Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Forward (+)

12755696 .. 12758463

Gene Structure 2768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G095100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGATGCTTCATCTGTACTTTATAACAGTGTTAAAGCACATGCTTCTGTTGCAACATTACACCAAAAAGAGATTGAAGGCGGAATTGTTTGGGCACGCCAGCTGGGTGGGGAGGAAGGTCTTATTCTTGAGGGAACTCCAGCTGCAGAAGGGGTTTCGGCTAGTGATATGTTGAAACGCCAAATAATTTCTCGTGGAGCTGCCTTCGTTGAGTTTACAGAGCATCAGCATGCACTTGTGGCCCTGAGAGTTTTGAACAACAATCCTGGTGATGGTCCTAAGCATCGCCCAATTGTGGAGTTTGCACCTGAGAATGTTAAAAAATTGAATATACGAAATGCTAAGATACAAGCACAGCAGCGTGCAGCTCATCGTAATCGGGAAAACGTGCATCAAAATGAAGGCTCAAATAGACCAGATACTCATCCAAGCAAGAAGTCCAAAAACTCGAAACAAAAAGGGGAAAAGCCAAAATTGGATGATTCAGTACCAAATAAAGAAGACGAAGTTGAAAATAAGTTTAGTGATGGAGCTGCCACCGAAAGACAGAGAGGTTCTAAGTGGCAGAAAAATGGTCCATTTGGAAAGGTAAAAAAGATCTCATCAAAGGTATCAGGACAATCAACAACAGAGAAGGCAGAAGGCTCAAAACGTGAACCAAACAATCATCAAGATGGCAGGAAGGCTGGTGAGGTAGGGGGGTTTGGGGGGGGTGGGGTGTGGGCAGCGGGCGGGGGGGAGGAGAATGTGACTAGGAGAAAGAGGCCAAAGAAGAATAAGGACCCATTAGGGAGGGATGTTACAGATAAACTCGACACGCTGATTGAACAATATAGATCCAACTACTCGCAACGGAGCTCCGTCCAAACTGATGGTGAAAAGCAAGGTTCCAGAAATCTTAGTAAATGGTTCCAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

307

Amino Acids

33.63

Weight (kDa)

9.77

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AciI	CCGC	3 cut(s)	81, 728, 732
AclWI	GGATC	1 cut(s)	831
AfaI	GTAC	2 cut(s)	18, 489
AfiI	CCNNNNNNNGG	2 cut(s)	272, 295
AgsI	TTSAA	6 cut(s)	77, 175, 256, 328, 512, 827
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	6 cut(s)	103, 143, 200, 368, 533, 858
AluI	AGCT	6 cut(s)	103, 143, 200, 368, 533, 858
Alw21I	GWGCWC	1 cut(s)	860
AlwI	GGATC	1 cut(s)	831
AoxI	GGCC	2 cut(s)	240, 764
ApeKI	GCWGC	6 cut(s)	143, 200, 358, 365, 533, 725
AspS9I	GGNCC	4 cut(s)	241, 275, 575, 781
AsuHPI	GGTGA	3 cut(s)	281, 701, 887
AvaII	GGWCC	3 cut(s)	275, 575, 781
BaeGI	GKGCMC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	860
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	860
BbvI	GCAGC	6 cut(s)	130, 187, 370, 377, 520, 737
BccI	CCATC	4 cut(s)	266, 521, 668, 866
BciT130I	CCWGG	1 cut(s)	267
BfaI	CTAG	2 cut(s)	162, 753
BfmI	CTRYAG	1 cut(s)	144
BglII	AGATCT	1 cut(s)	597
BisI	GCNGC	6 cut(s)	144, 201, 359, 366, 534, 726
BlsI	GCNGC	6 cut(s)	145, 202, 360, 367, 535, 727
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	3 cut(s)	275, 575, 781
BmgT120I	GGNCC	4 cut(s)	241, 275, 575, 781
BmiI	GGNNCC	3 cut(s)	783, 889, 911
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	3 cut(s)	232, 292, 400
BpiI	GAAGAC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 295
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	267
BseGI	GGATG	4 cut(s)	10, 424, 484, 802
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	272, 295
BseMII	CTCAG	2 cut(s)	236, 300
BseRI	GAGGAG	1 cut(s)	755
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	6 cut(s)	130, 187, 370, 377, 520, 737
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	242, 766
BsiHKAI	GWGCWC	1 cut(s)	860
BslI	CCNNNNNNNGG	2 cut(s)	272, 295
BsnI	GGCC	2 cut(s)	242, 766
Bsp1286I	GDGCHC	2 cut(s)	97, 860
Bsp143I	GATC	2 cut(s)	597, 836
BspACI	CCGC	3 cut(s)	81, 728, 732
BspANI	GGCC	2 cut(s)	242, 766
BspCNI	CTCAG	2 cut(s)	237, 301
BspLI	GGNNCC	3 cut(s)	783, 889, 911
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	1 cut(s)	831
BssMI	GATC	2 cut(s)	597, 836
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	29
BstC8I	GCNNGC	5 cut(s)	97, 101, 231, 363, 730
BstDEI	CTNAG	6 cut(s)	245, 279, 309, 342, 558, 899
BstF5I	GGATG	4 cut(s)	10, 424, 484, 802
BstKTI	GATC	2 cut(s)	600, 839
BstMBI	GATC	2 cut(s)	597, 836
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 239
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	2 cut(s)	44, 233
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	6 cut(s)	130, 187, 370, 377, 520, 737
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	2 cut(s)	597, 836
BstXI	CCANNNNNNTGG	2 cut(s)	107, 872
BstYI	RGATCY	2 cut(s)	597, 836
BsuRI	GGCC	2 cut(s)	242, 766
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	4 cut(s)	10, 424, 484, 802
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	5 cut(s)	97, 101, 231, 363, 730
Cfr13I	GGNCC	4 cut(s)	241, 275, 575, 781
Csp6I	GTAC	2 cut(s)	17, 488
CviAII	CATG	2 cut(s)	41, 230
CviQI	GTAC	2 cut(s)	17, 488
DdeI	CTNAG	6 cut(s)	245, 279, 309, 342, 558, 899
DpnI	GATC	2 cut(s)	599, 838
DpnII	GATC	2 cut(s)	597, 836
EciI	GGCGGA	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	858
Eco24I	GRGCYC	1 cut(s)	860
Eco47I	GGWCC	3 cut(s)	275, 575, 781
Eco53kI	GAGCTC	1 cut(s)	858
EcoICRI	GAGCTC	1 cut(s)	858
EcoO109I	RGGNCCY	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	860
FaeI	CATG	2 cut(s)	44, 233
FaiI	YATR	7 cut(s)	24, 42, 170, 231, 332, 834, 919
FatI	CATG	2 cut(s)	40, 229
FauI	CCCGC	2 cut(s)	721, 725
Fnu4HI	GCNGC	6 cut(s)	144, 201, 359, 366, 534, 726
FokI	GGATG	4 cut(s)	17, 411, 491, 809
FriOI	GRGCYC	1 cut(s)	860
Fsp4HI	GCNGC	6 cut(s)	144, 201, 359, 366, 534, 726
FspBI	CTAG	2 cut(s)	162, 753
GluI	GCNGC	6 cut(s)	144, 201, 359, 366, 534, 726
GsaI	CCCAGC	1 cut(s)	107
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	242, 766
Hin1II	CATG	2 cut(s)	44, 233
HinfI	GANTC	1 cut(s)	482
HphI	GGTGA	3 cut(s)	281, 701, 887
Hpy166II	GTNNAC	2 cut(s)	216, 656
Hpy188III	TCNNGA	5 cut(s)	128, 380, 615, 671, 891
Hpy8I	GTNNAC	2 cut(s)	216, 656
HpyAV	CCTTC	8 cut(s)	71, 110, 143, 214, 395, 628, 635, 676
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	2 cut(s)	387, 652
HpyCH4V	TGCA	6 cut(s)	53, 146, 233, 305, 365, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 239
HpyF3I	CTNAG	6 cut(s)	245, 279, 309, 342, 558, 899
HpySE526I	ACGT	2 cut(s)	387, 652
Hsp92II	CATG	2 cut(s)	44, 233
Kzo9I	GATC	2 cut(s)	597, 836
LmnI	GCTCC	4 cut(s)	197, 530, 855, 863
Lsp1109I	GCAGC	6 cut(s)	130, 187, 370, 377, 520, 737
LweI	GCATC	3 cut(s)	232, 292, 400
MaeI	CTAG	2 cut(s)	162, 753
MaeII	ACGT	2 cut(s)	387, 652
MaeIII	GTNAC	2 cut(s)	748, 799
MalI	GATC	2 cut(s)	599, 838
MboI	GATC	2 cut(s)	597, 836
MboII	GAAGA	2 cut(s)	512, 784
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	2 cut(s)	597, 836
MhlI	GDGCHC	2 cut(s)	97, 860
MluCI	AATT	5 cut(s)	84, 186, 291, 323, 473
MmeI	TCCRAC	1 cut(s)	864
MnlI	CCTC	7 cut(s)	106, 124, 545, 685, 733, 756, 786
MseI	TTAA	2 cut(s)	33, 318
MslI	CAYNNNNRTG	3 cut(s)	228, 396, 672
MspA1I	CMGCKG	3 cut(s)	103, 143, 728
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	50, 239
NdeII	GATC	2 cut(s)	597, 836
NlaIII	CATG	2 cut(s)	44, 233
NlaIV	GGNNCC	3 cut(s)	783, 889, 911
NmuCI	GTSAC	1 cut(s)	748
NspI	RCATGY	2 cut(s)	44, 233
PaeI	GCATGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	482
PkrI	GCNGC	6 cut(s)	145, 202, 360, 367, 535, 727
PpuMI	RGGWCCY	1 cut(s)	781
PsiI	TTATAA	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	860
Psp5II	RGGWCCY	1 cut(s)	781
Psp6I	CCWGG	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	3 cut(s)	783, 889, 911
PspPI	GGNCC	4 cut(s)	241, 275, 575, 781
PspPPI	RGGWCCY	1 cut(s)	781
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	597, 836
PvuII	CAGCTG	2 cut(s)	103, 143
RsaI	GTAC	2 cut(s)	18, 489
RsaNI	GTAC	2 cut(s)	17, 488
RseI	CAYNNNNRTG	3 cut(s)	228, 396, 672
SacI	GAGCTC	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	33, 318
SatI	GCNGC	6 cut(s)	144, 201, 359, 366, 534, 726
Sau3AI	GATC	2 cut(s)	597, 836
Sau96I	GGNCC	4 cut(s)	241, 275, 575, 781
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	2 cut(s)	97, 860
SfaNI	GCATC	3 cut(s)	232, 292, 400
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	3 cut(s)	275, 575, 781
SmiMI	CAYNNNNRTG	3 cut(s)	228, 396, 672
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	5 cut(s)	84, 186, 291, 323, 473
SsiI	CCGC	3 cut(s)	81, 728, 732
SspMI	CTAG	2 cut(s)	162, 753
SstI	GAGCTC	1 cut(s)	860
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	2 cut(s)	390, 655
TaqI	TCGA	2 cut(s)	449, 813
TasI	AATT	5 cut(s)	84, 186, 291, 323, 473
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	33, 318
Tru9I	TTAA	2 cut(s)	33, 318
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	6 cut(s)	143, 200, 358, 365, 533, 725
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	2 cut(s)	850, 868
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	3 cut(s)	275, 575, 781
XceI	RCATGY	2 cut(s)	44, 233
XspI	CTAG	2 cut(s)	162, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.