FvH4_7g06401

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003667
Physical Location & Seq
Forward (+)
6457615 .. 6460055
2441 bp
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UTR
Exon/CDS
Intron
FvH4_7g06401.t1

Sequence Viewer

Length: 621 bp
ATGTCGAGAAGTCCTTCAATTTCAATAGAGCCGGTTGCTAGAACCGTTATATTTGGTGGCGCTGGTATGGCGGAAGAAGTTCATCGCCAAGCTAGGGAGGTTGGCGATGTGTGTTCCATAACTTATCCCTTTCCCAAAGAAGAGGTTCAACAACATGGTCTTGTACAAGATGGATGCAAAATGGATGCCTCGGCTGTACTATACACCAGTGTCAAATCAGCTCATACTTCTGTTGCAATGTTACACCAGAAGGAGATAAAAGGAGGAATTGTTTGGGCACGTCAGCTGGGTGGGGAGGGTTCCAAGACTCGGAAGTGGAAGCTCATTGTCAGAAATCTTCCTTTCATGGCGAAGGTCAGTGATATTAAAGATATGTTTTCATCTGCGGGATTTGTTTGGGATGTTTATATACCACAGAATTCTGCTTTATTTTCATTCCTGTTGTCTAAAGGTTTTGCTTTCGTCAAATATACACGCAAACAAGATGCGGAAAATGCAATACAAAAGTTCAATGGACAAAAACTTCTTAAAAGACCAATAGCTGTCGACTGGGCTGTTCCAAAGCAGATATATGGTAGTGGCAATGACGCTCTTGCTTCAGAAGATGGTATTATACTGTAA

Protein Analysis

207

Amino Acids

22.71

Weight (kDa)

9.3

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 108 - 180 4.6e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 546
AciI CCGC 3 cut(s) 71, 386, 488
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 2 cut(s) 165, 198
AfiI CCNNNNNNNGG 2 cut(s) 94, 309
AgsI TTSAA 4 cut(s) 18, 24, 149, 511
AjiI CACGTC 1 cut(s) 281
AluBI AGCT 5 cut(s) 92, 221, 286, 322, 542
AluI AGCT 5 cut(s) 92, 221, 286, 322, 542
ApoI RAATTY 1 cut(s) 418
Asp700I GAANNNNTTC 3 cut(s) 13, 78, 144
AspLEI GCGC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 280
BccI CCATC 2 cut(s) 164, 599
BfaI CTAG 2 cut(s) 39, 93
BfoI RGCGCY 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 3 cut(s) 164, 175, 475
BmuI ACTGGG 1 cut(s) 559
BsaJI CCNNGG 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 309
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 207, 554
Bse3DI GCAATG 2 cut(s) 243, 589
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 3 cut(s) 179, 190, 406
BseLI CCNNNNNNNGG 2 cut(s) 94, 309
BseMI GCAATG 2 cut(s) 243, 589
BseNI ACTGG 2 cut(s) 207, 554
BseSI GKGCMC 1 cut(s) 280
BseYI CCCAGC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 94, 309
Bsp1286I GDGCHC 1 cut(s) 280
Bsp1407I TGTACA 1 cut(s) 163
BspACI CCGC 3 cut(s) 71, 386, 488
BspLI GGNNCC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 243, 589
BsrFI RCCGGY 1 cut(s) 31
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 2 cut(s) 207, 554
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 46, 618
Bst6I CTCTTC 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 163
BstF5I GGATG 3 cut(s) 179, 190, 406
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstMWI GCNNNNNNNGC 2 cut(s) 68, 494
BstSLI GKGCMC 1 cut(s) 280
BtgZI GCGATG 2 cut(s) 68, 120
BtrI CACGTC 1 cut(s) 281
BtsCI GGATG 3 cut(s) 179, 190, 406
BtsIMutI CAGTG 2 cut(s) 214, 364
CfoI GCGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 31
CseI GACGC 1 cut(s) 596
Csp6I GTAC 2 cut(s) 164, 197
CviAII CATG 2 cut(s) 155, 346
CviJI RGCY 8 cut(s) 31, 92, 194, 221, 286, 322, 542, 554
CviKI_1 RGCY 8 cut(s) 31, 92, 194, 221, 286, 322, 542, 554
CviQI GTAC 2 cut(s) 164, 197
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
EciI GGCGGA 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 582
EcoRI GAATTC 1 cut(s) 418
FaeI CATG 2 cut(s) 158, 349
FatI CATG 2 cut(s) 154, 345
FauI CCCGC 1 cut(s) 379
FblI GTMKAC 1 cut(s) 546
FokI GGATG 3 cut(s) 186, 197, 413
FspBI CTAG 2 cut(s) 39, 93
GlaI GCGC 1 cut(s) 61
GsaI CCCAGC 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 63
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 596
HhaI GCGC 1 cut(s) 62
Hin1II CATG 2 cut(s) 158, 349
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 1 cut(s) 307
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 3 cut(s) 312, 332, 601
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 547
HpyAV CCTTC 3 cut(s) 24, 244, 346
HpyCH4III ACNGT 2 cut(s) 46, 618
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 3 cut(s) 177, 236, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 494
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 2 cut(s) 158, 349
HspAI GCGC 1 cut(s) 60
LpnPI CCDG 7 cut(s) 45, 48, 220, 260, 272, 452, 535
LweI GCATC 3 cut(s) 164, 175, 475
MaeI CTAG 2 cut(s) 39, 93
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 240
MboII GAAGA 4 cut(s) 86, 152, 329, 614
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 3 cut(s) 18, 267, 418
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 5 cut(s) 91, 136, 199, 257, 289
MroXI GAANNNNTTC 3 cut(s) 13, 78, 144
MseI TTAA 2 cut(s) 366, 528
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 68, 494
NlaIII CATG 2 cut(s) 158, 349
NlaIV GGNNCC 1 cut(s) 301
NmeAIII GCCGAG 1 cut(s) 170
PdmI GAANNNNTTC 3 cut(s) 13, 78, 144
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 2 cut(s) 165, 198
RsaNI GTAC 2 cut(s) 164, 197
SalI GTCGAC 1 cut(s) 545
SaqAI TTAA 2 cut(s) 366, 528
SchI GAGTC 1 cut(s) 301
SduI GDGCHC 1 cut(s) 280
SfaNI GCATC 3 cut(s) 164, 175, 475
Sse9I AATT 3 cut(s) 18, 267, 418
SsiI CCGC 3 cut(s) 71, 386, 488
SspMI CTAG 2 cut(s) 39, 93
TaaI ACNGT 2 cut(s) 46, 618
TaiI ACGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 5, 546
TasI AATT 3 cut(s) 18, 267, 418
TatI WGTACW 2 cut(s) 163, 196
Tru1I TTAA 2 cut(s) 366, 528
Tru9I TTAA 2 cut(s) 366, 528
TscAI CASTG 2 cut(s) 214, 364
TspDTI ATGAA 4 cut(s) 71, 334, 369, 423
TspRI CASTG 2 cut(s) 214, 364
XapI RAATTY 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 546
XmnI GAANNNNTTC 3 cut(s) 13, 78, 144
XspI CTAG 2 cut(s) 39, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.