Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022087.1

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2657

Gene Structure 2657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022087.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1700 bp

taactgctgttgataattctgcattgcccaaaggtaacaaggagccaactattgattttgaggaggaagcagacattgcaagaaaagttctaaaaaagtttaccacaccctctggtacagtaactactgttgatgattctgcactgcccgtaaacaacaaggagccaactattgaagaatctgctaatgagactagtaagttatcttccgagactgcgcctaataaattatcttctgaaagtgccagtgcatcagatgttgctaaaccacaaacggaagaagtagatgatttgcatagaacaattttcatcagcaaccttccttttgagatcactaatgaagaagtcaaacaaaggttttctgctttcgggcaagtgcaatcttttgtcccagttcttcatccacttaccaagcgaccaaaaggaactggctttctcaagtttaagacaatagatgcagtgaattctgctgtttcagctgggagtgccgcatctggcttggggatttttctcaagggtagacaactgacagtcttccaggctttggatagaaaatcagctcacgagaaggaagaaaatatggccaaaaaagaggacatagaccaccgcaatctctatttggcaaaggaaggtcttattcttgcgggaactccagctgcagaaggggtttcagctaatgatatgtcaaaacgccaaatgttggagaggagcaaggcgatgaagcttaaatctccaaattttcatgtttcaaagacaagattagttatgtacaatttgccaaagtccatgactgaaaaacagcttaagaaactttgtatggatgctgttacctcacgagcgaagctacaaaaacctgtgattcgacagataaagtgcttgaaggatgtgaaaaagggaaagattgttgcaaagaaccactctcgcggtgttgctttcattgagtttacagagcaccagcatgcccttgtggctctgagagttcttaacaacaatcctgaaacttttggttcagaacatcggccaattgtggagtttgcacttgataatgttcagaaactgagagcacgtcaggtatcacaacaaactcagcagcatgccgctaatggtaatcagaaagaggggcggcaatttgatcactcaaatagagcagatgcccacccaagcaagaagtttgaaaaccggagagacaaaggtgacaagcgaaaactggatgaggtagtaccaaataaagagggtgaagtggaaaatagggcaagtgatggagctgccactgaagggcagagatttcccaagaggcagaagaatggttcagatagaaaggcagaaaagatttcatcaaaaaaagtactgggaggctcatcggtagaaggttcaaaacgtgaaagtcatcatcaagatggcaggaaggctggcggtggaagatcgtttgcaggtgaaatcaaggcagttgatgtgcccacatcaatatcttcgagaaagacaaatgtggaacctaagaagaggaagctgcaggagcaaaattacacggagggaggagaaaacatgatgagaagaaggccgaagaataaagacccaacagggcgggatgttacagataaacttgacatgctgattgaaaaatatagatccacattctcaaatcagaattccttccaaaaaggtggcggaaggcaagattcaattagaaaatggattgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

565

Amino Acids

62.88

Weight (kDa)

9.74

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1420
Acc36I	ACCTGC	1 cut(s)	1420
AccB7I	CCANNNNNTGG	2 cut(s)	543, 699
AccI	GTMKAC	1 cut(s)	519
AccII	CGCG	1 cut(s)	923
AciI	CCGC	9 cut(s)	488, 606, 643, 923, 1097, 1122, 1412, 1581, 1664
AclWI	GGATC	1 cut(s)	1619
AcoI	YGGCCR	2 cut(s)	581, 1018
AcsI	RAATTY	3 cut(s)	462, 735, 1644
AcuI	CTGAAG	1 cut(s)	1292
AfaI	GTAC	4 cut(s)	117, 769, 1220, 1346
AfiI	CCNNNNNNNGG	3 cut(s)	543, 699, 1274
AflII	CTTAAG	1 cut(s)	802
AgsI	TTSAA	7 cut(s)	175, 749, 879, 1174, 1373, 1615, 1679
AhlI	ACTAGT	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	1066
AjnI	CCWGG	1 cut(s)	536
AluBI	AGCT	9 cut(s)	478, 559, 655, 673, 723, 801, 843, 1264, 1506
AluI	AGCT	9 cut(s)	478, 559, 655, 673, 723, 801, 843, 1264, 1506
Alw21I	GWGCWC	2 cut(s)	953, 1065
Alw26I	GTCTC	3 cut(s)	184, 205, 1178
AlwI	GGATC	1 cut(s)	1619
AlwNI	CAGNNNCTG	1 cut(s)	1056
AoxI	GGCC	3 cut(s)	581, 1018, 1555
ApeKI	GCWGC	4 cut(s)	655, 1089, 1264, 1506
ApoI	RAATTY	3 cut(s)	462, 735, 1644
Asp700I	GAANNNNTTC	1 cut(s)	1648
AspLEI	GCGC	1 cut(s)	219
AsuHPI	GGTGA	3 cut(s)	1204, 1246, 1444
BaeGI	GKGCMC	1 cut(s)	1457
BalI	TGGCCA	1 cut(s)	583
BarI	GAAGNNNNNNTAC	2 cut(s)	189, 221
BauI	CACGAG	2 cut(s)	562, 833
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	953, 1065
BbvI	GCAGC	4 cut(s)	642, 1101, 1251, 1493
BccI	CCATC	2 cut(s)	1252, 1390
BciT130I	CCWGG	1 cut(s)	538
BclI	TGATCA	1 cut(s)	1131
BcoDI	GTCTC	3 cut(s)	184, 205, 1178
BcuI	ACTAGT	1 cut(s)	193
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	2 cut(s)	656, 1507
BfrI	CTTAAG	1 cut(s)	802
BfuAI	ACCTGC	1 cut(s)	1420
BglI	GCCNNNNNGGC	1 cut(s)	967
BisI	GCNGC	7 cut(s)	488, 656, 1090, 1097, 1123, 1265, 1507
BlsI	GCNGC	7 cut(s)	489, 657, 1091, 1098, 1124, 1266, 1508
BmcAI	AGTACT	1 cut(s)	1346
Bme1390I	CCNGG	1 cut(s)	538
BmgBI	CACGTC	1 cut(s)	1066
BmiI	GGNNCC	3 cut(s)	44, 164, 1490
BmrFI	CCNGG	1 cut(s)	538
BmrI	ACTGGG	2 cut(s)	385, 1357
BmsI	GCATC	5 cut(s)	259, 444, 499, 810, 1140
BmuI	ACTGGG	2 cut(s)	385, 1357
BpiI	GAAGAC	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	635
BpuEI	CTTGAG	2 cut(s)	421, 496
BsaWI	WCCGGW	1 cut(s)	1178
Bsc4I	CCNNNNNNNGG	3 cut(s)	543, 699, 1274
Bse1I	ACTGG	5 cut(s)	245, 391, 432, 1211, 1352
Bse3DI	GCAATG	2 cut(s)	22, 74
BseBI	CCWGG	1 cut(s)	538
BseGI	GGATG	5 cut(s)	399, 825, 888, 1215, 1590
BseLI	CCNNNNNNNGG	3 cut(s)	543, 699, 1274
BseMI	GCAATG	2 cut(s)	22, 74
BseMII	CTCAG	3 cut(s)	964, 1048, 1099
BseNI	ACTGG	5 cut(s)	245, 391, 432, 1211, 1352
BseRI	GAGGAG	3 cut(s)	76, 720, 1547
BseSI	GKGCMC	1 cut(s)	1457
BseXI	GCAGC	4 cut(s)	642, 1101, 1251, 1493
BseYI	CCCAGC	1 cut(s)	478
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	923
BshFI	GGCC	3 cut(s)	583, 1020, 1557
BsiHKAI	GWGCWC	2 cut(s)	953, 1065
BsiSI	CCGG	1 cut(s)	1179
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	3 cut(s)	543, 699, 1274
BsmAI	GTCTC	3 cut(s)	184, 205, 1178
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	3 cut(s)	583, 1020, 1557
Bsp1286I	GDGCHC	3 cut(s)	953, 1065, 1457
Bsp1407I	TGTACA	1 cut(s)	767
Bsp143I	GATC	4 cut(s)	329, 1131, 1420, 1624
BspACI	CCGC	9 cut(s)	488, 606, 643, 923, 1097, 1122, 1412, 1581, 1664
BspANI	GGCC	3 cut(s)	583, 1020, 1557
BspCNI	CTCAG	3 cut(s)	965, 1049, 1098
BspFNI	CGCG	1 cut(s)	923
BspLI	GGNNCC	3 cut(s)	44, 164, 1490
BspMAI	CTGCAG	2 cut(s)	660, 1511
BspMI	ACCTGC	1 cut(s)	1420
BspPI	GGATC	1 cut(s)	1619
BspTI	CTTAAG	1 cut(s)	802
BsrDI	GCAATG	2 cut(s)	22, 74
BsrGI	TGTACA	1 cut(s)	767
BsrI	ACTGG	5 cut(s)	245, 391, 432, 1211, 1352
BssMI	GATC	4 cut(s)	329, 1131, 1420, 1624
BssSI	CACGAG	2 cut(s)	562, 833
Bst2BI	CACGAG	2 cut(s)	562, 833
Bst2UI	CCWGG	1 cut(s)	538
Bst4CI	ACNGT	3 cut(s)	120, 129, 531
Bst6I	CTCTTC	1 cut(s)	1492
BstAFI	CTTAAG	1 cut(s)	802
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	959, 1094, 1410
BstDEI	CTNAG	4 cut(s)	973, 1057, 1085, 1493
BstF5I	GGATG	5 cut(s)	399, 825, 888, 1215, 1590
BstFNI	CGCG	1 cut(s)	923
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	4 cut(s)	332, 1134, 1423, 1627
BstMAI	GTCTC	3 cut(s)	184, 205, 1178
BstMBI	GATC	4 cut(s)	329, 1131, 1420, 1624
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 475, 484, 967, 1512
BstNI	CCWGG	1 cut(s)	538
BstNSI	RCATGY	3 cut(s)	961, 1096, 1608
BstSCI	CCNGG	1 cut(s)	536
BstSFI	CTRYAG	2 cut(s)	656, 1507
BstSLI	GKGCMC	1 cut(s)	1457
BstUI	CGCG	1 cut(s)	923
BstV1I	GCAGC	4 cut(s)	642, 1101, 1251, 1493
BstV2I	GAAGAC	1 cut(s)	525
BstX2I	RGATCY	1 cut(s)	1624
BstXI	CCANNNNNNTGG	1 cut(s)	1660
BstYI	RGATCY	1 cut(s)	1624
BsuRI	GGCC	3 cut(s)	583, 1020, 1557
BtgZI	GCGATG	1 cut(s)	730
BtrI	CACGTC	1 cut(s)	1066
BtsCI	GGATG	5 cut(s)	399, 825, 888, 1215, 1590
BtsI	GCAGTG	2 cut(s)	142, 464
BtsIMutI	CAGTG	4 cut(s)	142, 252, 464, 1268
BveI	ACCTGC	1 cut(s)	1420
Cac8I	GCNNGC	3 cut(s)	959, 1094, 1410
CaiI	CAGNNNCTG	1 cut(s)	1056
CfoI	GCGC	1 cut(s)	219
Csp6I	GTAC	4 cut(s)	116, 768, 1219, 1345
CviAII	CATG	6 cut(s)	742, 786, 958, 1093, 1542, 1605
CviQI	GTAC	4 cut(s)	116, 768, 1219, 1345
DdeI	CTNAG	4 cut(s)	973, 1057, 1085, 1493
DpnI	GATC	4 cut(s)	331, 1133, 1422, 1626
DpnII	GATC	4 cut(s)	329, 1131, 1420, 1624
EaeI	YGGCCR	2 cut(s)	581, 1018
Eam1104I	CTCTTC	1 cut(s)	1492
EarI	CTCTTC	1 cut(s)	1492
EciI	GGCGGA	1 cut(s)	1679
Eco57I	CTGAAG	1 cut(s)	1292
EcoRI	GAATTC	2 cut(s)	462, 1644
EcoRII	CCWGG	1 cut(s)	536
FaeI	CATG	6 cut(s)	745, 789, 961, 1096, 1545, 1608
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	6 cut(s)	741, 785, 957, 1092, 1541, 1604
FauI	CCCGC	2 cut(s)	636, 1574
FbaI	TGATCA	1 cut(s)	1131
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	7 cut(s)	488, 656, 1090, 1097, 1123, 1265, 1507
FokI	GGATG	5 cut(s)	386, 832, 895, 1222, 1597
Fsp4HI	GCNGC	7 cut(s)	488, 656, 1090, 1097, 1123, 1265, 1507
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	7 cut(s)	488, 656, 1090, 1097, 1123, 1265, 1507
GsaI	CCCAGC	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	3 cut(s)	583, 1020, 1557
HapII	CCGG	1 cut(s)	1179
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	6 cut(s)	745, 789, 961, 1096, 1545, 1608
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	721
HinfI	GANTC	4 cut(s)	136, 178, 858, 1675
HpaII	CCGG	1 cut(s)	1179
HphI	GGTGA	3 cut(s)	1204, 1246, 1444
Hpy166II	GTNNAC	4 cut(s)	101, 153, 520, 944
Hpy188I	TCNGA	9 cut(s)	210, 237, 255, 974, 1011, 1052, 1112, 1311, 1643
Hpy188III	TCNNGA	5 cut(s)	562, 833, 994, 1393, 1472
Hpy8I	GTNNAC	4 cut(s)	101, 153, 520, 944
HpyCH4III	ACNGT	3 cut(s)	120, 129, 531
HpyCH4IV	ACGT	2 cut(s)	1065, 1377
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 475, 484, 967, 1512
HpyF3I	CTNAG	4 cut(s)	973, 1057, 1085, 1493
HpySE526I	ACGT	2 cut(s)	1065, 1377
Hsp92II	CATG	6 cut(s)	745, 789, 961, 1096, 1545, 1608
HspAI	GCGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	1131
Kzo9I	GATC	4 cut(s)	329, 1131, 1420, 1624
LmnI	GCTCC	5 cut(s)	42, 162, 707, 1261, 1512
Lsp1109I	GCAGC	4 cut(s)	642, 1101, 1251, 1493
LweI	GCATC	5 cut(s)	259, 444, 499, 810, 1140
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	2 cut(s)	1065, 1377
MaeIII	GTNAC	5 cut(s)	34, 120, 825, 1192, 1587
MalI	GATC	4 cut(s)	331, 1133, 1422, 1626
MboI	GATC	4 cut(s)	329, 1131, 1420, 1624
MfeI	CAATTG	1 cut(s)	1022
MflI	RGATCY	1 cut(s)	1624
MhlI	GDGCHC	3 cut(s)	953, 1065, 1457
MlsI	TGGCCA	1 cut(s)	583
MluNI	TGGCCA	1 cut(s)	583
MmeI	TCCRAC	1 cut(s)	680
Mox20I	TGGCCA	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	1648
MscI	TGGCCA	1 cut(s)	583
MseI	TTAA	5 cut(s)	443, 725, 803, 983, 1698
MslI	CAYNNNNRTG	2 cut(s)	956, 1394
Msp20I	TGGCCA	1 cut(s)	583
MspA1I	CMGCKG	2 cut(s)	478, 655
MspCI	CTTAAG	1 cut(s)	802
MspI	CCGG	1 cut(s)	1179
MspR9I	CCNGG	1 cut(s)	538
MunI	CAATTG	1 cut(s)	1022
MvaI	CCWGG	1 cut(s)	538
MvnI	CGCG	1 cut(s)	923
MwoI	GCNNNNNNNGC	5 cut(s)	76, 475, 484, 967, 1512
NdeII	GATC	4 cut(s)	329, 1131, 1420, 1624
NlaIII	CATG	6 cut(s)	745, 789, 961, 1096, 1545, 1608
NlaIV	GGNNCC	3 cut(s)	44, 164, 1490
NmuCI	GTSAC	1 cut(s)	1192
NspI	RCATGY	3 cut(s)	961, 1096, 1608
PaeI	GCATGC	2 cut(s)	961, 1096
PaqCI	CACCTGC	1 cut(s)	1420
PdmI	GAANNNNTTC	1 cut(s)	1648
PfeI	GAWTC	4 cut(s)	136, 178, 858, 1675
PflMI	CCANNNNNTGG	2 cut(s)	543, 699
PkrI	GCNGC	7 cut(s)	489, 657, 1091, 1098, 1124, 1266, 1508
Psp6I	CCWGG	1 cut(s)	536
PspFI	CCCAGC	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	3 cut(s)	44, 164, 1490
PstI	CTGCAG	2 cut(s)	660, 1511
PstNI	CAGNNNCTG	1 cut(s)	1056
PsuI	RGATCY	1 cut(s)	1624
PvuII	CAGCTG	2 cut(s)	478, 655
RsaI	GTAC	4 cut(s)	117, 769, 1220, 1346
RsaNI	GTAC	4 cut(s)	116, 768, 1219, 1345
RseI	CAYNNNNRTG	2 cut(s)	956, 1394
SaqAI	TTAA	5 cut(s)	443, 725, 803, 983, 1698
SatI	GCNGC	7 cut(s)	488, 656, 1090, 1097, 1123, 1265, 1507
Sau3AI	GATC	4 cut(s)	329, 1131, 1420, 1624
ScaI	AGTACT	1 cut(s)	1346
ScrFI	CCNGG	1 cut(s)	538
SduI	GDGCHC	3 cut(s)	953, 1065, 1457
SfaNI	GCATC	5 cut(s)	259, 444, 499, 810, 1140
SfcI	CTRYAG	2 cut(s)	656, 1507
SmiMI	CAYNNNNRTG	2 cut(s)	956, 1394
SmlI	CTYRAG	3 cut(s)	436, 511, 802
SmoI	CTYRAG	3 cut(s)	436, 511, 802
SpeI	ACTAGT	1 cut(s)	193
SphI	GCATGC	2 cut(s)	961, 1096
SsiI	CCGC	9 cut(s)	488, 606, 643, 923, 1097, 1122, 1412, 1581, 1664
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	536
TaaI	ACNGT	3 cut(s)	120, 129, 531
TaiI	ACGT	2 cut(s)	1068, 1380
TaqI	TCGA	2 cut(s)	861, 1471
TatI	WGTACW	2 cut(s)	767, 1344
TauI	GCSGC	3 cut(s)	490, 1099, 1125
TfiI	GAWTC	4 cut(s)	136, 178, 858, 1675
Tru1I	TTAA	5 cut(s)	443, 725, 803, 983, 1698
Tru9I	TTAA	5 cut(s)	443, 725, 803, 983, 1698
TscAI	CASTG	4 cut(s)	149, 252, 464, 1275
TseFI	GTSAC	1 cut(s)	1192
TseI	GCWGC	4 cut(s)	655, 1089, 1264, 1506
Tsp45I	GTSAC	1 cut(s)	1192
TspDTI	ATGAA	7 cut(s)	297, 353, 388, 730, 733, 924, 1322
TspGWI	ACGGA	2 cut(s)	289, 1540
TspRI	CASTG	4 cut(s)	149, 252, 464, 1275
Van91I	CCANNNNNTGG	2 cut(s)	543, 699
Vha464I	CTTAAG	1 cut(s)	802
XapI	RAATTY	3 cut(s)	462, 735, 1644
XceI	RCATGY	3 cut(s)	961, 1096, 1608
XmiI	GTMKAC	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	1648
XspI	CTAG	1 cut(s)	194
ZrmI	AGTACT	1 cut(s)	1346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.