Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Reverse (-)

9337272 .. 9347718

Gene Structure 10447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1067900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3168 bp

ATGGGGAAGAAGAAAAGCAAAGATGGCGATGGCGGCCGACCGAGAACCGAAAGCGAGCACTCCCCCTCCACCATCTTCGTCTCCAATCTCCCCTTTTCTTTCACCAAATCTCAGCTGGAAGAGACGTTCAGCGACATTGGACCGATTAGGCGGTGCTTTTTGGTTATGAAGAAGGGGTCAACTGAGCACCGTGGTTTTGGTTTTGTTCAATTTGCTGTCATAGAAGATGCTAATCGTGCTGTTGAGCTAAAGAATGGTTTGTCCATTGGAGGTCGAAAAATTGCAGCTAAACATGCCATGCATCGTGCTCCACTTGAACAACGAAGGCCAAAGACTAATCAAGGAATTGACGTGGATGAGACCGTGAAAACAGAAAATGACAAGGATAGTGAAAATCCCCAAGGGGAAAAGGATGCTTCAAAATCTCAGGAAAGAGTTGTTACTTTGGAAAAAAATACAAAGAAACCCGTGAAGACTAGAAAAACAGCAGCACTGAGTAATGATCAAGTGGCAAAAGTGGGTGGTTCAGAAAAGCAGAGGGTTGCTAGAACTGTCATATTTGGTGGTCTTCTTAATGCTGGTATGGCAGAAGATGTTCATCGCAGAGCTAGGGAGATTGGGGACGTATGTTCCATCACTTATCCTCTTCCCAAAGAAGAGCTTGAACAACATGGTCTTGTGCAAGATGGATGCAAAATGGATGCTTCATCTGTACTTTATAACAGTGTCAGATCAGCTCATGCTTCTGTTTCTATGTTACACCAAAAAGAAATAAAAGGCGGCATTGTTTGGGCACGTCAGTTGGGTGGGGAGGGTTCCAAGACTCAGAAGTGGAAGCTCATTGTTAGAAATCTTCCTTTCAAGGCCAAAGAGAATGAAATAAAAGACATGTTTTCATCAGCAGGGTTTGTATGGGATGTTTTTATTCCCCATAATCCTAACACAGGGTTATCTAAAGGTTTTGCATTTGTCAAATTCACAGGCAAACAGGATGCGGAAAATGCAATAAAAAAGCTAAATGGACAAATGCTTCATAAAAGATCCATAGCTGTTGACTGGGCTGTTTCAAAGAAGATATATGGTAGTGGCAATAATGCCCTTGCTTCAGCAGATGGACAAGAGGATGAAAGAAATGGGGAAAGTGACAGTAGCAGTGATGATTTTGAGGATGATGCTGGGGATGTCGGTAAAAAATCCCACCACCATGATGGAGCAGACAATGCTCTAGATGACAACACCATAGAGAAAAAGGACGTCCCTACTGAAATTAATTTTGAAGAGGAAGCAGACATTGCAAGGAAAGTTCTAAAAAACTTCATCACACCCTCTGGTATAGCAACTCCTGATGATGATTCCACACTGCCCAAAAGGAATAAGGAGTCATCTATTGATATGTCTGTTGACAAGCCTAAGAAATTGTCTTCTGAGACTACAAAAGCATCAGAGATTGATAAGCCTGGAAAGAAAAGCAAAACCACGGCATCAAATCTTATCGATGAATCTGTTGATGAGCCTAATAGGCCGAAGAAAATGTCTTCTGAGATTACAAAAGCATCAGAGTTTGATAAGCCTGGAAATAAAAGCAAAACCACGGCATCAAATCTTATTGATGAATCTGTTGATGAGCCTAATAACTCATCTCTTGAGACTGCAAAAGCATCAGACGTTACTGAGCCTGGAAAGTTAAGTACAAGCACGGTACCAAATCTTGAACAGGCAGACGAAGTAGAAGATTTGCATAGAACAATTTTCATAAGCAATCTTCCTTTTGAGATCACTAATGAAGATGTCAAACAAAGGTTTTCTACCTTTGGGAAAGTTGACTCTTTTGTCCCAGTCCTTCATCCAGTCACCAAGCGACCCAAAGGATCTGGCTTTCTCAGGTTCAAAACAAAAGATGGAGCCAGTTCTGCCGTTTCAGCTGGGAATGCGGAATCTGGCTCGGGAATTACTCTGAAAGGTAGACAATTAACAGTGTTGCAGGCTTTGGATAAAAAGTCAGCTCATGATAAGGAATTAAATGTGGCCAAGAAAGAGGACCTAGACCACCGCAATCTCTATCTAGCAAAGGAAGGTCTTGTTCTTGAGGGAACTCCAGCTGCAAAAGGGGTTTCAGCTAGTGATATGTTGAAACGCCAAATGGCGGAGAGAAGCAAGATGTCGAAGCTTCAATCTCCAAATTTTCACGTTTCCCAGACGAGAATAGTTATAAAAAATTTGCCAAAGTCCATGAATGAAAAGGAACTAAAAAGACTTTGTATTGATGCAGTTACCTCACGAGCTACAAAACAAAAACCTGTTATTCGCCAGATAAAGTTCTTGGAGGATGTGAAGAAAGGAAAGCTAAACACAAAGAATCACTCTCGTGGAGCTGCTTTTGTTGAGTTTACAGAGCATCAGCATGCACTTGTGGCCCTCAGAGTTCTGAATAACAATCCTGGAACTTTTGGTCCTGATCATCGCCCAATTGTGGAGTTTGCACTGGATAATGTCCAGAAATTGAAATTACGAAATGCTAAGATTCAAGGGCAGCAGAATGCAGCTCGTCGTAATCCAGGTGTACAGCAAAAGGATGGCTCAAATAGACCAGATGCTGATCCAAGCAAGAAGTTCAACAAACGGAAACAAAGTGTTGACGAGCAAAGTCTGGATGAATCAGTACCAAATAAAGAAGATGAAGAGGAAAACAGGGTTGGTGATGGAACTGCCACTGACCAACTGAGAGCTCCTAAGAGGCAGAAACAGGGTCCGTTCGGAAAGGAAAAGAAGATCTCATCAACAAAAGTATCAGGAGGCTCAACAGAGAATTCGGAAAGCTCAAAACATGAACCAAACAATCATCAAGATGGCGCAAAGCCTGGTGGTCGTGGGAGATCATTCGGACGTGAATCCATGGCCATTGATGCACAAAAATCAAAATCCGTGGGAAAGGCAAATGTACAACCTCAAAAGAGGAAGCTGCAAGCGCAGAAAGAAGTAGAGGGCGGAGAGAATGAAACGAGGAGAAAAAGGCCAAAGAAAAATAAAGACCCATTAGGGCGGGACGTTGTGGATAAACTCGACCTGCTGATCGAACAATATAGATCCAAGCACTCACAACGGAGCTCCGCCCAAACGGATGGCGAAAAGCAAGGTTCCAAGAAGCTTAGAAAATGGTTCCAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

1056

Amino Acids

116.43

Weight (kDa)

9.44

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	25 - 94	8e-18	RNA recognition motif
RRM_1	PF00076	280 - 349	7.3e-18	RNA recognition motif
RRM_1	PF00076	583 - 643	9.2e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	720, 2210
AasI	GACNNNNNNGTC	1 cut(s)	1829
AatII	GACGTC	1 cut(s)	1257
Acc36I	ACCTGC	1 cut(s)	3072
Acc65I	GGTACC	1 cut(s)	1699
AccB1I	GGYRCC	1 cut(s)	1699
AccI	GTMKAC	1 cut(s)	1963
AclWI	GGATC	4 cut(s)	1035, 1876, 2591, 3078
AcoI	YGGCCR	3 cut(s)	34, 2025, 2895
AcsI	RAATTY	4 cut(s)	974, 2179, 2215, 2806
AcuI	CTGAAG	1 cut(s)	1089
AcyI	GRCGYC	1 cut(s)	1254
AfaI	GTAC	6 cut(s)	714, 1690, 1701, 2562, 2661, 2940
AfiI	CCNNNNNNNGG	3 cut(s)	944, 2143, 2470
AflIII	ACRYGT	1 cut(s)	888
AjiI	CACGTC	3 cut(s)	352, 797, 2885
AjnI	CCWGG	6 cut(s)	1456, 1570, 1675, 2437, 2554, 2857
AjuI	GAANNNNNNNTTGG	2 cut(s)	2676, 2708
AleI	CACNNNNGTG	1 cut(s)	2364
AloI	GAACNNNNNNTCC	4 cut(s)	110, 142, 2434, 2466
Alw21I	GWGCWC	5 cut(s)	60, 189, 310, 2728, 3107
Alw26I	GTCTC	5 cut(s)	85, 116, 353, 1421, 1640
AlwI	GGATC	4 cut(s)	1035, 1876, 2591, 3078
AlwNI	CAGNNNCTG	1 cut(s)	2594
Ama87I	CYCGRG	1 cut(s)	1942
AoxI	GGCC	8 cut(s)	34, 326, 864, 1520, 2025, 2412, 2895, 3011
ApeKI	GCWGC	7 cut(s)	284, 488, 2099, 2372, 2530, 2540, 2959
ApoI	RAATTY	4 cut(s)	974, 2179, 2215, 2806
ArsI	GACNNNNNNTTYG	2 cut(s)	1517, 1549
AseI	ATTAAT	1 cut(s)	1269
Asp700I	GAANNNNTTC	1 cut(s)	594
Asp718I	GGTACC	1 cut(s)	1699
AspLEI	GCGC	2 cut(s)	2852, 2968
AspS9I	GGNCC	5 cut(s)	140, 2038, 2413, 2450, 2747
AsuHPI	GGTGA	3 cut(s)	94, 1843, 2708
AvaI	CYCGRG	1 cut(s)	1942
AvaII	GGWCC	4 cut(s)	140, 2038, 2450, 2747
BaeGI	GKGCMC	1 cut(s)	796
BaeI	ACNNNNGTAYC	2 cut(s)	2769, 2802
BalI	TGGCCA	2 cut(s)	2027, 2897
BanI	GGYRCC	1 cut(s)	1699
BanII	GRGCYC	2 cut(s)	2728, 3107
BauI	CACGAG	2 cut(s)	2277, 2364
BbsI	GAAGAC	4 cut(s)	479, 560, 1413, 1527
Bbv12I	GWGCWC	5 cut(s)	60, 189, 310, 2728, 3107
BbvI	GCAGC	7 cut(s)	296, 500, 2086, 2359, 2542, 2552, 2946
BceAI	ACGGC	3 cut(s)	1494, 1608, 1898
BciT130I	CCWGG	6 cut(s)	1458, 1572, 1677, 2439, 2556, 2859
BclI	TGATCA	2 cut(s)	502, 2455
BcoDI	GTCTC	5 cut(s)	85, 116, 353, 1421, 1640
BfaI	CTAG	7 cut(s)	477, 546, 609, 1226, 2042, 2063, 2118
BfuAI	ACCTGC	1 cut(s)	3072
BglI	GCCNNNNNGGC	1 cut(s)	1519
BglII	AGATCT	1 cut(s)	2769
BisI	GCNGC	9 cut(s)	34, 285, 489, 781, 2100, 2373, 2531, 2541, 2960
BlsI	GCNGC	9 cut(s)	35, 286, 490, 782, 2101, 2374, 2532, 2542, 2961
Bme1390I	CCNGG	6 cut(s)	1458, 1572, 1677, 2439, 2556, 2859
Bme18I	GGWCC	4 cut(s)	140, 2038, 2450, 2747
BmeT110I	CYCGRG	1 cut(s)	1942
BmgBI	CACGTC	3 cut(s)	352, 797, 2885
BmgT120I	GGNCC	5 cut(s)	140, 2038, 2413, 2450, 2747
BmiI	GGNNCC	6 cut(s)	817, 1701, 1903, 2748, 3136, 3158
BmrFI	CCNGG	6 cut(s)	1458, 1572, 1677, 2439, 2556, 2859
BmrI	ACTGGG	2 cut(s)	1066, 1829
BmuI	ACTGGG	2 cut(s)	1066, 1829
BpiI	GAAGAC	4 cut(s)	479, 560, 1413, 1527
BpmI	CTGGAG	1 cut(s)	2079
BpuEI	CTTGAG	2 cut(s)	1664, 2105
Bsa29I	ATCGAT	1 cut(s)	1494
BsaBI	GATNNNNATC	3 cut(s)	231, 597, 2595
BsaHI	GRCGYC	1 cut(s)	1254
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	6 cut(s)	190, 400, 1476, 1590, 2892, 2922
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	944, 2143, 2470
Bse1I	ACTGG	5 cut(s)	1061, 1835, 1847, 1905, 2487
Bse3DI	GCAATG	1 cut(s)	1290
Bse8I	GATNNNNATC	3 cut(s)	231, 597, 2595
BseBI	CCWGG	6 cut(s)	1458, 1572, 1677, 2439, 2556, 2859
BseCI	ATCGAT	1 cut(s)	1494
BseDI	CCNNGG	6 cut(s)	190, 400, 1476, 1590, 2892, 2922
BseJI	GATNNNNATC	3 cut(s)	231, 597, 2595
BseLI	CCNNNNNNNGG	3 cut(s)	944, 2143, 2470
BseMI	GCAATG	1 cut(s)	1290
BseNI	ACTGG	5 cut(s)	1061, 1835, 1847, 1905, 2487
BseRI	GAGGAG	1 cut(s)	3016
BseSI	GKGCMC	1 cut(s)	796
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	7 cut(s)	296, 500, 2086, 2359, 2542, 2552, 2946
BseYI	CCCAGC	2 cut(s)	1175, 1922
Bsh1285I	CGRYCG	2 cut(s)	37, 41
BshFI	GGCC	8 cut(s)	36, 328, 866, 1522, 2027, 2414, 2897, 3013
BshNI	GGYRCC	1 cut(s)	1699
BshVI	ATCGAT	1 cut(s)	1494
BsiEI	CGRYCG	2 cut(s)	37, 41
BsiHKAI	GWGCWC	5 cut(s)	60, 189, 310, 2728, 3107
BsiHKCI	CYCGRG	1 cut(s)	1942
BslFI	GGGAC	4 cut(s)	635, 1241, 1817, 3056
BslI	CCNNNNNNNGG	3 cut(s)	944, 2143, 2470
BsmAI	GTCTC	5 cut(s)	85, 116, 353, 1421, 1640
BsmBI	CGTCTC	2 cut(s)	85, 116
BsmFI	GGGAC	4 cut(s)	635, 1241, 1817, 3056
BsmI	GAATGC	2 cut(s)	1933, 2542
BsnI	GGCC	8 cut(s)	36, 328, 866, 1522, 2027, 2414, 2897, 3013
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	1942
Bsp1286I	GDGCHC	6 cut(s)	60, 189, 310, 796, 2728, 3107
Bsp1407I	TGTACA	2 cut(s)	2560, 2938
Bsp19I	CCATGG	1 cut(s)	2892
BspANI	GGCC	8 cut(s)	36, 328, 866, 1522, 2027, 2414, 2897, 3013
BspDI	ATCGAT	1 cut(s)	1494
BspHI	TCATGA	1 cut(s)	2005
BspLI	GGNNCC	6 cut(s)	817, 1701, 1903, 2748, 3136, 3158
BspMI	ACCTGC	1 cut(s)	3072
BspPI	GGATC	4 cut(s)	1035, 1876, 2591, 3078
BspQI	GCTCTTC	1 cut(s)	651
BspT107I	GGYRCC	1 cut(s)	1699
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	1290
BsrGI	TGTACA	2 cut(s)	2560, 2938
BsrI	ACTGG	5 cut(s)	1061, 1835, 1847, 1905, 2487
BssECI	CCNNGG	6 cut(s)	190, 400, 1476, 1590, 2892, 2922
BssNI	GRCGYC	1 cut(s)	1254
BssSI	CACGAG	2 cut(s)	2277, 2364
BssT1I	CCWWGG	2 cut(s)	400, 2892
Bst2BI	CACGAG	2 cut(s)	2277, 2364
Bst2UI	CCWGG	6 cut(s)	1458, 1572, 1677, 2439, 2556, 2859
Bst4CI	ACNGT	7 cut(s)	191, 364, 553, 725, 1148, 1699, 1975
Bst6I	CTCTTC	5 cut(s)	114, 651, 651, 1272, 2673
BstACI	GRCGYC	1 cut(s)	1254
BstAPI	GCANNNNNTGC	2 cut(s)	1220, 1292
BstAUI	TGTACA	2 cut(s)	2560, 2938
BstC8I	GCNNGC	4 cut(s)	56, 1983, 2403, 2964
BstDSI	CCRYGG	5 cut(s)	190, 1476, 1590, 2892, 2922
BstENI	CCTNNNNNAGG	1 cut(s)	942
BstHHI	GCGC	2 cut(s)	2852, 2968
BstMAI	GTCTC	5 cut(s)	85, 116, 353, 1421, 1640
BstMCI	CGRYCG	2 cut(s)	37, 41
BstNI	CCWGG	6 cut(s)	1458, 1572, 1677, 2439, 2556, 2859
BstNSI	RCATGY	3 cut(s)	296, 892, 2405
BstSCI	CCNGG	6 cut(s)	1456, 1570, 1675, 2437, 2554, 2857
BstSLI	GKGCMC	1 cut(s)	796
BstV1I	GCAGC	7 cut(s)	296, 500, 2086, 2359, 2542, 2552, 2946
BstV2I	GAAGAC	4 cut(s)	479, 560, 1413, 1527
BstX2I	RGATCY	4 cut(s)	1040, 1868, 2769, 3083
BstXI	CCANNNNNNTGG	2 cut(s)	1208, 3119
BstYI	RGATCY	4 cut(s)	1040, 1868, 2769, 3083
BstZI	CGGCCG	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	1494
BsuRI	GGCC	8 cut(s)	36, 328, 866, 1522, 2027, 2414, 2897, 3013
BsuTUI	ATCGAT	1 cut(s)	1494
BtgI	CCRYGG	5 cut(s)	190, 1476, 1590, 2892, 2922
BtgZI	GCGATG	3 cut(s)	42, 584, 2444
BtrI	CACGTC	3 cut(s)	352, 797, 2885
BtsI	GCAGTG	2 cut(s)	1159, 1358
BtsIMutI	CAGTG	7 cut(s)	491, 730, 1159, 1358, 1980, 2480, 2709
BveI	ACCTGC	1 cut(s)	3072
Cac8I	GCNNGC	4 cut(s)	56, 1983, 2403, 2964
CaiI	CAGNNNCTG	1 cut(s)	2594
CciI	TCATGA	1 cut(s)	2005
CfoI	GCGC	2 cut(s)	2852, 2968
Cfr13I	GGNCC	5 cut(s)	140, 2038, 2413, 2450, 2747
ClaI	ATCGAT	1 cut(s)	1494
Csp6I	GTAC	6 cut(s)	713, 1689, 1700, 2561, 2660, 2939
CspCI	CAANNNNNGTGG	2 cut(s)	2904, 2939
CviQI	GTAC	6 cut(s)	713, 1689, 1700, 2561, 2660, 2939
DrdI	GACNNNNNNGTC	1 cut(s)	1829
DseDI	GACNNNNNNGTC	1 cut(s)	1829
EaeI	YGGCCR	3 cut(s)	34, 2025, 2895
EagI	CGGCCG	1 cut(s)	34
Eam1104I	CTCTTC	5 cut(s)	114, 651, 651, 1272, 2673
EarI	CTCTTC	5 cut(s)	114, 651, 651, 1272, 2673
EciI	GGCGGA	3 cut(s)	2159, 3000, 3097
Ecl136II	GAGCTC	2 cut(s)	2726, 3105
EclXI	CGGCCG	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	400, 2892
Eco24I	GRGCYC	2 cut(s)	2728, 3107
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	4 cut(s)	140, 2038, 2450, 2747
Eco52I	CGGCCG	1 cut(s)	34
Eco53kI	GAGCTC	2 cut(s)	2726, 3105
Eco57I	CTGAAG	1 cut(s)	1089
Eco88I	CYCGRG	1 cut(s)	1942
EcoICRI	GAGCTC	2 cut(s)	2726, 3105
EcoNI	CCTNNNNNAGG	1 cut(s)	942
EcoO109I	RGGNCCY	1 cut(s)	2038
EcoRI	GAATTC	1 cut(s)	2806
EcoRII	CCWGG	6 cut(s)	1456, 1570, 1675, 2437, 2554, 2857
EcoT14I	CCWWGG	2 cut(s)	400, 2892
EcoT22I	ATGCAT	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	2728, 3107
ErhI	CCWWGG	2 cut(s)	400, 2892
Esp3I	CGTCTC	2 cut(s)	85, 116
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	4 cut(s)	635, 1241, 1817, 3056
FauI	CCCGC	1 cut(s)	3033
FbaI	TGATCA	2 cut(s)	502, 2455
FblI	GTMKAC	1 cut(s)	1963
Fnu4HI	GCNGC	9 cut(s)	34, 285, 489, 781, 2100, 2373, 2531, 2541, 2960
FriOI	GRGCYC	2 cut(s)	2728, 3107
Fsp4HI	GCNGC	9 cut(s)	34, 285, 489, 781, 2100, 2373, 2531, 2541, 2960
FspBI	CTAG	7 cut(s)	477, 546, 609, 1226, 2042, 2063, 2118
GlaI	GCGC	2 cut(s)	2851, 2967
GluI	GCNGC	9 cut(s)	34, 285, 489, 781, 2100, 2373, 2531, 2541, 2960
GsaI	CCCAGC	2 cut(s)	1179, 1926
GsuI	CTGGAG	1 cut(s)	2079
HaeIII	GGCC	8 cut(s)	36, 328, 866, 1522, 2027, 2414, 2897, 3013
HhaI	GCGC	2 cut(s)	2852, 2968
Hin1I	GRCGYC	1 cut(s)	1254
Hin6I	GCGC	2 cut(s)	2850, 2966
HinP1I	GCGC	2 cut(s)	2850, 2966
HincII	GTYRAC	5 cut(s)	180, 1054, 1402, 1822, 2635
HindII	GTYRAC	5 cut(s)	180, 1054, 1402, 1822, 2635
HindIII	AAGCTT	2 cut(s)	2165, 3143
HphI	GGTGA	3 cut(s)	94, 1843, 2708
Hpy166II	GTNNAC	8 cut(s)	180, 1054, 1402, 1822, 1964, 2388, 2561, 2635
Hpy8I	GTNNAC	8 cut(s)	180, 1054, 1402, 1822, 1964, 2388, 2561, 2635
Hpy99I	CGWCG	1 cut(s)	2550
HpyAV	CCTTC	4 cut(s)	166, 318, 1850, 2066
HpyCH4III	ACNGT	7 cut(s)	191, 364, 553, 725, 1148, 1699, 1975
HpyCH4IV	ACGT	9 cut(s)	125, 351, 624, 796, 1254, 1665, 2187, 2884, 3045
HpySE526I	ACGT	9 cut(s)	125, 351, 624, 796, 1254, 1665, 2187, 2884, 3045
Hsp92I	GRCGYC	1 cut(s)	1254
HspAI	GCGC	2 cut(s)	2850, 2966
KpnI	GGTACC	1 cut(s)	1703
Ksp22I	TGATCA	2 cut(s)	502, 2455
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	7 cut(s)	313, 1211, 1901, 2369, 2731, 3102, 3110
Lsp1109I	GCAGC	7 cut(s)	296, 500, 2086, 2359, 2542, 2552, 2946
MaeI	CTAG	7 cut(s)	477, 546, 609, 1226, 2042, 2063, 2118
MaeII	ACGT	9 cut(s)	125, 351, 624, 796, 1254, 1665, 2187, 2884, 3045
MaeIII	GTNAC	6 cut(s)	439, 756, 1142, 1666, 1849, 2269
MfeI	CAATTG	1 cut(s)	2466
MflI	RGATCY	4 cut(s)	1040, 1868, 2769, 3083
MhlI	GDGCHC	6 cut(s)	60, 189, 310, 796, 2728, 3107
MlsI	TGGCCA	2 cut(s)	2027, 2897
MluNI	TGGCCA	2 cut(s)	2027, 2897
MlyI	GAGTC	3 cut(s)	817, 1388, 1817
Mox20I	TGGCCA	2 cut(s)	2027, 2897
Mph1103I	ATGCAT	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	594
MscI	TGGCCA	2 cut(s)	2027, 2897
MseI	TTAA	5 cut(s)	573, 1269, 1685, 1970, 2018
MslI	CAYNNNNRTG	5 cut(s)	1203, 1206, 2364, 2400, 2844
Msp20I	TGGCCA	2 cut(s)	2027, 2897
MspA1I	CMGCKG	3 cut(s)	115, 1922, 2099
MspR9I	CCNGG	6 cut(s)	1458, 1572, 1677, 2439, 2556, 2859
MunI	CAATTG	1 cut(s)	2466
Mva1269I	GAATGC	2 cut(s)	1933, 2542
MvaI	CCWGG	6 cut(s)	1458, 1572, 1677, 2439, 2556, 2859
NcoI	CCATGG	1 cut(s)	2892
NlaIV	GGNNCC	6 cut(s)	817, 1701, 1903, 2748, 3136, 3158
NmuCI	GTSAC	2 cut(s)	1142, 1849
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	3 cut(s)	296, 892, 2405
OliI	CACNNNNGTG	1 cut(s)	2364
PaeI	GCATGC	1 cut(s)	2405
PagI	TCATGA	1 cut(s)	2005
PciI	ACATGT	1 cut(s)	888
PciSI	GCTCTTC	1 cut(s)	651
PctI	GAATGC	2 cut(s)	1933, 2542
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	8 cut(s)	1352, 1499, 1613, 1934, 2356, 2521, 2654, 2888
PfoI	TCCNGGA	1 cut(s)	2437
PkrI	GCNGC	9 cut(s)	35, 286, 490, 782, 2101, 2374, 2532, 2542, 2961
PleI	GAGTC	3 cut(s)	817, 1387, 1817
PpsI	GAGTC	3 cut(s)	817, 1387, 1817
PpuMI	RGGWCCY	1 cut(s)	2038
PscI	ACATGT	1 cut(s)	888
PshBI	ATTAAT	1 cut(s)	1269
PsiI	TTATAA	2 cut(s)	720, 2210
Psp124BI	GAGCTC	2 cut(s)	2728, 3107
Psp5II	RGGWCCY	1 cut(s)	2038
Psp6I	CCWGG	6 cut(s)	1456, 1570, 1675, 2437, 2554, 2857
PspFI	CCCAGC	2 cut(s)	1175, 1922
PspGI	CCWGG	6 cut(s)	1456, 1570, 1675, 2437, 2554, 2857
PspN4I	GGNNCC	6 cut(s)	817, 1701, 1903, 2748, 3136, 3158
PspPI	GGNCC	5 cut(s)	140, 2038, 2413, 2450, 2747
PspPPI	RGGWCCY	1 cut(s)	2038
PstNI	CAGNNNCTG	1 cut(s)	2594
PsuI	RGATCY	4 cut(s)	1040, 1868, 2769, 3083
PvuII	CAGCTG	3 cut(s)	115, 1922, 2099
RsaI	GTAC	6 cut(s)	714, 1690, 1701, 2562, 2661, 2940
RsaNI	GTAC	6 cut(s)	713, 1689, 1700, 2561, 2660, 2939
RseI	CAYNNNNRTG	5 cut(s)	1203, 1206, 2364, 2400, 2844
SacI	GAGCTC	2 cut(s)	2728, 3107
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	5 cut(s)	573, 1269, 1685, 1970, 2018
SatI	GCNGC	9 cut(s)	34, 285, 489, 781, 2100, 2373, 2531, 2541, 2960
Sau96I	GGNCC	5 cut(s)	140, 2038, 2413, 2450, 2747
SchI	GAGTC	3 cut(s)	817, 1388, 1817
ScrFI	CCNGG	6 cut(s)	1458, 1572, 1677, 2439, 2556, 2859
SduI	GDGCHC	6 cut(s)	60, 189, 310, 796, 2728, 3107
SinI	GGWCC	4 cut(s)	140, 2038, 2450, 2747
SmiMI	CAYNNNNRTG	5 cut(s)	1203, 1206, 2364, 2400, 2844
SmlI	CTYRAG	2 cut(s)	1643, 2084
SmoI	CTYRAG	2 cut(s)	1643, 2084
SphI	GCATGC	1 cut(s)	2405
SspMI	CTAG	7 cut(s)	477, 546, 609, 1226, 2042, 2063, 2118
SstI	GAGCTC	2 cut(s)	2728, 3107
StyD4I	CCNGG	6 cut(s)	1456, 1570, 1675, 2437, 2554, 2857
StyI	CCWWGG	2 cut(s)	400, 2892
TaaI	ACNGT	7 cut(s)	191, 364, 553, 725, 1148, 1699, 1975
TaiI	ACGT	9 cut(s)	128, 354, 627, 799, 1257, 1668, 2190, 2887, 3048
TaqI	TCGA	5 cut(s)	274, 1494, 2162, 3060, 3072
TaqII	GACCGA	2 cut(s)	55, 157
TatI	WGTACW	4 cut(s)	712, 1688, 2560, 2938
TauI	GCSGC	2 cut(s)	36, 783
TfiI	GAWTC	8 cut(s)	1352, 1499, 1613, 1934, 2356, 2521, 2654, 2888
Tru1I	TTAA	5 cut(s)	573, 1269, 1685, 1970, 2018
Tru9I	TTAA	5 cut(s)	573, 1269, 1685, 1970, 2018
TscAI	CASTG	7 cut(s)	498, 730, 1159, 1365, 1980, 2487, 2716
TseFI	GTSAC	2 cut(s)	1142, 1849
TseI	GCWGC	7 cut(s)	284, 488, 2099, 2372, 2530, 2540, 2959
Tsp45I	GTSAC	2 cut(s)	1142, 1849
TspGWI	ACGGA	5 cut(s)	2635, 2739, 2911, 3115, 3131
TspRI	CASTG	7 cut(s)	498, 730, 1159, 1365, 1980, 2487, 2716
VpaK11BI	GGWCC	4 cut(s)	140, 2038, 2450, 2747
VspI	ATTAAT	1 cut(s)	1269
XagI	CCTNNNNNAGG	1 cut(s)	942
XapI	RAATTY	4 cut(s)	974, 2179, 2215, 2806
XbaI	TCTAGA	1 cut(s)	1225
XceI	RCATGY	3 cut(s)	296, 892, 2405
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 1205
XmiI	GTMKAC	1 cut(s)	1963
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	7 cut(s)	477, 546, 609, 1226, 2042, 2063, 2118
ZraI	GACGTC	1 cut(s)	1255
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.