RNA-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21440 |
| fragaria_vesca | FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 |
| malus_domestica | MD05G1059700.v1.1 MD10G1067900.v1.1 |
| prunus_persica | Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1 |
| pyrus_communis | pycom05g05100 pycom10g05370 |
| rosa_chinensis | RchiOBHm_Chr6g0266121 |
| rosa_laevigata | RLG00000014114 |
| rosa_multiflora | Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001 |
| rosa_roxburghii | Rroxscaffold_174G00435210 Rroxscaffold_7G00201960 |
| rosa_rugosa | Rorug06G0024200 |
| rosa_samantha | Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700 |
| rosa_wichuraiana | Rw6G012500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2990 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 28, 613 |
| Acc36I | ACCTGC | 1 cut(s) | 2990 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2113, 2269 |
| AccI | GTMKAC | 2 cut(s) | 332, 2089 |
| AclWI | GGATC | 3 cut(s) | 12, 2839, 3189 |
| AcoI | YGGCCR | 2 cut(s) | 2151, 2588 |
| AcsI | RAATTY | 6 cut(s) | 520, 1156, 1196, 2032, 2305, 3214 |
| AcuI | CTGAAG | 4 cut(s) | 422, 1311, 1440, 2862 |
| AfaI | GTAC | 8 cut(s) | 217, 903, 936, 1567, 1687, 2339, 2790, 2916 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 271, 557, 832, 1024, 1047, 2113, 2269, 2844 |
| AflII | CTTAAG | 1 cut(s) | 2372 |
| AhlI | ACTAGT | 1 cut(s) | 1763 |
| AjiI | CACGTC | 1 cut(s) | 2636 |
| AjnI | CCWGG | 1 cut(s) | 2106 |
| AleI | CACNNNNGTG | 1 cut(s) | 2490 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 263, 295 |
| Alw21I | GWGCWC | 5 cut(s) | 213, 342, 463, 2523, 2635 |
| Alw26I | GTCTC | 6 cut(s) | 238, 269, 537, 1754, 1775, 2748 |
| Alw44I | GTGCAC | 1 cut(s) | 459 |
| AlwI | GGATC | 3 cut(s) | 12, 2839, 3189 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1574, 1694 |
| AoxI | GGCC | 7 cut(s) | 58, 787, 1014, 1086, 2151, 2588, 3125 |
| ApaI | GGGCCC | 1 cut(s) | 1018 |
| ApaLI | GTGCAC | 1 cut(s) | 459 |
| ApeKI | GCWGC | 6 cut(s) | 710, 1371, 2057, 2225, 2659, 3076 |
| ApoI | RAATTY | 6 cut(s) | 520, 1156, 1196, 2032, 2305, 3214 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 314, 346 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 816, 882 |
| AspLEI | GCGC | 1 cut(s) | 3025 |
| AspS9I | GGNCC | 4 cut(s) | 59, 293, 1014, 1015 |
| AsuHPI | GGTGA | 5 cut(s) | 247, 1403, 2717, 2816, 3014 |
| AsuII | TTCGAA | 1 cut(s) | 2742 |
| AvaII | GGWCC | 1 cut(s) | 293 |
| BaeGI | GKGCMC | 2 cut(s) | 463, 1018 |
| BalI | TGGCCA | 1 cut(s) | 2153 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 1 cut(s) | 1018 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1759, 1791 |
| BauI | CACGAG | 3 cut(s) | 2132, 2403, 2490 |
| BbsI | GAAGAC | 2 cut(s) | 220, 2095 |
| Bbv12I | GWGCWC | 5 cut(s) | 213, 342, 463, 2523, 2635 |
| BbvCI | CCTCAGC | 1 cut(s) | 928 |
| BbvI | GCAGC | 6 cut(s) | 722, 1383, 2044, 2212, 2671, 3063 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2722, 2756 |
| BciT130I | CCWGG | 1 cut(s) | 2108 |
| BciVI | GTATCC | 1 cut(s) | 574 |
| BclI | TGATCA | 1 cut(s) | 2701 |
| BcoDI | GTCTC | 6 cut(s) | 238, 269, 537, 1754, 1775, 2748 |
| BcuI | ACTAGT | 1 cut(s) | 1763 |
| BfaI | CTAG | 3 cut(s) | 768, 831, 1764 |
| BfmI | CTRYAG | 2 cut(s) | 2226, 3077 |
| BfrI | CTTAAG | 1 cut(s) | 2372 |
| BfuAI | ACCTGC | 1 cut(s) | 2990 |
| BfuI | GTATCC | 1 cut(s) | 574 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2537 |
| BisI | GCNGC | 7 cut(s) | 711, 1372, 2058, 2226, 2660, 2667, 3077 |
| BlpI | GCTNAGC | 1 cut(s) | 2409 |
| BlsI | GCNGC | 7 cut(s) | 712, 1373, 2059, 2227, 2661, 2668, 3078 |
| BmcAI | AGTACT | 1 cut(s) | 2916 |
| Bme1390I | CCNGG | 1 cut(s) | 2108 |
| Bme18I | GGWCC | 1 cut(s) | 293 |
| BmgBI | CACGTC | 1 cut(s) | 2636 |
| BmgT120I | GGNCC | 4 cut(s) | 59, 293, 1014, 1015 |
| BmiI | GGNNCC | 7 cut(s) | 6, 188, 1016, 1039, 1614, 1734, 3060 |
| BmrFI | CCNGG | 1 cut(s) | 2108 |
| BmrI | ACTGGG | 3 cut(s) | 43, 1955, 2927 |
| BmuI | ACTGGG | 3 cut(s) | 43, 1955, 2927 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2760 |
| BpiI | GAAGAC | 2 cut(s) | 220, 2095 |
| BpmI | CTGGAG | 3 cut(s) | 290, 1419, 2205 |
| Bpu10I | CCTNAGC | 2 cut(s) | 928, 1290 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2409 |
| Bpu14I | TTCGAA | 1 cut(s) | 2742 |
| BpuEI | CTTGAG | 2 cut(s) | 1991, 2066 |
| BsaAI | YACGTR | 1 cut(s) | 719 |
| BsaBI | GATNNNNATC | 2 cut(s) | 384, 819 |
| BsaJI | CCNNGG | 1 cut(s) | 343 |
| BsaWI | WCCGGW | 1 cut(s) | 2748 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 203, 233, 263, 293, 993, 1023 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 271, 557, 832, 1024, 1047, 2113, 2269, 2844 |
| Bse1I | ACTGG | 5 cut(s) | 49, 1815, 1961, 2002, 2922 |
| Bse3DI | GCAATG | 5 cut(s) | 981, 1318, 1524, 1592, 1644 |
| Bse8I | GATNNNNATC | 2 cut(s) | 384, 819 |
| BseBI | CCWGG | 1 cut(s) | 2108 |
| BseDI | CCNNGG | 1 cut(s) | 343 |
| BseJI | GATNNNNATC | 2 cut(s) | 384, 819 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 271, 557, 832, 1024, 1047, 2113, 2269, 2844 |
| BseMI | GCAATG | 5 cut(s) | 981, 1318, 1524, 1592, 1644 |
| BseMII | CTCAG | 5 cut(s) | 86, 942, 1770, 2534, 2669 |
| BseNI | ACTGG | 5 cut(s) | 49, 1815, 1961, 2002, 2922 |
| BseRI | GAGGAG | 5 cut(s) | 287, 1526, 1646, 2290, 3117 |
| BseSI | GKGCMC | 2 cut(s) | 463, 1018 |
| BseXI | GCAGC | 6 cut(s) | 722, 1383, 2044, 2212, 2671, 3063 |
| BseYI | CCCAGC | 2 cut(s) | 264, 1428 |
| BsgI | GTGCAG | 1 cut(s) | 1695 |
| BshFI | GGCC | 7 cut(s) | 60, 789, 1016, 1088, 2153, 2590, 3127 |
| BsiHKAI | GWGCWC | 5 cut(s) | 213, 342, 463, 2523, 2635 |
| BsiSI | CCGG | 1 cut(s) | 2749 |
| BslFI | GGGAC | 2 cut(s) | 1411, 1943 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 271, 557, 832, 1024, 1047, 2113, 2269, 2844 |
| BsmAI | GTCTC | 6 cut(s) | 238, 269, 537, 1754, 1775, 2748 |
| BsmBI | CGTCTC | 2 cut(s) | 238, 269 |
| BsmFI | GGGAC | 2 cut(s) | 1411, 1943 |
| BsmI | GAATGC | 1 cut(s) | 1187 |
| BsnI | GGCC | 7 cut(s) | 60, 789, 1016, 1088, 2153, 2590, 3127 |
| Bsp119I | TTCGAA | 1 cut(s) | 2742 |
| Bsp120I | GGGCCC | 1 cut(s) | 1014 |
| Bsp1286I | GDGCHC | 6 cut(s) | 213, 342, 463, 1018, 2523, 2635 |
| Bsp1407I | TGTACA | 2 cut(s) | 901, 2337 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2409 |
| BspANI | GGCC | 7 cut(s) | 60, 789, 1016, 1088, 2153, 2590, 3127 |
| BspCNI | CTCAG | 5 cut(s) | 87, 941, 1771, 2535, 2668 |
| BspLI | GGNNCC | 7 cut(s) | 6, 188, 1016, 1039, 1614, 1734, 3060 |
| BspMAI | CTGCAG | 2 cut(s) | 2230, 3081 |
| BspMI | ACCTGC | 1 cut(s) | 2990 |
| BspPI | GGATC | 3 cut(s) | 12, 2839, 3189 |
| BspQI | GCTCTTC | 1 cut(s) | 873 |
| BspT104I | TTCGAA | 1 cut(s) | 2742 |
| BspTI | CTTAAG | 1 cut(s) | 2372 |
| BsrDI | GCAATG | 5 cut(s) | 981, 1318, 1524, 1592, 1644 |
| BsrGI | TGTACA | 2 cut(s) | 901, 2337 |
| BsrI | ACTGG | 5 cut(s) | 49, 1815, 1961, 2002, 2922 |
| BssECI | CCNNGG | 1 cut(s) | 343 |
| BssSI | CACGAG | 3 cut(s) | 2132, 2403, 2490 |
| Bst2BI | CACGAG | 3 cut(s) | 2132, 2403, 2490 |
| Bst2UI | CCWGG | 1 cut(s) | 2108 |
| Bst6I | CTCTTC | 4 cut(s) | 873, 1345, 1842, 3062 |
| BstAFI | CTTAAG | 1 cut(s) | 2372 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 451, 1526, 1646, 3020 |
| BstAUI | TGTACA | 2 cut(s) | 901, 2337 |
| BstBAI | YACGTR | 1 cut(s) | 719 |
| BstBI | TTCGAA | 1 cut(s) | 2742 |
| BstC8I | GCNNGC | 6 cut(s) | 124, 447, 637, 2529, 2664, 2980 |
| BstDEI | CTNAG | 8 cut(s) | 95, 928, 1290, 1779, 2409, 2543, 2655, 3063 |
| BstDSI | CCRYGG | 1 cut(s) | 343 |
| BstHHI | GCGC | 1 cut(s) | 3025 |
| BstMAI | GTCTC | 6 cut(s) | 238, 269, 537, 1754, 1775, 2748 |
| BstNI | CCWGG | 1 cut(s) | 2108 |
| BstNSI | RCATGY | 5 cut(s) | 449, 1419, 2531, 2666, 3178 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2760 |
| BstSCI | CCNGG | 1 cut(s) | 2106 |
| BstSFI | CTRYAG | 2 cut(s) | 2226, 3077 |
| BstSLI | GKGCMC | 2 cut(s) | 463, 1018 |
| BstV1I | GCAGC | 6 cut(s) | 722, 1383, 2044, 2212, 2671, 3063 |
| BstV2I | GAAGAC | 2 cut(s) | 220, 2095 |
| BstX2I | RGATCY | 3 cut(s) | 4, 2831, 3194 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2492, 3230 |
| BstYI | RGATCY | 3 cut(s) | 4, 2831, 3194 |
| BsuI | GTATCC | 1 cut(s) | 574 |
| BsuRI | GGCC | 7 cut(s) | 60, 789, 1016, 1088, 2153, 2590, 3127 |
| BtgI | CCRYGG | 1 cut(s) | 343 |
| BtgZI | GCGATG | 3 cut(s) | 806, 858, 2300 |
| BtrI | CACGTC | 1 cut(s) | 2636 |
| BtsI | GCAGTG | 3 cut(s) | 1381, 1712, 2034 |
| BveI | ACCTGC | 1 cut(s) | 2990 |
| Cac8I | GCNNGC | 6 cut(s) | 124, 447, 637, 2529, 2664, 2980 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1574, 1694 |
| CfoI | GCGC | 1 cut(s) | 3025 |
| Cfr13I | GGNCC | 4 cut(s) | 59, 293, 1014, 1015 |
| CpoI | CGGWCCG | 1 cut(s) | 293 |
| CseI | GACGC | 2 cut(s) | 641, 2049 |
| Csp6I | GTAC | 8 cut(s) | 216, 902, 935, 1566, 1686, 2338, 2789, 2915 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1254, 1289 |
| CspI | CGGWCCG | 1 cut(s) | 293 |
| CviQI | GTAC | 8 cut(s) | 216, 902, 935, 1566, 1686, 2338, 2789, 2915 |
| DdeI | CTNAG | 8 cut(s) | 95, 928, 1290, 1779, 2409, 2543, 2655, 3063 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 28, 613 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 28, 613 |
| EaeI | YGGCCR | 2 cut(s) | 2151, 2588 |
| Eam1104I | CTCTTC | 4 cut(s) | 873, 1345, 1842, 3062 |
| EarI | CTCTTC | 4 cut(s) | 873, 1345, 1842, 3062 |
| EciI | GGCGGA | 3 cut(s) | 824, 1362, 3249 |
| Eco24I | GRGCYC | 1 cut(s) | 1018 |
| Eco32I | GATATC | 1 cut(s) | 1102 |
| Eco47I | GGWCC | 1 cut(s) | 293 |
| Eco57I | CTGAAG | 4 cut(s) | 422, 1311, 1440, 2862 |
| EcoRI | GAATTC | 3 cut(s) | 520, 1156, 2032 |
| EcoRII | CCWGG | 1 cut(s) | 2106 |
| EcoRV | GATATC | 1 cut(s) | 1102 |
| EcoT22I | ATGCAT | 2 cut(s) | 1417, 3095 |
| EcoT38I | GRGCYC | 1 cut(s) | 1018 |
| Esp3I | CGTCTC | 2 cut(s) | 238, 269 |
| FaqI | GGGAC | 2 cut(s) | 1411, 1943 |
| FauI | CCCGC | 4 cut(s) | 131, 1117, 2206, 3144 |
| FbaI | TGATCA | 1 cut(s) | 2701 |
| FblI | GTMKAC | 2 cut(s) | 332, 2089 |
| Fnu4HI | GCNGC | 7 cut(s) | 711, 1372, 2058, 2226, 2660, 2667, 3077 |
| FriOI | GRGCYC | 1 cut(s) | 1018 |
| Fsp4HI | GCNGC | 7 cut(s) | 711, 1372, 2058, 2226, 2660, 2667, 3077 |
| FspBI | CTAG | 3 cut(s) | 768, 831, 1764 |
| GlaI | GCGC | 1 cut(s) | 3024 |
| GluI | GCNGC | 7 cut(s) | 711, 1372, 2058, 2226, 2660, 2667, 3077 |
| GsaI | CCCAGC | 2 cut(s) | 268, 1432 |
| GsuI | CTGGAG | 3 cut(s) | 290, 1419, 2205 |
| HaeIII | GGCC | 7 cut(s) | 60, 789, 1016, 1088, 2153, 2590, 3127 |
| HapII | CCGG | 1 cut(s) | 2749 |
| HgaI | GACGC | 2 cut(s) | 641, 2049 |
| HhaI | GCGC | 1 cut(s) | 3025 |
| Hin6I | GCGC | 1 cut(s) | 3023 |
| HinP1I | GCGC | 1 cut(s) | 3023 |
| HincII | GTYRAC | 1 cut(s) | 333 |
| HindII | GTYRAC | 1 cut(s) | 333 |
| HindIII | AAGCTT | 1 cut(s) | 2291 |
| HinfI | GANTC | 6 cut(s) | 1045, 1463, 1706, 1748, 2428, 3245 |
| HpaII | CCGG | 1 cut(s) | 2749 |
| HphI | GGTGA | 5 cut(s) | 247, 1403, 2717, 2816, 3014 |
| Hpy166II | GTNNAC | 6 cut(s) | 86, 333, 461, 1671, 2090, 2514 |
| Hpy188III | TCNNGA | 5 cut(s) | 2132, 2403, 2564, 2963, 3042 |
| Hpy8I | GTNNAC | 6 cut(s) | 86, 333, 461, 1671, 2090, 2514 |
| Hpy99I | CGWCG | 1 cut(s) | 337 |
| HpyCH4IV | ACGT | 5 cut(s) | 278, 718, 2635, 2947, 3200 |
| HpyF3I | CTNAG | 8 cut(s) | 95, 928, 1290, 1779, 2409, 2543, 2655, 3063 |
| HpySE526I | ACGT | 5 cut(s) | 278, 718, 2635, 2947, 3200 |
| HspAI | GCGC | 1 cut(s) | 3023 |
| Ksp22I | TGATCA | 1 cut(s) | 2701 |
| LguI | GCTCTTC | 1 cut(s) | 873 |
| LmnI | GCTCC | 9 cut(s) | 134, 140, 186, 337, 395, 1612, 1732, 2277, 3082 |
| Lsp1109I | GCAGC | 6 cut(s) | 722, 1383, 2044, 2212, 2671, 3063 |
| MaeI | CTAG | 3 cut(s) | 768, 831, 1764 |
| MaeII | ACGT | 5 cut(s) | 278, 718, 2635, 2947, 3200 |
| MaeIII | GTNAC | 9 cut(s) | 316, 370, 978, 1570, 1604, 1690, 2395, 2473, 3157 |
| MfeI | CAATTG | 1 cut(s) | 2592 |
| MflI | RGATCY | 3 cut(s) | 4, 2831, 3194 |
| MhlI | GDGCHC | 6 cut(s) | 213, 342, 463, 1018, 2523, 2635 |
| MlsI | TGGCCA | 1 cut(s) | 2153 |
| MluNI | TGGCCA | 1 cut(s) | 2153 |
| MlyI | GAGTC | 2 cut(s) | 1039, 1457 |
| MmeI | TCCRAC | 4 cut(s) | 271, 400, 651, 2250 |
| Mox20I | TGGCCA | 1 cut(s) | 2153 |
| Mph1103I | ATGCAT | 2 cut(s) | 1417, 3095 |
| MroXI | GAANNNNTTC | 2 cut(s) | 816, 882 |
| MscI | TGGCCA | 1 cut(s) | 2153 |
| MseI | TTAA | 9 cut(s) | 441, 951, 1257, 1791, 2013, 2295, 2373, 2553, 3268 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1437, 1478, 2490, 2526, 2964 |
| Msp20I | TGGCCA | 1 cut(s) | 2153 |
| MspA1I | CMGCKG | 4 cut(s) | 268, 932, 2048, 2225 |
| MspCI | CTTAAG | 1 cut(s) | 2372 |
| MspI | CCGG | 1 cut(s) | 2749 |
| MspR9I | CCNGG | 1 cut(s) | 2108 |
| MunI | CAATTG | 1 cut(s) | 2592 |
| Mva1269I | GAATGC | 1 cut(s) | 1187 |
| MvaI | CCWGG | 1 cut(s) | 2108 |
| NlaIV | GGNNCC | 7 cut(s) | 6, 188, 1016, 1039, 1614, 1734, 3060 |
| NmeAIII | GCCGAG | 1 cut(s) | 152 |
| NmuCI | GTSAC | 3 cut(s) | 316, 370, 2473 |
| NsiI | ATGCAT | 2 cut(s) | 1417, 3095 |
| NspI | RCATGY | 5 cut(s) | 449, 1419, 2531, 2666, 3178 |
| NspV | TTCGAA | 1 cut(s) | 2742 |
| OliI | CACNNNNGTG | 1 cut(s) | 2490 |
| PaeI | GCATGC | 3 cut(s) | 449, 2531, 2666 |
| PaqCI | CACCTGC | 1 cut(s) | 2990 |
| PciSI | GCTCTTC | 1 cut(s) | 873 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3047 |
| PctI | GAATGC | 1 cut(s) | 1187 |
| PdmI | GAANNNNTTC | 2 cut(s) | 816, 882 |
| PfeI | GAWTC | 4 cut(s) | 1706, 1748, 2428, 3245 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2113, 2269 |
| PkrI | GCNGC | 7 cut(s) | 712, 1373, 2059, 2227, 2661, 2668, 3078 |
| PleI | GAGTC | 2 cut(s) | 1039, 1457 |
| PpsI | GAGTC | 2 cut(s) | 1039, 1457 |
| Ppu21I | YACGTR | 1 cut(s) | 719 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2760 |
| Psp6I | CCWGG | 1 cut(s) | 2106 |
| PspFI | CCCAGC | 2 cut(s) | 264, 1428 |
| PspGI | CCWGG | 1 cut(s) | 2106 |
| PspN4I | GGNNCC | 7 cut(s) | 6, 188, 1016, 1039, 1614, 1734, 3060 |
| PspOMI | GGGCCC | 1 cut(s) | 1014 |
| PspPI | GGNCC | 4 cut(s) | 59, 293, 1014, 1015 |
| PstI | CTGCAG | 2 cut(s) | 2230, 3081 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1574, 1694 |
| PsuI | RGATCY | 3 cut(s) | 4, 2831, 3194 |
| PvuII | CAGCTG | 4 cut(s) | 268, 932, 2048, 2225 |
| RsaI | GTAC | 8 cut(s) | 217, 903, 936, 1567, 1687, 2339, 2790, 2916 |
| RsaNI | GTAC | 8 cut(s) | 216, 902, 935, 1566, 1686, 2338, 2789, 2915 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1437, 1478, 2490, 2526, 2964 |
| Rsr2I | CGGWCCG | 1 cut(s) | 293 |
| RsrII | CGGWCCG | 1 cut(s) | 293 |
| SalI | GTCGAC | 1 cut(s) | 331 |
| SapI | GCTCTTC | 1 cut(s) | 873 |
| SaqAI | TTAA | 9 cut(s) | 441, 951, 1257, 1791, 2013, 2295, 2373, 2553, 3268 |
| SatI | GCNGC | 7 cut(s) | 711, 1372, 2058, 2226, 2660, 2667, 3077 |
| Sau96I | GGNCC | 4 cut(s) | 59, 293, 1014, 1015 |
| ScaI | AGTACT | 1 cut(s) | 2916 |
| SchI | GAGTC | 2 cut(s) | 1039, 1457 |
| ScrFI | CCNGG | 1 cut(s) | 2108 |
| SduI | GDGCHC | 6 cut(s) | 213, 342, 463, 1018, 2523, 2635 |
| SfcI | CTRYAG | 2 cut(s) | 2226, 3077 |
| SfuI | TTCGAA | 1 cut(s) | 2742 |
| SinI | GGWCC | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1437, 1478, 2490, 2526, 2964 |
| SmlI | CTYRAG | 3 cut(s) | 2006, 2081, 2372 |
| SmoI | CTYRAG | 3 cut(s) | 2006, 2081, 2372 |
| SpeI | ACTAGT | 1 cut(s) | 1763 |
| SphI | GCATGC | 3 cut(s) | 449, 2531, 2666 |
| SspMI | CTAG | 3 cut(s) | 768, 831, 1764 |
| StyD4I | CCNGG | 1 cut(s) | 2106 |
| TaiI | ACGT | 5 cut(s) | 281, 721, 2638, 2950, 3203 |
| TaqI | TCGA | 5 cut(s) | 332, 427, 2431, 2742, 3041 |
| TaqII | GACCGA | 1 cut(s) | 310 |
| TatI | WGTACW | 4 cut(s) | 901, 934, 2337, 2914 |
| TauI | GCSGC | 1 cut(s) | 2669 |
| TfiI | GAWTC | 4 cut(s) | 1706, 1748, 2428, 3245 |
| Tru1I | TTAA | 9 cut(s) | 441, 951, 1257, 1791, 2013, 2295, 2373, 2553, 3268 |
| Tru9I | TTAA | 9 cut(s) | 441, 951, 1257, 1791, 2013, 2295, 2373, 2553, 3268 |
| TseFI | GTSAC | 3 cut(s) | 316, 370, 2473 |
| TseI | GCWGC | 6 cut(s) | 710, 1371, 2057, 2225, 2659, 3076 |
| Tsp45I | GTSAC | 3 cut(s) | 316, 370, 2473 |
| TspGWI | ACGGA | 3 cut(s) | 350, 382, 1257 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2113, 2269 |
| Vha464I | CTTAAG | 1 cut(s) | 2372 |
| VneI | GTGCAC | 1 cut(s) | 459 |
| VpaK11BI | GGWCC | 1 cut(s) | 293 |
| XapI | RAATTY | 6 cut(s) | 520, 1156, 1196, 2032, 2305, 3214 |
| XceI | RCATGY | 5 cut(s) | 449, 1419, 2531, 2666, 3178 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 265, 1436 |
| XmiI | GTMKAC | 2 cut(s) | 332, 2089 |
| XmnI | GAANNNNTTC | 2 cut(s) | 816, 882 |
| XspI | CTAG | 3 cut(s) | 768, 831, 1764 |
| ZrmI | AGTACT | 1 cut(s) | 2916 |
| Zsp2I | ATGCAT | 2 cut(s) | 1417, 3095 |