Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Forward (+)

23258238 .. 23268102

Gene Structure 9865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG145400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3309 bp

ATGCACGGCCGTACCAAAACTGCCCTCCACAAGATGGATCCAAATCCTAAAAAGACTTTCGGGTCATCAAAACCCGAAGCCCAGTTAGTAGGCCCAAATGAGAACCTGAAGGGTTGTAAACCCACCCTGAGAGGTTTTAAGTCCATTCCATTCGCCCGCCGAGCAGGAGCAGGAGCAGGAGCAGAAGCAGAAGCAGAGATGGGGAAGAAGAAAAGCAAAGACGGGAGCCATCCCAGAACCGAAACCGAGCACTGTACCTCCACCGTCTTCGTCTCCAATTTGCCCTACTCTTTCACCAATTCCCAGCTGGAGGAGACGTTCAGTGAAGTCGGACCGATCAGGCGGTGCTTTATGGTCACAAAAAAGGGGTCGACGGAGCACCGTGGTTTTGGCTTTGTTCAATTTGCTGTCACAACTGATGCTGATCGCTCTGTGGAGCTGAAGAATGGTGTGTCTGTTGGAGGTCGAAAGATTGCTGTTAAGCATGCCATGCACCGTGCACCTTTTGAACAACGAAGGTCAAAGAAAGATCAAGGTTCTGAATTGGATGAAACTATGAATTCAAAAAATGGCAAGGATGGAGACAATCCTAAAGAGGGAAAGGGTGCTTCAAACTTGGATACAAGAGAGATCAAATTGGATAAGACCATGAAGTCAAAGAATGACAAGGATGCTGGCAATTTGAAAAAGGAAAAGGATGCTTCAAAGTTGGAGGAAAAAGAAAAAACTGTGAAACCCAGAAAACCAGCAGCACCACGTAAAGATGTAGTGGCAAAAGTGGGAGGTTCTGAAAAGCAGAGGGTTGCTAGGACTGTTATATTTGGTGGCCTTCTCAATGCTGGTATGGCGGAAGATGTTCATCGCCAAGCTAGGGAGGTTGGCGATGTGTGTTCTATAACTTATCCTTTTCCCAGAGAAGAGCTTCAACAACATGGTCTTGTACAAGATGGATGCAAAATGGATGCCTCAGCTGTACTTTACAACAGTGTTAAATCAGCTCATGCTTCTGTTGCAATGTTACACCAAAAGGAGATAAAAGGAGGAATTGTTTGGGCCCGTCAGTTGGGTGGGGAGGGTTCCAAGACTCGGAAGTGGAAGCTCATTGTCAGAAATCTTCCTTTCAAGGCCAAAGTCAGTGATATCAAAGATATGTTTTCATCTGCGGGATTTGTCTGGGAGGTTTATATACCACAGAATTCTGATACAGGGTTGTCTAAAGGTTTTGCATTCGTCAAATTCACACGCAGACAAGATGTGGAAAATGCAATACAAAAGTTCAACGGACAAAAACTTCTTAAAAGACCAATAGCTGTGGATTGGGCTGTTCCTAAGCAGATATATGGTAGTGGCAATGATGCCCTTGCTTCAGAAGATGGAGAAAAGGGCGGAAGAGATGGGGGAAATGATAGCAGCAGTGATGATTTTGAGGGTGATGCTGGAGATGATGGAGATGCATGTAAAAAGTCCCAGCACCTTGATGGGATTGACAGTGCTTCAGATGACTCCAATACCACAGAGATGAAAGACATCCCTACTGAAATTGATTTTGAGGAGGAAGCAGACATAGCAAGAAAAGTTCTAAAAAACTTGACCACGCCCTCTGGTACAGTAACTGCTGTTGATAATTCTGCATTGCCCAAAGGTAACCAGGAGCCAACTATTGATTTTGAGGAGGAAGCAGACATTGCAAGAAAAGTTCTAAAAAAGTTTACCACACCCTCTGGTACAGTAACTGCTGTTGATGATTCTGCACTGCCCATAAGCAACAAGGAGCCAACTATTGAAGAATCTGCTAATGAGACTAGTAAGTTAGCTTCCGAGACTGCGGTTAATAAATTATCTTCTGAAAGTGCCAGTGCATCAGATGTTGCTAAACCACAAATGGAAGAGGTAGATGATTTGCATAGAACAATTTTCATCAGCAACCTTCCTTTTGAGATCACTAATGAAGAAGTCAAACAAAGGTTTTCTGCTTTCGGGGAAGTGCAATCTTTTGTCCCAGTTCTTCATCCACTTACCAAGCGACCAAAAGGAACTGGCTTTCTCAAGTTTAAGACAATAGATGCAGTGAATTCTGCTGTTTCAGCTGGTAGTGCTGCATCTGGCTTGGGGATTTTTCTCAAGGGTAGACAACTGACAGTCTTCCAGGCTTTGGATAGAAAATCGGCTCACGAGAAGGAAGAAAATATGGCCAAAAAAGAGGACATAGACCACCGCAATCTCTATTTGGCAAAGGAAGGTCTTATTCTTGCGGGAACTCCAGCTGCAGAAGGGGTTTCAGCTAATGATATGTCAAAACGCCAAATGTTGGAGAGGAGCAAGGCGATGAAGCTTAAATCTCCAAATTTTCATGTTTCAAAGACAAGATTAGTTATGTACAATTTGCCAAAGTCCATGACTGAAAAACAGCTTAAGAAACTTTGTATGGATGCTGTTACCTCACGAGCTAAGCTACAAAAACCTGTGATTCGACAGATAAAGTGCTTGAAGGATGTGAAAAAGGGAAAGATTGTCACAAAGAACCACTCTCGTGGTGTTGCTTTCATTGAGTTTACAGAGCACCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGTTCAGAACATCGGCCAATTGTGGAGTTTGCACTTGATAATGTTCAGAAATTGAGAGCACGTCAGGTATCACAACAAACTCAGCAGCATGCCGCTAATGGTAATCAGAAAGAGGGGCGACAATTTGATCACTCAAATAGAGCAGATGCTCACCCAAGCAAGAAGTTCGAAAACCGGATAGACAAAGGTGATAAGCGAAAAATGGACGAGGTAGTACCAAATAAAGAGGGTGAAGTGGAAAATAGGGTAAGTGATGGATCTGCCACTGAAGGGCAGAGATTTCCCAAGAGGCAGAAGAATGGTTCAGATAGAAAGGCAGAAAAGATTTCATCAAAAGAAGTACTGGGAGGCTCATCGGTGGAAGGTTCAAAACGTGGAAGGCATCATCAAGATGGCAGGAAGGCTGGCGGTGGAAGATTGTTTGCAGGTGAAATCAAGGCAGTTGATTCGCCCTTATCAGTATCTTCCAGAAAGACGAATGTGGAACCTAAGAAGAGGAAGCTGCAGGAGCAAAAATGCATGGAGGGAGGAGAGAACATGATGAGAAGAAGGCCAAAGAATAAAGACCCAACAGGGCGGGATGTTACAGATAAACTTGACATGCTGATTGAAAAATATAGATCCACGTTCTCACATCAAAATTCCTTCCAAAAAGGTGGCGGAAGGCAAGATTCAATTAGAAAATGGATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

1102

Amino Acids

121.56

Weight (kDa)

9.45

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	89 - 158	3.3e-16	RNA recognition motif
RRM_1	PF00076	367 - 436	3.7e-15	RNA recognition motif
RRM_1	PF00076	638 - 695	1.5e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3029
AasI	GACNNNNNNGTC	2 cut(s)	61, 652
Acc36I	ACCTGC	1 cut(s)	3029
AccB7I	CCANNNNNTGG	3 cut(s)	34, 2152, 2308
AccI	GTMKAC	2 cut(s)	371, 2128
AclWI	GGATC	4 cut(s)	32, 45, 2878, 3228
AcoI	YGGCCR	3 cut(s)	7, 2190, 2627
AcsI	RAATTY	6 cut(s)	559, 1195, 1235, 2071, 2344, 3253
AcuI	CTGAAG	5 cut(s)	128, 461, 1350, 1479, 2901
AfaI	GTAC	9 cut(s)	13, 256, 942, 975, 1606, 1726, 2378, 2829, 2955
AfiI	CCNNNNNNNGG	9 cut(s)	34, 310, 596, 871, 1063, 1086, 2152, 2308, 2883
AflII	CTTAAG	1 cut(s)	2411
AhlI	ACTAGT	1 cut(s)	1802
AjiI	CACGTC	1 cut(s)	2675
AjnI	CCWGG	2 cut(s)	1647, 2145
AleI	CACNNNNGTG	1 cut(s)	2529
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
Alw21I	GWGCWC	5 cut(s)	252, 381, 502, 2562, 2674
Alw26I	GTCTC	5 cut(s)	277, 308, 576, 1793, 1814
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	4 cut(s)	32, 45, 2878, 3228
AlwNI	CAGNNNCTG	2 cut(s)	1613, 1733
AoxI	GGCC	8 cut(s)	7, 91, 826, 1053, 1125, 2190, 2627, 3164
ApaI	GGGCCC	1 cut(s)	1057
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	6 cut(s)	749, 1410, 2096, 2264, 2698, 3115
ApoI	RAATTY	6 cut(s)	559, 1195, 1235, 2071, 2344, 3253
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
Asp700I	GAANNNNTTC	2 cut(s)	855, 921
AspS9I	GGNCC	4 cut(s)	92, 332, 1053, 1054
AsuHPI	GGTGA	6 cut(s)	286, 1442, 2756, 2813, 2855, 3053
AsuII	TTCGAA	1 cut(s)	2781
AvaII	GGWCC	1 cut(s)	332
BaeGI	GKGCMC	2 cut(s)	502, 1057
BaeI	ACNNNNGTAYC	1 cut(s)	28
BalI	TGGCCA	1 cut(s)	2192
BamHI	GGATCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	1057
BarI	GAAGNNNNNNTAC	2 cut(s)	1798, 1830
BauI	CACGAG	3 cut(s)	2171, 2442, 2529
BbsI	GAAGAC	2 cut(s)	259, 2134
Bbv12I	GWGCWC	5 cut(s)	252, 381, 502, 2562, 2674
BbvCI	CCTCAGC	1 cut(s)	967
BbvI	GCAGC	6 cut(s)	761, 1422, 2083, 2251, 2710, 3102
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	4 cut(s)	2761, 2795, 3042, 3076
BciT130I	CCWGG	2 cut(s)	1649, 2147
BciVI	GTATCC	1 cut(s)	613
BclI	TGATCA	1 cut(s)	2740
BcoDI	GTCTC	5 cut(s)	277, 308, 576, 1793, 1814
BcuI	ACTAGT	1 cut(s)	1802
BfaI	CTAG	3 cut(s)	807, 870, 1803
BfmI	CTRYAG	2 cut(s)	2265, 3116
BfrI	CTTAAG	1 cut(s)	2411
BfuAI	ACCTGC	1 cut(s)	3029
BfuI	GTATCC	1 cut(s)	613
BglI	GCCNNNNNGGC	1 cut(s)	2576
BisI	GCNGC	7 cut(s)	750, 1411, 2097, 2265, 2699, 2706, 3116
BlpI	GCTNAGC	1 cut(s)	2448
BlsI	GCNGC	7 cut(s)	751, 1412, 2098, 2266, 2700, 2707, 3117
BmcAI	AGTACT	1 cut(s)	2955
Bme1390I	CCNGG	2 cut(s)	1649, 2147
Bme18I	GGWCC	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	2675
BmgT120I	GGNCC	4 cut(s)	92, 332, 1053, 1054
BmiI	GGNNCC	7 cut(s)	39, 227, 1055, 1078, 1653, 1773, 3099
BmrFI	CCNGG	2 cut(s)	1649, 2147
BmrI	ACTGGG	3 cut(s)	76, 1994, 2966
BmuI	ACTGGG	3 cut(s)	76, 1994, 2966
BpiI	GAAGAC	2 cut(s)	259, 2134
BpmI	CTGGAG	3 cut(s)	329, 1458, 2244
Bpu10I	CCTNAGC	2 cut(s)	967, 1329
Bpu1102I	GCTNAGC	1 cut(s)	2448
Bpu14I	TTCGAA	1 cut(s)	2781
BpuEI	CTTGAG	2 cut(s)	2030, 2105
BsaAI	YACGTR	1 cut(s)	758
BsaBI	GATNNNNATC	3 cut(s)	42, 423, 858
BsaJI	CCNNGG	1 cut(s)	382
BsaWI	WCCGGW	1 cut(s)	2787
BsaXI	ACNNNNNCTCC	6 cut(s)	242, 272, 302, 332, 1032, 1062
Bsc4I	CCNNNNNNNGG	9 cut(s)	34, 310, 596, 871, 1063, 1086, 2152, 2308, 2883
Bse1I	ACTGG	5 cut(s)	82, 1854, 2000, 2041, 2961
Bse3DI	GCAATG	4 cut(s)	1020, 1357, 1631, 1683
Bse8I	GATNNNNATC	3 cut(s)	42, 423, 858
BseBI	CCWGG	2 cut(s)	1649, 2147
BseDI	CCNNGG	1 cut(s)	382
BseJI	GATNNNNATC	3 cut(s)	42, 423, 858
BseLI	CCNNNNNNNGG	9 cut(s)	34, 310, 596, 871, 1063, 1086, 2152, 2308, 2883
BseMI	GCAATG	4 cut(s)	1020, 1357, 1631, 1683
BseMII	CTCAG	4 cut(s)	119, 981, 2573, 2708
BseNI	ACTGG	5 cut(s)	82, 1854, 2000, 2041, 2961
BseRI	GAGGAG	5 cut(s)	326, 1565, 1685, 2329, 3156
BseSI	GKGCMC	2 cut(s)	502, 1057
BseX3I	CGGCCG	1 cut(s)	7
BseXI	GCAGC	6 cut(s)	761, 1422, 2083, 2251, 2710, 3102
BseYI	CCCAGC	2 cut(s)	303, 1467
BsgI	GTGCAG	1 cut(s)	1734
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	8 cut(s)	9, 93, 828, 1055, 1127, 2192, 2629, 3166
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	5 cut(s)	252, 381, 502, 2562, 2674
BsiSI	CCGG	1 cut(s)	2788
BslFI	GGGAC	2 cut(s)	1450, 1982
BslI	CCNNNNNNNGG	9 cut(s)	34, 310, 596, 871, 1063, 1086, 2152, 2308, 2883
BsmAI	GTCTC	5 cut(s)	277, 308, 576, 1793, 1814
BsmBI	CGTCTC	2 cut(s)	277, 308
BsmFI	GGGAC	2 cut(s)	1450, 1982
BsmI	GAATGC	1 cut(s)	1226
BsnI	GGCC	8 cut(s)	9, 93, 828, 1055, 1127, 2192, 2629, 3166
Bsp119I	TTCGAA	1 cut(s)	2781
Bsp120I	GGGCCC	1 cut(s)	1053
Bsp1286I	GDGCHC	6 cut(s)	252, 381, 502, 1057, 2562, 2674
Bsp1407I	TGTACA	2 cut(s)	940, 2376
Bsp143I	GATC	9 cut(s)	37, 336, 424, 529, 630, 1938, 2740, 2870, 3233
Bsp1720I	GCTNAGC	1 cut(s)	2448
BspANI	GGCC	8 cut(s)	9, 93, 828, 1055, 1127, 2192, 2629, 3166
BspCNI	CTCAG	4 cut(s)	120, 980, 2574, 2707
BspLI	GGNNCC	7 cut(s)	39, 227, 1055, 1078, 1653, 1773, 3099
BspMAI	CTGCAG	2 cut(s)	2269, 3120
BspMI	ACCTGC	1 cut(s)	3029
BspPI	GGATC	4 cut(s)	32, 45, 2878, 3228
BspQI	GCTCTTC	1 cut(s)	912
BspT104I	TTCGAA	1 cut(s)	2781
BspTI	CTTAAG	1 cut(s)	2411
BsrDI	GCAATG	4 cut(s)	1020, 1357, 1631, 1683
BsrGI	TGTACA	2 cut(s)	940, 2376
BsrI	ACTGG	5 cut(s)	82, 1854, 2000, 2041, 2961
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	9 cut(s)	37, 336, 424, 529, 630, 1938, 2740, 2870, 3233
BssSI	CACGAG	3 cut(s)	2171, 2442, 2529
Bst2BI	CACGAG	3 cut(s)	2171, 2442, 2529
Bst2UI	CCWGG	2 cut(s)	1649, 2147
Bst6I	CTCTTC	4 cut(s)	912, 1384, 1881, 3101
BstAFI	CTTAAG	1 cut(s)	2411
BstAPI	GCANNNNNTGC	2 cut(s)	490, 1685
BstAUI	TGTACA	2 cut(s)	940, 2376
BstBAI	YACGTR	1 cut(s)	758
BstBI	TTCGAA	1 cut(s)	2781
BstC8I	GCNNGC	6 cut(s)	157, 486, 676, 2568, 2703, 3019
BstDEI	CTNAG	7 cut(s)	128, 967, 1329, 2448, 2582, 2694, 3102
BstDSI	CCRYGG	1 cut(s)	382
BstEII	GGTNACC	1 cut(s)	1643
BstKTI	GATC	9 cut(s)	40, 339, 427, 532, 633, 1941, 2743, 2873, 3236
BstMAI	GTCTC	5 cut(s)	277, 308, 576, 1793, 1814
BstMBI	GATC	9 cut(s)	37, 336, 424, 529, 630, 1938, 2740, 2870, 3233
BstMCI	CGRYCG	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	1649, 2147
BstNSI	RCATGY	5 cut(s)	488, 1458, 2570, 2705, 3217
BstPI	GGTNACC	1 cut(s)	1643
BstSCI	CCNGG	2 cut(s)	1647, 2145
BstSFI	CTRYAG	2 cut(s)	2265, 3116
BstSLI	GKGCMC	2 cut(s)	502, 1057
BstV1I	GCAGC	6 cut(s)	761, 1422, 2083, 2251, 2710, 3102
BstV2I	GAAGAC	2 cut(s)	259, 2134
BstX2I	RGATCY	3 cut(s)	37, 2870, 3233
BstXI	CCANNNNNNTGG	2 cut(s)	2531, 3269
BstYI	RGATCY	3 cut(s)	37, 2870, 3233
BstZI	CGGCCG	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	8 cut(s)	9, 93, 828, 1055, 1127, 2192, 2629, 3166
BtgI	CCRYGG	1 cut(s)	382
BtgZI	GCGATG	3 cut(s)	845, 897, 2339
BtrI	CACGTC	1 cut(s)	2675
BtsI	GCAGTG	3 cut(s)	1420, 1751, 2073
BveI	ACCTGC	1 cut(s)	3029
Cac8I	GCNNGC	6 cut(s)	157, 486, 676, 2568, 2703, 3019
CaiI	CAGNNNCTG	2 cut(s)	1613, 1733
Cfr13I	GGNCC	4 cut(s)	92, 332, 1053, 1054
CpoI	CGGWCCG	1 cut(s)	332
Csp6I	GTAC	9 cut(s)	12, 255, 941, 974, 1605, 1725, 2377, 2828, 2954
CspCI	CAANNNNNGTGG	2 cut(s)	1293, 1328
CspI	CGGWCCG	1 cut(s)	332
CviQI	GTAC	9 cut(s)	12, 255, 941, 974, 1605, 1725, 2377, 2828, 2954
DdeI	CTNAG	7 cut(s)	128, 967, 1329, 2448, 2582, 2694, 3102
DpnI	GATC	9 cut(s)	39, 338, 426, 531, 632, 1940, 2742, 2872, 3235
DpnII	GATC	9 cut(s)	37, 336, 424, 529, 630, 1938, 2740, 2870, 3233
DrdI	GACNNNNNNGTC	2 cut(s)	61, 652
DseDI	GACNNNNNNGTC	2 cut(s)	61, 652
EaeI	YGGCCR	3 cut(s)	7, 2190, 2627
EagI	CGGCCG	1 cut(s)	7
Eam1104I	CTCTTC	4 cut(s)	912, 1384, 1881, 3101
EarI	CTCTTC	4 cut(s)	912, 1384, 1881, 3101
EciI	GGCGGA	3 cut(s)	863, 1401, 3288
EclXI	CGGCCG	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	1057
Eco32I	GATATC	1 cut(s)	1141
Eco47I	GGWCC	1 cut(s)	332
Eco52I	CGGCCG	1 cut(s)	7
Eco57I	CTGAAG	5 cut(s)	128, 461, 1350, 1479, 2901
Eco91I	GGTNACC	1 cut(s)	1643
EcoO65I	GGTNACC	1 cut(s)	1643
EcoRI	GAATTC	3 cut(s)	559, 1195, 2071
EcoRII	CCWGG	2 cut(s)	1647, 2145
EcoRV	GATATC	1 cut(s)	1141
EcoT22I	ATGCAT	2 cut(s)	1456, 3134
EcoT38I	GRGCYC	1 cut(s)	1057
Esp3I	CGTCTC	2 cut(s)	277, 308
FaqI	GGGAC	2 cut(s)	1450, 1982
FauI	CCCGC	4 cut(s)	164, 1156, 2245, 3183
FbaI	TGATCA	1 cut(s)	2740
FblI	GTMKAC	2 cut(s)	371, 2128
Fnu4HI	GCNGC	7 cut(s)	750, 1411, 2097, 2265, 2699, 2706, 3116
FriOI	GRGCYC	1 cut(s)	1057
Fsp4HI	GCNGC	7 cut(s)	750, 1411, 2097, 2265, 2699, 2706, 3116
FspBI	CTAG	3 cut(s)	807, 870, 1803
GluI	GCNGC	7 cut(s)	750, 1411, 2097, 2265, 2699, 2706, 3116
GsaI	CCCAGC	2 cut(s)	307, 1471
GsuI	CTGGAG	3 cut(s)	329, 1458, 2244
HaeIII	GGCC	8 cut(s)	9, 93, 828, 1055, 1127, 2192, 2629, 3166
HapII	CCGG	1 cut(s)	2788
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	2330
HinfI	GANTC	7 cut(s)	1084, 1502, 1745, 1787, 2467, 3059, 3284
HpaII	CCGG	1 cut(s)	2788
HphI	GGTGA	6 cut(s)	286, 1442, 2756, 2813, 2855, 3053
Hpy166II	GTNNAC	6 cut(s)	119, 372, 500, 1710, 2129, 2553
Hpy188III	TCNNGA	5 cut(s)	2171, 2442, 2603, 3002, 3081
Hpy8I	GTNNAC	6 cut(s)	119, 372, 500, 1710, 2129, 2553
Hpy99I	CGWCG	1 cut(s)	376
HpyCH4IV	ACGT	5 cut(s)	317, 757, 2674, 2986, 3239
HpyF3I	CTNAG	7 cut(s)	128, 967, 1329, 2448, 2582, 2694, 3102
HpySE526I	ACGT	5 cut(s)	317, 757, 2674, 2986, 3239
Ksp22I	TGATCA	1 cut(s)	2740
Kzo9I	GATC	9 cut(s)	37, 336, 424, 529, 630, 1938, 2740, 2870, 3233
LguI	GCTCTTC	1 cut(s)	912
Lsp1109I	GCAGC	6 cut(s)	761, 1422, 2083, 2251, 2710, 3102
MaeI	CTAG	3 cut(s)	807, 870, 1803
MaeII	ACGT	5 cut(s)	317, 757, 2674, 2986, 3239
MaeIII	GTNAC	9 cut(s)	355, 409, 1017, 1609, 1643, 1729, 2434, 2512, 3196
MalI	GATC	9 cut(s)	39, 338, 426, 531, 632, 1940, 2742, 2872, 3235
MboI	GATC	9 cut(s)	37, 336, 424, 529, 630, 1938, 2740, 2870, 3233
MfeI	CAATTG	1 cut(s)	2631
MflI	RGATCY	3 cut(s)	37, 2870, 3233
MhlI	GDGCHC	6 cut(s)	252, 381, 502, 1057, 2562, 2674
MlsI	TGGCCA	1 cut(s)	2192
MluNI	TGGCCA	1 cut(s)	2192
MlyI	GAGTC	2 cut(s)	1078, 1496
MmeI	TCCRAC	4 cut(s)	310, 439, 690, 2289
Mox20I	TGGCCA	1 cut(s)	2192
Mph1103I	ATGCAT	2 cut(s)	1456, 3134
MroXI	GAANNNNTTC	2 cut(s)	855, 921
MscI	TGGCCA	1 cut(s)	2192
MslI	CAYNNNNRTG	5 cut(s)	1476, 1517, 2529, 2565, 3003
Msp20I	TGGCCA	1 cut(s)	2192
MspA1I	CMGCKG	4 cut(s)	307, 971, 2087, 2264
MspCI	CTTAAG	1 cut(s)	2411
MspI	CCGG	1 cut(s)	2788
MspR9I	CCNGG	2 cut(s)	1649, 2147
MunI	CAATTG	1 cut(s)	2631
Mva1269I	GAATGC	1 cut(s)	1226
MvaI	CCWGG	2 cut(s)	1649, 2147
NdeII	GATC	9 cut(s)	37, 336, 424, 529, 630, 1938, 2740, 2870, 3233
NlaIV	GGNNCC	7 cut(s)	39, 227, 1055, 1078, 1653, 1773, 3099
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	3 cut(s)	355, 409, 2512
NsiI	ATGCAT	2 cut(s)	1456, 3134
NspI	RCATGY	5 cut(s)	488, 1458, 2570, 2705, 3217
NspV	TTCGAA	1 cut(s)	2781
OliI	CACNNNNGTG	1 cut(s)	2529
PaeI	GCATGC	3 cut(s)	488, 2570, 2705
PaqCI	CACCTGC	1 cut(s)	3029
PciSI	GCTCTTC	1 cut(s)	912
PctI	GAATGC	1 cut(s)	1226
PdmI	GAANNNNTTC	2 cut(s)	855, 921
PfeI	GAWTC	5 cut(s)	1745, 1787, 2467, 3059, 3284
PflMI	CCANNNNNTGG	3 cut(s)	34, 2152, 2308
PkrI	GCNGC	7 cut(s)	751, 1412, 2098, 2266, 2700, 2707, 3117
PleI	GAGTC	2 cut(s)	1078, 1496
PpsI	GAGTC	2 cut(s)	1078, 1496
Ppu21I	YACGTR	1 cut(s)	758
Psp6I	CCWGG	2 cut(s)	1647, 2145
PspEI	GGTNACC	1 cut(s)	1643
PspFI	CCCAGC	2 cut(s)	303, 1467
PspGI	CCWGG	2 cut(s)	1647, 2145
PspN4I	GGNNCC	7 cut(s)	39, 227, 1055, 1078, 1653, 1773, 3099
PspOMI	GGGCCC	1 cut(s)	1053
PspPI	GGNCC	4 cut(s)	92, 332, 1053, 1054
PstI	CTGCAG	2 cut(s)	2269, 3120
PstNI	CAGNNNCTG	2 cut(s)	1613, 1733
PsuI	RGATCY	3 cut(s)	37, 2870, 3233
PvuII	CAGCTG	4 cut(s)	307, 971, 2087, 2264
RsaI	GTAC	9 cut(s)	13, 256, 942, 975, 1606, 1726, 2378, 2829, 2955
RsaNI	GTAC	9 cut(s)	12, 255, 941, 974, 1605, 1725, 2377, 2828, 2954
RseI	CAYNNNNRTG	5 cut(s)	1476, 1517, 2529, 2565, 3003
Rsr2I	CGGWCCG	1 cut(s)	332
RsrII	CGGWCCG	1 cut(s)	332
SalI	GTCGAC	1 cut(s)	370
SapI	GCTCTTC	1 cut(s)	912
SatI	GCNGC	7 cut(s)	750, 1411, 2097, 2265, 2699, 2706, 3116
Sau3AI	GATC	9 cut(s)	37, 336, 424, 529, 630, 1938, 2740, 2870, 3233
Sau96I	GGNCC	4 cut(s)	92, 332, 1053, 1054
ScaI	AGTACT	1 cut(s)	2955
SchI	GAGTC	2 cut(s)	1078, 1496
ScrFI	CCNGG	2 cut(s)	1649, 2147
SduI	GDGCHC	6 cut(s)	252, 381, 502, 1057, 2562, 2674
SfcI	CTRYAG	2 cut(s)	2265, 3116
SfuI	TTCGAA	1 cut(s)	2781
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	5 cut(s)	1476, 1517, 2529, 2565, 3003
SmlI	CTYRAG	3 cut(s)	2045, 2120, 2411
SmoI	CTYRAG	3 cut(s)	2045, 2120, 2411
SpeI	ACTAGT	1 cut(s)	1802
SphI	GCATGC	3 cut(s)	488, 2570, 2705
SspMI	CTAG	3 cut(s)	807, 870, 1803
StyD4I	CCNGG	2 cut(s)	1647, 2145
TaiI	ACGT	5 cut(s)	320, 760, 2677, 2989, 3242
TaqI	TCGA	4 cut(s)	371, 466, 2470, 2781
TaqII	GACCGA	1 cut(s)	349
TatI	WGTACW	4 cut(s)	940, 973, 2376, 2953
TauI	GCSGC	1 cut(s)	2708
TfiI	GAWTC	5 cut(s)	1745, 1787, 2467, 3059, 3284
TseFI	GTSAC	3 cut(s)	355, 409, 2512
TseI	GCWGC	6 cut(s)	749, 1410, 2096, 2264, 2698, 3115
Tsp45I	GTSAC	3 cut(s)	355, 409, 2512
TspGWI	ACGGA	2 cut(s)	389, 1296
Van91I	CCANNNNNTGG	3 cut(s)	34, 2152, 2308
Vha464I	CTTAAG	1 cut(s)	2411
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	6 cut(s)	559, 1195, 1235, 2071, 2344, 3253
XceI	RCATGY	5 cut(s)	488, 1458, 2570, 2705, 3217
XcmI	CCANNNNNNNNNTGG	2 cut(s)	304, 1475
XmiI	GTMKAC	2 cut(s)	371, 2128
XmnI	GAANNNNTTC	2 cut(s)	855, 921
XspI	CTAG	3 cut(s)	807, 870, 1803
ZrmI	AGTACT	1 cut(s)	2955
Zsp2I	ATGCAT	2 cut(s)	1456, 3134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.