FvH4_7g06403

RNA-binding protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
6463952 .. 6469632
5681 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06403.t1

Sequence Viewer

Length: 1701 bp
ATGACTCTCCATGCATGCAATGAAAACACTGGTTTTACAGGAGAAAAGGGTGGAAGAGATGGGGGAAATGATAGCAGCAGCGATGATTTCGAGGGTGACGCTGGAGATACATATGAAACGCCCCAGCACCTTGATAGGATTGGCGCTGCTCCAGATGACTCCAATACAGCAGAGATGAAAGACATCCCTACTGAAATTGATTTTGAGGAGGAAGCAGATATATCAAGAAAAGTTCTAAAAAACTTGACCACTTCCTCTTGTACTGTAACATTGATGATATCTGAAATTGATTTTGAGGAGGAAGCAGATATATCAAGAAAAGTTCTAAAAAACTTGACCACTTCCTCTTGTACTGTAACTACTGATGATATGGGTGTTGATAATTCTGCATTTCCCAAAGGGAACAAGGAGCCAACTATTGATTTTGGGGAGGAAGCAGACATTGCTAGAAAAGTTCTAAAAAAGTTTACCACGGCCTCTGGTACAGTAACTGCTGTTGATGATTCATTGCCGAAAAGTAAAAAGGAGCCAACTATTGAAGAATCTGTTAATGAGCCTAGTAAATTACCTTCTGAGACTGCGCCTAATAACTTATCTTCTGAAAGTGCCAGTGCATCAGATGCTGCTAAACCACAAACAGAAGAAGAAGATGATTTGCATAGAACAATTTTCATCAGCAACCTTCCTTTTGAGATCACTTATGAAGAAGTCAAACAAAGGTTTTCTGCTTTTCGGCAAGTGCAATCTTTTGTCCCAGTTCTTCATCCACTTACCAAGCGACCAAAAGGAACAGGCTTTCTCAAGTTTAAGACTATAGATGCAGTGACCTCTGCGAAAATCGAGACGGAAGAAAATATGGCCAAAAAGGAGGACATAGACCACCGCAATCTCTATTTGGCAAAGGAAGGTCTTATTCTTGCGGGAACTCCAGCTGCAGAAGGGGTTTCAGCTACTGATATGTCAAAACGCCAAATGTTGGAGAGGAGCAAGGCCATGAAGCTTAAATCTCCAAACTTTCATGTTTCGAAGACGAGATTAGTTATGTACAATTTGCCAAAGTCCATGACTGAAAAACAGCTTAAAAAACTTTGTATTGATGCGGTTACCTCACGAGCTAAGCTACAAAAATCTGTGATTCGACAGATAAAGTGCTTGAAGGATGTGAAAAAGGGAAAGATTGTCACAAAGAACCACTCACGCGGTGTTGCTTTCATTGAGTTTACAGAACATCAGCATGCCCTTGTGGCTTTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGCTCAGAACACCGGCCAATAGTGGAGTTTGCACTTGATAATGTTCAGAAATTGAGAGCACGTCAGGTTTCACAACAAACACAGCAGCATGCCGCTAATGGTAATCAGAAAGAGGTTCATAGGAGATCACGAGGAACTGGAAGAAGAAATAAAGGGTATAGAAGGTGCCATGGTAGAAGATCAGACATTTTGCATCTCTGTGCACTGTCAGTGTGTCAAAGAAGAGAATACAAGATTGAGGAGGTAACTGGACCTCGCTGGATACTCGAGATGGTGGGTGATGAAGATTGCTATCATCGGTCATGCAGAGGAGTAATTGAAATGCCGACCGATGCAGTTGATCCAAAGAACCGGCACAAGAGAAAGCTTGAGACAGAGAGCTTGCTTGAATCAAGCAAAGTCATATCAGTCATGACATGA

Protein Analysis

567

Amino Acids

63.3

Weight (kDa)

6.98

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 223 - 280 1.3e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1446
AccB7I CCANNNNNTGG 1 cut(s) 976
AccII CGCG 1 cut(s) 1200
AciI CCGC 5 cut(s) 883, 920, 1100, 1200, 1374
AclWI GGATC 1 cut(s) 1616
AcoI YGGCCR 2 cut(s) 858, 1295
AdeI CACNNNGTG 1 cut(s) 1202
AfaI GTAC 4 cut(s) 262, 352, 484, 1046
AfiI CCNNNNNNNGG 1 cut(s) 976
AgsI TTSAA 4 cut(s) 539, 1156, 1601, 1670
AjiI CACGTC 1 cut(s) 1343
AluBI AGCT 8 cut(s) 932, 950, 1000, 1078, 1115, 1120, 1648, 1662
AluI AGCT 8 cut(s) 932, 950, 1000, 1078, 1115, 1120, 1648, 1662
Alw21I GWGCWC 2 cut(s) 1342, 1486
Alw26I GTCTC 3 cut(s) 569, 836, 1646
Alw44I GTGCAC 1 cut(s) 1482
AlwI GGATC 1 cut(s) 1616
AlwNI CAGNNNCTG 3 cut(s) 491, 623, 953
Ama87I CYCGRG 1 cut(s) 1547
AoxI GGCC 4 cut(s) 474, 858, 990, 1295
ApaLI GTGCAC 1 cut(s) 1482
ApeKI GCWGC 6 cut(s) 75, 78, 146, 623, 932, 1366
AspLEI GCGC 2 cut(s) 146, 583
AspS9I GGNCC 1 cut(s) 1532
AsuHPI GGTGA 2 cut(s) 107, 1571
AsuII TTCGAA 1 cut(s) 1025
AvaI CYCGRG 1 cut(s) 1547
AvaII GGWCC 1 cut(s) 1532
BaeGI GKGCMC 1 cut(s) 1486
BalI TGGCCA 1 cut(s) 860
BanI GGYRCC 1 cut(s) 1446
BarI GAAGNNNNNNTAC 2 cut(s) 553, 585
BauI CACGAG 2 cut(s) 1110, 1410
BbsI GAAGAC 1 cut(s) 1034
Bbv12I GWGCWC 2 cut(s) 1342, 1486
BbvI GCAGC 6 cut(s) 87, 90, 133, 610, 919, 1378
BccI CCATC 2 cut(s) 53, 1546
BceAI ACGGC 1 cut(s) 489
BciVI GTATCC 1 cut(s) 1536
BcoDI GTCTC 3 cut(s) 569, 836, 1646
BfaI CTAG 2 cut(s) 447, 558
BfmI CTRYAG 2 cut(s) 813, 933
BfoI RGCGCY 1 cut(s) 147
BfuI GTATCC 1 cut(s) 1536
BglI GCCNNNNNGGC 1 cut(s) 1244
BisI GCNGC 7 cut(s) 76, 79, 147, 624, 933, 1367, 1374
BlpI GCTNAGC 1 cut(s) 1116
BlsI GCNGC 7 cut(s) 77, 80, 148, 625, 934, 1368, 1375
Bme18I GGWCC 1 cut(s) 1532
BmeT110I CYCGRG 1 cut(s) 1547
BmgBI CACGTC 1 cut(s) 1343
BmgT120I GGNCC 1 cut(s) 1532
BmiI GGNNCC 3 cut(s) 411, 528, 1448
BmrI ACTGGG 1 cut(s) 749
BmsI GCATC 6 cut(s) 610, 623, 808, 1087, 1483, 1603
BmuI ACTGGG 1 cut(s) 749
BpiI GAAGAC 1 cut(s) 1034
BpmI CTGGAG 3 cut(s) 123, 135, 912
Bpu1102I GCTNAGC 1 cut(s) 1116
Bpu14I TTCGAA 1 cut(s) 1025
BpuEI CTTGAG 2 cut(s) 785, 1670
BsaBI GATNNNNATC 1 cut(s) 1572
BsaJI CCNNGG 2 cut(s) 471, 1450
Bsc4I CCNNNNNNNGG 1 cut(s) 976
Bse118I RCCGGY 2 cut(s) 1293, 1632
Bse1I ACTGG 5 cut(s) 34, 609, 755, 1423, 1534
Bse3DI GCAATG 3 cut(s) 25, 441, 506
Bse8I GATNNNNATC 1 cut(s) 1572
BseDI CCNNGG 2 cut(s) 471, 1450
BseGI GGATG 3 cut(s) 183, 763, 1165
BseJI GATNNNNATC 1 cut(s) 1572
BseLI CCNNNNNNNGG 1 cut(s) 976
BseMI GCAATG 3 cut(s) 25, 441, 506
BseMII CTCAG 2 cut(s) 564, 1299
BseNI ACTGG 5 cut(s) 34, 609, 755, 1423, 1534
BseRI GAGGAG 5 cut(s) 221, 311, 997, 1535, 1605
BseSI GKGCMC 1 cut(s) 1486
BseXI GCAGC 6 cut(s) 87, 90, 133, 610, 919, 1378
BseYI CCCAGC 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 1200
Bsh1285I CGRYCG 1 cut(s) 1611
BshFI GGCC 4 cut(s) 476, 860, 992, 1297
BshNI GGYRCC 1 cut(s) 1446
BsiEI CGRYCG 1 cut(s) 1611
BsiHKAI GWGCWC 2 cut(s) 1342, 1486
BsiHKCI CYCGRG 1 cut(s) 1547
BsiSI CCGG 2 cut(s) 1294, 1633
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 1 cut(s) 976
BsmAI GTCTC 3 cut(s) 569, 836, 1646
BsmBI CGTCTC 1 cut(s) 836
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 4 cut(s) 476, 860, 992, 1297
BsoBI CYCGRG 1 cut(s) 1547
Bsp119I TTCGAA 1 cut(s) 1025
Bsp1286I GDGCHC 2 cut(s) 1342, 1486
Bsp1407I TGTACA 1 cut(s) 1044
Bsp143I GATC 4 cut(s) 693, 1406, 1460, 1621
Bsp1720I GCTNAGC 1 cut(s) 1116
Bsp19I CCATGG 1 cut(s) 1450
BspACI CCGC 5 cut(s) 883, 920, 1100, 1200, 1374
BspANI GGCC 4 cut(s) 476, 860, 992, 1297
BspCNI CTCAG 2 cut(s) 565, 1298
BspFNI CGCG 1 cut(s) 1200
BspHI TCATGA 1 cut(s) 1692
BspLI GGNNCC 3 cut(s) 411, 528, 1448
BspMAI CTGCAG 1 cut(s) 937
BspPI GGATC 1 cut(s) 1616
BspT104I TTCGAA 1 cut(s) 1025
BspT107I GGYRCC 1 cut(s) 1446
BsrDI GCAATG 3 cut(s) 25, 441, 506
BsrFI RCCGGY 2 cut(s) 1293, 1632
BsrGI TGTACA 1 cut(s) 1044
BsrI ACTGG 5 cut(s) 34, 609, 755, 1423, 1534
BssAI RCCGGY 2 cut(s) 1293, 1632
BssECI CCNNGG 2 cut(s) 471, 1450
BssMI GATC 4 cut(s) 693, 1406, 1460, 1621
BssSI CACGAG 2 cut(s) 1110, 1410
BssT1I CCWWGG 1 cut(s) 1450
Bst2BI CACGAG 2 cut(s) 1110, 1410
Bst4CI ACNGT 4 cut(s) 265, 355, 487, 1488
Bst6I CTCTTC 2 cut(s) 49, 1498
BstAPI GCANNNNNTGC 2 cut(s) 443, 620
BstAUI TGTACA 1 cut(s) 1044
BstBI TTCGAA 1 cut(s) 1025
BstC8I GCNNGC 4 cut(s) 16, 1236, 1371, 1664
BstDEI CTNAG 3 cut(s) 573, 1116, 1285
BstDSI CCRYGG 2 cut(s) 471, 1450
BstEII GGTNACC 1 cut(s) 1102
BstF5I GGATG 3 cut(s) 183, 763, 1165
BstFNI CGCG 1 cut(s) 1200
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 146, 583
BstKTI GATC 4 cut(s) 696, 1409, 1463, 1624
BstMAI GTCTC 3 cut(s) 569, 836, 1646
BstMBI GATC 4 cut(s) 693, 1406, 1460, 1621
BstMCI CGRYCG 1 cut(s) 1611
BstMWI GCNNNNNNNGC 3 cut(s) 443, 620, 1244
BstNSI RCATGY 3 cut(s) 18, 1238, 1373
BstPI GGTNACC 1 cut(s) 1102
BstSFI CTRYAG 2 cut(s) 813, 933
BstSLI GKGCMC 1 cut(s) 1486
BstUI CGCG 1 cut(s) 1200
BstV1I GCAGC 6 cut(s) 87, 90, 133, 610, 919, 1378
BstV2I GAAGAC 1 cut(s) 1034
BsuI GTATCC 1 cut(s) 1536
BsuRI GGCC 4 cut(s) 476, 860, 992, 1297
BtgI CCRYGG 2 cut(s) 471, 1450
BtgZI GCGATG 1 cut(s) 96
BtrI CACGTC 1 cut(s) 1343
BtsCI GGATG 3 cut(s) 183, 763, 1165
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 5 cut(s) 27, 616, 828, 1484, 1497
Cac8I GCNNGC 4 cut(s) 16, 1236, 1371, 1664
CaiI CAGNNNCTG 3 cut(s) 491, 623, 953
CciI TCATGA 1 cut(s) 1692
CfoI GCGC 2 cut(s) 146, 583
Cfr10I RCCGGY 2 cut(s) 1293, 1632
Cfr13I GGNCC 1 cut(s) 1532
CseI GACGC 1 cut(s) 107
Csp6I GTAC 4 cut(s) 261, 351, 483, 1045
CviQI GTAC 4 cut(s) 261, 351, 483, 1045
DdeI CTNAG 3 cut(s) 573, 1116, 1285
DpnI GATC 4 cut(s) 695, 1408, 1462, 1623
DpnII GATC 4 cut(s) 693, 1406, 1460, 1621
DraIII CACNNNGTG 1 cut(s) 1202
EaeI YGGCCR 2 cut(s) 858, 1295
Eam1104I CTCTTC 2 cut(s) 49, 1498
EarI CTCTTC 2 cut(s) 49, 1498
Eco130I CCWWGG 1 cut(s) 1450
Eco32I GATATC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 1532
Eco88I CYCGRG 1 cut(s) 1547
Eco91I GGTNACC 1 cut(s) 1102
EcoO65I GGTNACC 1 cut(s) 1102
EcoRV GATATC 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 1450
EcoT22I ATGCAT 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 1450
Esp3I CGTCTC 1 cut(s) 836
FaqI GGGAC 1 cut(s) 737
FauI CCCGC 1 cut(s) 913
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 7 cut(s) 76, 79, 147, 624, 933, 1367, 1374
FokI GGATG 3 cut(s) 170, 750, 1172
Fsp4HI GCNGC 7 cut(s) 76, 79, 147, 624, 933, 1367, 1374
FspBI CTAG 2 cut(s) 447, 558
GlaI GCGC 2 cut(s) 145, 582
GluI GCNGC 7 cut(s) 76, 79, 147, 624, 933, 1367, 1374
GsaI CCCAGC 1 cut(s) 127
GsuI CTGGAG 3 cut(s) 123, 135, 912
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 4 cut(s) 476, 860, 992, 1297
HapII CCGG 2 cut(s) 1294, 1633
HgaI GACGC 1 cut(s) 107
HhaI GCGC 2 cut(s) 146, 583
Hin6I GCGC 2 cut(s) 144, 581
HinP1I GCGC 2 cut(s) 144, 581
HindIII AAGCTT 2 cut(s) 998, 1646
HinfI GANTC 6 cut(s) 4, 158, 503, 542, 1135, 1670
HpaII CCGG 2 cut(s) 1294, 1633
HphI GGTGA 2 cut(s) 107, 1571
Hpy166II GTNNAC 3 cut(s) 468, 1221, 1484
Hpy188I TCNGA 8 cut(s) 283, 574, 601, 619, 1288, 1329, 1389, 1465
Hpy188III TCNNGA 9 cut(s) 152, 225, 315, 841, 1110, 1271, 1410, 1549, 1693
Hpy8I GTNNAC 3 cut(s) 468, 1221, 1484
HpyAV CCTTC 6 cut(s) 579, 692, 899, 932, 1150, 1437
HpyCH4III ACNGT 4 cut(s) 265, 355, 487, 1488
HpyCH4IV ACGT 1 cut(s) 1342
HpyF10VI GCNNNNNNNGC 3 cut(s) 443, 620, 1244
HpyF3I CTNAG 3 cut(s) 573, 1116, 1285
HpySE526I ACGT 1 cut(s) 1342
HspAI GCGC 2 cut(s) 144, 581
Kzo9I GATC 4 cut(s) 693, 1406, 1460, 1621
LmnI GCTCC 4 cut(s) 154, 409, 526, 984
Lsp1109I GCAGC 6 cut(s) 87, 90, 133, 610, 919, 1378
LweI GCATC 6 cut(s) 610, 623, 808, 1087, 1483, 1603
MaeI CTAG 2 cut(s) 447, 558
MaeII ACGT 1 cut(s) 1342
MaeIII GTNAC 8 cut(s) 95, 265, 355, 487, 823, 1102, 1180, 1525
MalI GATC 4 cut(s) 695, 1408, 1462, 1623
MboI GATC 4 cut(s) 693, 1406, 1460, 1621
MhlI GDGCHC 2 cut(s) 1342, 1486
MlsI TGGCCA 1 cut(s) 860
MluCI AATT 8 cut(s) 195, 285, 382, 563, 666, 1048, 1331, 1596
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 957
Mox20I TGGCCA 1 cut(s) 860
Mph1103I ATGCAT 1 cut(s) 16
MscI TGGCCA 1 cut(s) 860
MseI TTAA 5 cut(s) 549, 807, 1002, 1080, 1260
MslI CAYNNNNRTG 2 cut(s) 1233, 1479
Msp20I TGGCCA 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 932
MspI CCGG 2 cut(s) 1294, 1633
MvnI CGCG 1 cut(s) 1200
MwoI GCNNNNNNNGC 3 cut(s) 443, 620, 1244
NcoI CCATGG 1 cut(s) 1450
NdeI CATATG 1 cut(s) 112
NdeII GATC 4 cut(s) 693, 1406, 1460, 1621
NlaIV GGNNCC 3 cut(s) 411, 528, 1448
NmuCI GTSAC 3 cut(s) 95, 823, 1180
NsiI ATGCAT 1 cut(s) 16
NspI RCATGY 3 cut(s) 18, 1238, 1373
NspV TTCGAA 1 cut(s) 1025
PaeI GCATGC 3 cut(s) 18, 1238, 1373
PaeR7I CTCGAG 1 cut(s) 1547
PagI TCATGA 1 cut(s) 1692
PfeI GAWTC 4 cut(s) 503, 542, 1135, 1670
PflMI CCANNNNNTGG 1 cut(s) 976
PkrI GCNGC 7 cut(s) 77, 80, 148, 625, 934, 1368, 1375
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PspEI GGTNACC 1 cut(s) 1102
PspFI CCCAGC 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 411, 528, 1448
PspPI GGNCC 1 cut(s) 1532
PstI CTGCAG 1 cut(s) 937
PstNI CAGNNNCTG 3 cut(s) 491, 623, 953
PvuII CAGCTG 1 cut(s) 932
RsaI GTAC 4 cut(s) 262, 352, 484, 1046
RsaNI GTAC 4 cut(s) 261, 351, 483, 1045
RseI CAYNNNNRTG 2 cut(s) 1233, 1479
SaqAI TTAA 5 cut(s) 549, 807, 1002, 1080, 1260
SatI GCNGC 7 cut(s) 76, 79, 147, 624, 933, 1367, 1374
Sau3AI GATC 4 cut(s) 693, 1406, 1460, 1621
Sau96I GGNCC 1 cut(s) 1532
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 2 cut(s) 1342, 1486
SfaNI GCATC 6 cut(s) 610, 623, 808, 1087, 1483, 1603
SfcI CTRYAG 2 cut(s) 813, 933
Sfr274I CTCGAG 1 cut(s) 1547
SfuI TTCGAA 1 cut(s) 1025
SinI GGWCC 1 cut(s) 1532
SlaI CTCGAG 1 cut(s) 1547
SmiMI CAYNNNNRTG 2 cut(s) 1233, 1479
SmlI CTYRAG 3 cut(s) 800, 1547, 1649
SmoI CTYRAG 3 cut(s) 800, 1547, 1649
SphI GCATGC 3 cut(s) 18, 1238, 1373
Sse9I AATT 8 cut(s) 195, 285, 382, 563, 666, 1048, 1331, 1596
SsiI CCGC 5 cut(s) 883, 920, 1100, 1200, 1374
SspMI CTAG 2 cut(s) 447, 558
StyI CCWWGG 1 cut(s) 1450
TaaI ACNGT 4 cut(s) 265, 355, 487, 1488
TaiI ACGT 1 cut(s) 1345
TaqI TCGA 5 cut(s) 90, 840, 1025, 1138, 1548
TaqII GACCGA 2 cut(s) 1569, 1625
TasI AATT 8 cut(s) 195, 285, 382, 563, 666, 1048, 1331, 1596
TatI WGTACW 3 cut(s) 260, 350, 1044
TauI GCSGC 1 cut(s) 1376
TfiI GAWTC 4 cut(s) 503, 542, 1135, 1670
Tru1I TTAA 5 cut(s) 549, 807, 1002, 1080, 1260
Tru9I TTAA 5 cut(s) 549, 807, 1002, 1080, 1260
TscAI CASTG 5 cut(s) 34, 616, 828, 1491, 1497
TseFI GTSAC 3 cut(s) 95, 823, 1180
TseI GCWGC 6 cut(s) 75, 78, 146, 623, 932, 1366
Tsp45I GTSAC 3 cut(s) 95, 823, 1180
TspGWI ACGGA 1 cut(s) 860
TspRI CASTG 5 cut(s) 34, 616, 828, 1491, 1497
Van91I CCANNNNNTGG 1 cut(s) 976
VneI GTGCAC 1 cut(s) 1482
VpaK11BI GGWCC 1 cut(s) 1532
XceI RCATGY 3 cut(s) 18, 1238, 1373
XhoI CTCGAG 1 cut(s) 1547
XspI CTAG 2 cut(s) 447, 558
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.