI	ACTGG	6 cut(s)	644, 1220, 1743, 1889, 1930, 2847
BssECI	CCNNGG	2 cut(s)	280, 330
BssMI	GATC	9 cut(s)	234, 322, 416, 427, 528, 1827, 2626, 2915, 3119
BssNI	GRCGYC	1 cut(s)	1254
BssSI	CACGAG	3 cut(s)	2060, 2331, 2418
Bst2BI	CACGAG	3 cut(s)	2060, 2331, 2418
Bst2UI	CCWGG	1 cut(s)	2036
Bst6I	CTCTTC	4 cut(s)	810, 1282, 1770, 2987
BstACI	GRCGYC	1 cut(s)	1254
BstAFI	CTTAAG	1 cut(s)	2300
BstAPI	GCANNNNNTGC	4 cut(s)	388, 1160, 1574, 2945
BstAUI	TGTACA	2 cut(s)	838, 2265
BstBI	TTCGAA	1 cut(s)	2667
BstC8I	GCNNGC	6 cut(s)	61, 384, 574, 2457, 2589, 2905
BstDEI	CTNAG	7 cut(s)	32, 865, 1227, 2337, 2471, 2583, 2988
BstDSI	CCRYGG	2 cut(s)	280, 330
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	2950
BstKTI	GATC	9 cut(s)	237, 325, 419, 430, 531, 1830, 2629, 2918, 3122
BstMAI	GTCTC	6 cut(s)	175, 206, 474, 1682, 1703, 2673
BstMBI	GATC	9 cut(s)	234, 322, 416, 427, 528, 1827, 2626, 2915, 3119
BstNI	CCWGG	1 cut(s)	2036
BstNSI	RCATGY	5 cut(s)	386, 1347, 2459, 2591, 3103
BstSCI	CCNGG	1 cut(s)	2034
BstSFI	CTRYAG	2 cut(s)	2154, 3002
BstSLI	GKGCMC	2 cut(s)	400, 955
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	4 cut(s)	1320, 1972, 2140, 2988
BstV2I	GAAGAC	2 cut(s)	157, 2023
BstX2I	RGATCY	1 cut(s)	3119
BstXI	CCANNNNNNTGG	2 cut(s)	2420, 3155
BstYI	RGATCY	1 cut(s)	3119
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	6 cut(s)	726, 953, 1025, 2081, 2518, 3052
BtgI	CCRYGG	2 cut(s)	280, 330
BtgZI	GCGATG	3 cut(s)	743, 795, 2228
BtrI	CACGTC	1 cut(s)	2564
BtsI	GCAGTG	2 cut(s)	1318, 1640
BtsIMutI	CAGTG	9 cut(s)	148, 226, 889, 1039, 1318, 1384, 1640, 1750, 2763
BveI	ACCTGC	1 cut(s)	2915
Cac8I	GCNNGC	6 cut(s)	61, 384, 574, 2457, 2589, 2905
CaiI	CAGNNNCTG	2 cut(s)	1502, 1622
CfoI	GCGC	1 cut(s)	2950
Cfr13I	GGNCC	4 cut(s)	45, 230, 951, 952
Cfr42I	CCGCGG	1 cut(s)	283
CpoI	CGGWCCG	1 cut(s)	230
CseI	GACGC	1 cut(s)	1262
Csp6I	GTAC	8 cut(s)	153, 839, 872, 1494, 1614, 2266, 2714, 2840
CspCI	CAANNNNNGTGG	2 cut(s)	1191, 1226
CspI	CGGWCCG	1 cut(s)	230
CviQI	GTAC	8 cut(s)	153, 839, 872, 1494, 1614, 2266, 2714, 2840
DdeI	CTNAG	7 cut(s)	32, 865, 1227, 2337, 2471, 2583, 2988
DpnI	GATC	9 cut(s)	236, 324, 418, 429, 530, 1829, 2628, 2917, 3121
DpnII	GATC	9 cut(s)	234, 322, 416, 427, 528, 1827, 2626, 2915, 3119
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	2 cut(s)	2079, 2516
Eam1104I	CTCTTC	4 cut(s)	810, 1282, 1770, 2987
EarI	CTCTTC	4 cut(s)	810, 1282, 1770, 2987
EciI	GGCGGA	3 cut(s)	761, 1299, 3174
Eco24I	GRGCYC	1 cut(s)	955
Eco32I	GATATC	1 cut(s)	1039
Eco47I	GGWCC	2 cut(s)	45, 230
Eco57I	CTGAAG	4 cut(s)	359, 1248, 1368, 2787
EcoRI	GAATTC	3 cut(s)	457, 1093, 1960
EcoRII	CCWGG	1 cut(s)	2034
EcoRV	GATATC	1 cut(s)	1039
EcoT22I	ATGCAT	2 cut(s)	1345, 3020
EcoT38I	GRGCYC	1 cut(s)	955
Esp3I	CGTCTC	2 cut(s)	175, 206
FaqI	GGGAC	2 cut(s)	1339, 1871
FauI	CCCGC	4 cut(s)	68, 1054, 2134, 3069
FbaI	TGATCA	1 cut(s)	2626
FblI	GTMKAC	2 cut(s)	269, 2017
Fnu4HI	GCNGC	5 cut(s)	1309, 1986, 2154, 2592, 3002
FriOI	GRGCYC	1 cut(s)	955
Fsp4HI	GCNGC	5 cut(s)	1309, 1986, 2154, 2592, 3002
FspBI	CTAG	4 cut(s)	705, 768, 810, 1692
GlaI	GCGC	1 cut(s)	2949
GluI	GCNGC	5 cut(s)	1309, 1986, 2154, 2592, 3002
GsaI	CCCAGC	3 cut(s)	205, 965, 1360
GsuI	CTGGAG	3 cut(s)	227, 1356, 2133
HaeIII	GGCC	6 cut(s)	726, 953, 1025, 2081, 2518, 3052
HapII	CCGG	1 cut(s)	2674
HgaI	GACGC	1 cut(s)	1262
HhaI	GCGC	1 cut(s)	2950
Hin1I	GRCGYC	1 cut(s)	1254
Hin6I	GCGC	1 cut(s)	2948
HinP1I	GCGC	1 cut(s)	2948
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	2219
HinfI	GANTC	6 cut(s)	982, 1391, 1634, 1676, 2356, 3170
HpaII	CCGG	1 cut(s)	2674
HphI	GGTGA	6 cut(s)	184, 1340, 2642, 2699, 2741, 2939
Hpy166II	GTNNAC	7 cut(s)	22, 270, 398, 1213, 1599, 2018, 2442
Hpy188III	TCNNGA	5 cut(s)	2060, 2331, 2492, 2888, 2967
Hpy8I	GTNNAC	7 cut(s)	22, 270, 398, 1213, 1599, 2018, 2442
Hpy99I	CGWCG	1 cut(s)	274
HpyCH4IV	ACGT	4 cut(s)	215, 2563, 2872, 3125
HpyF3I	CTNAG	7 cut(s)	32, 865, 1227, 2337, 2471, 2583, 2988
HpySE526I	ACGT	4 cut(s)	215, 2563, 2872, 3125
Hsp92I	GRCGYC	1 cut(s)	1254
HspAI	GCGC	1 cut(s)	2948
Ksp22I	TGATCA	1 cut(s)	2626
KspI	CCGCGG	1 cut(s)	283
Kzo9I	GATC	9 cut(s)	234, 322, 416, 427, 528, 1827, 2626, 2915, 3119
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	9 cut(s)	71, 123, 274, 332, 334, 1540, 1660, 2205, 3007
Lsp1109I	GCAGC	4 cut(s)	1320, 1972, 2140, 2988
MaeI	CTAG	4 cut(s)	705, 768, 810, 1692
MaeII	ACGT	4 cut(s)	215, 2563, 2872, 3125
MaeIII	GTNAC	8 cut(s)	253, 307, 915, 1498, 1532, 1618, 2323, 3082
MalI	GATC	9 cut(s)	236, 324, 418, 429, 530, 1829, 2628, 2917, 3121
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	9 cut(s)	234, 322, 416, 427, 528, 1827, 2626, 2915, 3119
MfeI	CAATTG	1 cut(s)	2520
MflI	RGATCY	1 cut(s)	3119
MhlI	GDGCHC	6 cut(s)	150, 279, 400, 955, 2451, 2563
MlsI	TGGCCA	1 cut(s)	2081
MluNI	TGGCCA	1 cut(s)	2081
MlyI	GAGTC	2 cut(s)	976, 1385
MmeI	TCCRAC	4 cut(s)	208, 337, 588, 2178
Mox20I	TGGCCA	1 cut(s)	2081
Mph1103I	ATGCAT	2 cut(s)	1345, 3020
MroXI	GAANNNNTTC	2 cut(s)	753, 819
MscI	TGGCCA	1 cut(s)	2081
MseI	TTAA	9 cut(s)	378, 888, 1194, 1719, 1941, 2223, 2301, 2481, 3193
MslI	CAYNNNNRTG	5 cut(s)	1365, 1406, 2418, 2454, 2889
Msp20I	TGGCCA	1 cut(s)	2081
MspA1I	CMGCKG	6 cut(s)	205, 282, 869, 961, 1976, 2153
MspCI	CTTAAG	1 cut(s)	2300
MspI	CCGG	1 cut(s)	2674
MspR9I	CCNGG	1 cut(s)	2036
MunI	CAATTG	1 cut(s)	2520
Mva1269I	GAATGC	1 cut(s)	1124
MvaI	CCWGG	1 cut(s)	2036
MvnI	CGCG	1 cut(s)	282
NdeII	GATC	9 cut(s)	234, 322, 416, 427, 528, 1827, 2626, 2915, 3119
NlaIV	GGNNCC	7 cut(s)	125, 436, 953, 976, 1542, 1662, 2985
NmeAIII	GCCGAG	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	307
NsiI	ATGCAT	2 cut(s)	1345, 3020
NspI	RCATGY	5 cut(s)	386, 1347, 2459, 2591, 3103
NspV	TTCGAA	1 cut(s)	2667
OliI	CACNNNNGTG	1 cut(s)	2418
PaeI	GCATGC	3 cut(s)	386, 2459, 2591
PaqCI	CACCTGC	1 cut(s)	2915
PciSI	GCTCTTC	1 cut(s)	810
PctI	GAATGC	1 cut(s)	1124
PdmI	GAANNNNTTC	2 cut(s)	753, 819
PfeI	GAWTC	4 cut(s)	1634, 1676, 2356, 3170
PflMI	CCANNNNNTGG	2 cut(s)	2041, 2197
PkrI	GCNGC	5 cut(s)	1310, 1987, 2155, 2593, 3003
PleI	GAGTC	2 cut(s)	976, 1385
PpsI	GAGTC	2 cut(s)	976, 1385
PsiI	TTATAA	1 cut(s)	1589
Psp6I	CCWGG	1 cut(s)	2034
PspFI	CCCAGC	3 cut(s)	201, 961, 1356
PspGI	CCWGG	1 cut(s)	2034
PspN4I	GGNNCC	7 cut(s)	125, 436, 953, 976, 1542, 1662, 2985
PspOMI	GGGCCC	1 cut(s)	951
PspPI	GGNCC	4 cut(s)	45, 230, 951, 952
PstI	CTGCAG	2 cut(s)	2158, 3006
PstNI	CAGNNNCTG	2 cut(s)	1502, 1622
PsuI	RGATCY	1 cut(s)	3119
PvuII	CAGCTG	5 cut(s)	205, 869, 961, 1976, 2153
RsaI	GTAC	8 cut(s)	154, 840, 873, 1495, 1615, 2267, 2715, 2841
RsaNI	GTAC	8 cut(s)	153, 839, 872, 1494, 1614, 2266, 2714, 2840
RseI	CAYNNNNRTG	5 cut(s)	1365, 1406, 2418, 2454, 2889
Rsr2I	CGGWCCG	1 cut(s)	230
RsrII	CGGWCCG	1 cut(s)	230
SacII	CCGCGG	1 cut(s)	283
SalI	GTCGAC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	9 cut(s)	378, 888, 1194, 1719, 1941, 2223, 2301, 2481, 3193
SatI	GCNGC	5 cut(s)	1309, 1986, 2154, 2592, 3002
Sau3AI	GATC	9 cut(s)	234, 322, 416, 427, 528, 1827, 2626, 2915, 3119
Sau96I	GGNCC	4 cut(s)	45, 230, 951, 952
ScaI	AGTACT	1 cut(s)	2841
SchI	GAGTC	2 cut(s)	976, 1385
ScrFI	CCNGG	1 cut(s)	2036
SduI	GDGCHC	6 cut(s)	150, 279, 400, 955, 2451, 2563
SfcI	CTRYAG	2 cut(s)	2154, 3002
Sfr303I	CCGCGG	1 cut(s)	283
SfuI	TTCGAA	1 cut(s)	2667
SgrBI	CCGCGG	1 cut(s)	283
SinI	GGWCC	2 cut(s)	45, 230
SmiMI	CAYNNNNRTG	5 cut(s)	1365, 1406, 2418, 2454, 2889
SmlI	CTYRAG	3 cut(s)	1934, 2009, 2300
SmoI	CTYRAG	3 cut(s)	1934, 2009, 2300
SpeI	ACTAGT	1 cut(s)	1691
SphI	GCATGC	3 cut(s)	386, 2459, 2591
SspMI	CTAG	4 cut(s)	705, 768, 810, 1692
StyD4I	CCNGG	1 cut(s)	2034
TaiI	ACGT	4 cut(s)	218, 2566, 2875, 3128
TaqI	TCGA	4 cut(s)	269, 364, 2359, 2667
TaqII	GACCGA	1 cut(s)	247
TatI	WGTACW	4 cut(s)	838, 871, 2265, 2839
TauI	GCSGC	1 cut(s)	2594
TfiI	GAWTC	4 cut(s)	1634, 1676, 2356, 3170
Tru1I	TTAA	9 cut(s)	378, 888, 1194, 1719, 1941, 2223, 2301, 2481, 3193
Tru9I	TTAA	9 cut(s)	378, 888, 1194, 1719, 1941, 2223, 2301, 2481, 3193
TscAI	CASTG	9 cut(s)	155, 226, 889, 1039, 1318, 1384, 1647, 1750, 2770
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	4 cut(s)	1308, 1985, 2153, 3001
Tsp45I	GTSAC	1 cut(s)	307
TspGWI	ACGGA	4 cut(s)	287, 319, 1194, 1787
TspRI	CASTG	9 cut(s)	155, 226, 889, 1039, 1318, 1384, 1647, 1750, 2770
Van91I	CCANNNNNTGG	2 cut(s)	2041, 2197
Vha464I	CTTAAG	1 cut(s)	2300
VneI	GTGCAC	1 cut(s)	396
VpaK11BI	GGWCC	2 cut(s)	45, 230
XapI	RAATTY	6 cut(s)	457, 1093, 1133, 1960, 2233, 3139
XceI	RCATGY	5 cut(s)	386, 1347, 2459, 2591, 3103
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 1364
XmiI	GTMKAC	2 cut(s)	269, 2017
XmnI	GAANNNNTTC	2 cut(s)	753, 819
XspI	CTAG	4 cut(s)	705, 768, 810, 1692
ZrmI	AGTACT	1 cut(s)	2841
Zsp2I	ATGCAT	2 cut(s)	1345, 3020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.