Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Reverse (-)

10405103 .. 10422320

Gene Structure 17218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1059700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3024 bp

ATGGGGAAGAAGAAAAGCAAAGATGGCGATGGCGGCCGACCGAGAACCGAAAGCGAGCACTCCCCCTCCACTATCTTCGTCTCCAACCTCCCCTTTTCTTTCACCAAATCTCAGCTGGAAGAGACGTTCAGCGACATTGGACCGATTAGGAGGTGCTTTTTGGTTATGAAGAAGGGGTCAACTGAGCACCATGGTTTTGGTTTTGTTCAATTTGCTGTAACAGAAGATGCTAATCGTGCTGTTGAGCTGAAGAATGGTTTGTCCATTGGAGGTCGAAAAATAGCAGCTAAACATGCCATGCATCGTGCTCCGCTTGAACAACGAAGGCCAAAGACTAATCAAGGAACTGACGTGGAAGAGACTGTGAAGACAGAAAATGACAAAGACGGTGACAATTCCCAAGGGGAAAAGGATGCTTCAAAATTGCAGGAAAGAGTTGTTACTTTGGAAAAAAATACAAAGAAACCTGTGAAGACTAGAAAAGCAGCAGCACTAAGTAATGTTCAAGTGGCAAAAGTGGGTGGTTCAGAAAAGCAGAGGGTTGCCAGAACTGTTATATTCGGTGGTCTTCTTAATGCTGGTATGGCAGAAGATGTTCATCGCAAAGCTAGGGAGATTGGGGACGTATGTTCCATCACTTATCCTCTTCCCAAAGAAGAGCTTGAACAACATGGTCTTGTGCAAGATGGATGCAAAATGGATGCTTCATCTGTACTTTATAACAGTGTCAGATCAGCTCATGCTTCTGTTTCTATGTTACATCAAAAAGAAATAAAAGGCGGTATTGTTTGGGCACGTCAGCTGGGTGGGGAGGGTTCCAAGACTCAGAAGTGGAAGCTCATTGTTAGAAATCTTCCTTTCAAGGCCAAAGAGAATGAAATAAATAACATGTTTTCACCGGCTGGGTTTGTCTGGGATGTTTTTATTCCACATAATCCTGAGACAGGGTTATCTAAAGGTTTTGCATTTGTCAAATTCACACGCAAACAGGATGCGGAAAATGCAATAAAAAAGCTAAATGGACAAATGCTTCATAAAAGATCCATAGCTGTTGACTGGGCTGTTTCAAAGAAGATATATGATAGTGGCATTAATGCCCTTGCTTCAGAGGATGGACAAGAGGATGAAAGAGATGGGGAAAGTGATAGTAGCAGTGATGATTTTGAGGATGATGCTGGGGATGTCTGTATAAAGTCCCAGCACAATGATGGAACAGACAATGCTCTAAATGACTCTAACACCATAGAGAAAACAGACATCCCTACTGAAATTAATTTTGAAGAGGAAGCAGACATTGCAAGGAAAGTTCTAAAAAACTTCATCACACCCTCTGGTATAGCAACTCCGGATGATGATTCCACACTGCCGAAAAGGAACAAGGAGACATCTATTGATATATCCGTTGACGAGCCTGAGAAATTATCTTCTGAGATTACAAAAGCATCAGAGGTTGATAAGCCTGGAAAGAAAAGCAAGACCATGGCATCAAATCTTATTGATGAATCTTTTGATGAGCCTAATTACTCATCTCTTGAGACTGCAAAAGCATCAGACGTTACTGAGCCTGGAAAGTTAAGTAAAAGCGTGGCATCAAATCTTGAACAGGCAGACGAAGGAGAAGATTTGCATAGAACAATTTTCATAAGCAATCTTCCTTTTGAGATCACTAATGAAGATGTCAAACAAAGGTTTTCCACCTTTGGGAAAGTTGACTCTTTTGTCCCAGTCCTTCATCCAGTCACCAAGCGACCCAAAGGATCTGGCTTTCTCAGGTTTAAAACAAAAGATGGAGCTAGTTCTGCCGTTTCAGCTGGGAATGCGGAATCTGGCTCGGGAATTACTCTGAAAGGTAGACAATTAACAGTGTTGCAGGCTTTGGATAAAAAATCGGCTCATGATAAGGAATTAAATGTGGCCAAGAAAGAGGACCTAGACCACCGCAATCTCTATCTAGCAAAGGAAGGTCTTATTCTTGAGGGAACTCCAGCTGCAAAAGGGGTTTCAGCTAGTGATATGTTGAAACGCCAAATGGCAGAAAGAAGCAAGATGTCGAAACTTCAATCCCCAAATTTCCATGTTTCCAAGACGAGAATAGTTATAAAAAATTTGCTGAAGTCCATGAATGAAAAGGAACTAAAAAGACTTTGTATTGATGCAGTCACCTCACGAGCTACAAAACAAAAACCTGTTATTCGACAGATAAAGTTCTTGGAGGATGTGAAGAAAGGAAAGCTTAACACAAAGAATCACTCTCGTGGAGCTGCTTTCGTTGAGTTTACAGAGCATCAGCATGCGCTTGTGGCCCTCAGAGTTCTGAACAACAATCCCGAAACTTTTGGTCCCGAGCATCGCCCAATTGTGGAGTTCGCACTGGATAATGTCCAGAAGTTGAAACTACGAAATGCTAAGATTCAAGGGCAGCAGAATGCAGCTCGTCGTAATCCAGGTGTACAGCAAAAGGATGGCTCAAATAGACCAGATGCCGATCCAAGCCAGAAGTTCAACAAACGGAAACAAAGTGGTGACAAGCAAAATCTGGATGAATCAGTACCAAATAAAGAAGATGAAGTGGAAAACGGGGTTGGTGATGGAACTGCCACTGACCGAGAGAGAGCTTCTAAGAGGCATAAGAAGGGTCCATTCGGAAAGGAAAAGAAGATCTCATCAACAAAAGTACCAGGAGGCGCAACAGACAATCATCAAGATGGCGTGAAGCCTGGTCGTGGGGGATCATTCGAACGTGAATCCATGGCCAATGGTGCACAAACATCAAAATCTATGGGAAAGGCAAATGTAGGAGCTCAAAAGAGGAAGCTGCAAGCGCAGAAAGAGGTGGAGGGGGGAGAGACTGAAACGAGGAGAAAAAGGCCAAAGAAAAATAAAGACCCATTAGGGCGGGACGTTGTGGATAAACTGGACATGCTGATCGAACAATATAGATCCAAGTACTCACAACGTAGCTCCGCCCAAACCGATGGCGAAAAGCAAGGTTCCAAGAAGCTTAGAAAATGGTTCCAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

1008

Amino Acids

111.24

Weight (kDa)

9.33

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	25 - 94	1.7e-17	RNA recognition motif
RRM_1	PF00076	280 - 349	9.6e-18	RNA recognition motif
RRM_1	PF00076	546 - 606	8.7e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	720, 2099
AasI	GACNNNNNNGTC	1 cut(s)	1718
AccI	GTMKAC	1 cut(s)	1852
AccIII	TCCGGA	1 cut(s)	1345
AciI	CCGC	8 cut(s)	33, 311, 780, 995, 1820, 1939, 2896, 2964
AclWI	GGATC	5 cut(s)	1035, 1765, 2480, 2737, 2934
AcoI	YGGCCR	3 cut(s)	34, 1914, 2751
AcsI	RAATTY	3 cut(s)	974, 2068, 2104
AcuI	CTGAAG	3 cut(s)	269, 1089, 2132
AfaI	GTAC	5 cut(s)	714, 2451, 2550, 2676, 2948
AfiI	CCNNNNNNNGG	4 cut(s)	944, 1701, 2359, 2723
AflIII	ACRYGT	1 cut(s)	888
AjiI	CACGTC	2 cut(s)	352, 797
AjnI	CCWGG	5 cut(s)	1459, 1564, 2443, 2677, 2716
AjuI	GAANNNNNNNTTGG	2 cut(s)	2565, 2597
AleI	CACNNNNGTG	1 cut(s)	2253
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
Alw21I	GWGCWC	5 cut(s)	60, 189, 310, 2764, 2803
Alw26I	GTCTC	7 cut(s)	85, 116, 353, 935, 1376, 1529, 2840
Alw44I	GTGCAC	1 cut(s)	2760
AlwI	GGATC	5 cut(s)	1035, 1765, 2480, 2737, 2934
Ama87I	CYCGRG	2 cut(s)	1831, 2342
Aor13HI	TCCGGA	1 cut(s)	1345
AoxI	GGCC	7 cut(s)	34, 326, 864, 1914, 2301, 2751, 2867
ApaLI	GTGCAC	1 cut(s)	2760
ApeKI	GCWGC	8 cut(s)	284, 485, 488, 1988, 2261, 2419, 2429, 2815
ApoI	RAATTY	3 cut(s)	974, 2068, 2104
AseI	ATTAAT	2 cut(s)	1092, 1272
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	3 cut(s)	2296, 2687, 2824
AspS9I	GGNCC	5 cut(s)	140, 1927, 2302, 2339, 2636
AsuHPI	GGTGA	7 cut(s)	94, 401, 888, 1732, 2152, 2534, 2597
AsuII	TTCGAA	1 cut(s)	2736
AvaI	CYCGRG	2 cut(s)	1831, 2342
AvaII	GGWCC	4 cut(s)	140, 1927, 2339, 2636
BaeGI	GKGCMC	2 cut(s)	796, 2764
BaeI	ACNNNNGTAYC	2 cut(s)	2658, 2691
BalI	TGGCCA	2 cut(s)	1916, 2753
BanII	GRGCYC	1 cut(s)	2803
BauI	CACGAG	2 cut(s)	2166, 2253
BbsI	GAAGAC	3 cut(s)	374, 479, 560
Bbv12I	GWGCWC	5 cut(s)	60, 189, 310, 2764, 2803
BbvI	GCAGC	8 cut(s)	296, 497, 500, 1975, 2248, 2431, 2441, 2802
BceAI	ACGGC	1 cut(s)	1787
BciT130I	CCWGG	5 cut(s)	1461, 1566, 2445, 2679, 2718
BcoDI	GTCTC	7 cut(s)	85, 116, 353, 935, 1376, 1529, 2840
BfaI	CTAG	6 cut(s)	477, 609, 1794, 1931, 1952, 2007
BglII	AGATCT	1 cut(s)	2658
BisI	GCNGC	9 cut(s)	34, 285, 486, 489, 1989, 2262, 2420, 2430, 2816
BlsI	GCNGC	9 cut(s)	35, 286, 487, 490, 1990, 2263, 2421, 2431, 2817
BmcAI	AGTACT	1 cut(s)	2948
Bme1390I	CCNGG	5 cut(s)	1461, 1566, 2445, 2679, 2718
Bme18I	GGWCC	4 cut(s)	140, 1927, 2339, 2636
BmeT110I	CYCGRG	2 cut(s)	1831, 2342
BmgBI	CACGTC	2 cut(s)	352, 797
BmgT120I	GGNCC	5 cut(s)	140, 1927, 2302, 2339, 2636
BmiI	GGNNCC	5 cut(s)	817, 2341, 2637, 2992, 3014
BmrFI	CCNGG	5 cut(s)	1461, 1566, 2445, 2679, 2718
BmrI	ACTGGG	2 cut(s)	1066, 1718
BmuI	ACTGGG	2 cut(s)	1066, 1718
BpiI	GAAGAC	3 cut(s)	374, 479, 560
BpmI	CTGGAG	1 cut(s)	1968
Bpu14I	TTCGAA	1 cut(s)	2736
BpuEI	CTTGAG	2 cut(s)	1553, 1994
BsaBI	GATNNNNATC	3 cut(s)	231, 597, 2484
BsaJI	CCNNGG	4 cut(s)	190, 400, 1479, 2748
BsaWI	WCCGGW	1 cut(s)	1345
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	4 cut(s)	944, 1701, 2359, 2723
Bse118I	RCCGGY	1 cut(s)	898
Bse1I	ACTGG	5 cut(s)	1061, 1724, 1736, 2376, 2919
Bse3DI	GCAATG	1 cut(s)	1293
Bse8I	GATNNNNATC	3 cut(s)	231, 597, 2484
BseAI	TCCGGA	1 cut(s)	1345
BseBI	CCWGG	5 cut(s)	1461, 1566, 2445, 2679, 2718
BseDI	CCNNGG	4 cut(s)	190, 400, 1479, 2748
BseJI	GATNNNNATC	3 cut(s)	231, 597, 2484
BseLI	CCNNNNNNNGG	4 cut(s)	944, 1701, 2359, 2723
BseMI	GCAATG	1 cut(s)	1293
BseMII	CTCAG	9 cut(s)	125, 174, 839, 930, 1404, 1419, 1551, 1783, 2320
BseNI	ACTGG	5 cut(s)	1061, 1724, 1736, 2376, 2919
BseRI	GAGGAG	1 cut(s)	2872
BseSI	GKGCMC	2 cut(s)	796, 2764
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	8 cut(s)	296, 497, 500, 1975, 2248, 2431, 2441, 2802
BseYI	CCCAGC	5 cut(s)	802, 902, 1175, 1197, 1811
Bsh1285I	CGRYCG	2 cut(s)	37, 41
BshFI	GGCC	7 cut(s)	36, 328, 866, 1916, 2303, 2753, 2869
BsiEI	CGRYCG	2 cut(s)	37, 41
BsiHKAI	GWGCWC	5 cut(s)	60, 189, 310, 2764, 2803
BsiHKCI	CYCGRG	2 cut(s)	1831, 2342
BsiSI	CCGG	2 cut(s)	899, 1346
BslFI	GGGAC	5 cut(s)	635, 1180, 1706, 2325, 2912
BslI	CCNNNNNNNGG	4 cut(s)	944, 1701, 2359, 2723
BsmAI	GTCTC	7 cut(s)	85, 116, 353, 935, 1376, 1529, 2840
BsmBI	CGTCTC	2 cut(s)	85, 116
BsmFI	GGGAC	5 cut(s)	635, 1180, 1706, 2325, 2912
BsmI	GAATGC	2 cut(s)	1822, 2431
BsnI	GGCC	7 cut(s)	36, 328, 866, 1916, 2303, 2753, 2869
BsoBI	CYCGRG	2 cut(s)	1831, 2342
Bsp119I	TTCGAA	1 cut(s)	2736
Bsp1286I	GDGCHC	6 cut(s)	60, 189, 310, 796, 2764, 2803
Bsp13I	TCCGGA	1 cut(s)	1345
Bsp1407I	TGTACA	1 cut(s)	2449
Bsp143I	GATC	9 cut(s)	731, 1040, 1662, 1757, 2485, 2658, 2729, 2925, 2939
Bsp19I	CCATGG	3 cut(s)	190, 1479, 2748
BspACI	CCGC	8 cut(s)	33, 311, 780, 995, 1820, 1939, 2896, 2964
BspANI	GGCC	7 cut(s)	36, 328, 866, 1916, 2303, 2753, 2869
BspCNI	CTCAG	9 cut(s)	124, 175, 838, 931, 1405, 1420, 1552, 1782, 2319
BspEI	TCCGGA	1 cut(s)	1345
BspHI	TCATGA	1 cut(s)	1894
BspLI	GGNNCC	5 cut(s)	817, 2341, 2637, 2992, 3014
BspPI	GGATC	5 cut(s)	1035, 1765, 2480, 2737, 2934
BspQI	GCTCTTC	1 cut(s)	651
BspT104I	TTCGAA	1 cut(s)	2736
BsrDI	GCAATG	1 cut(s)	1293
BsrFI	RCCGGY	1 cut(s)	898
BsrGI	TGTACA	1 cut(s)	2449
BsrI	ACTGG	5 cut(s)	1061, 1724, 1736, 2376, 2919
BssAI	RCCGGY	1 cut(s)	898
BssECI	CCNNGG	4 cut(s)	190, 400, 1479, 2748
BssMI	GATC	9 cut(s)	731, 1040, 1662, 1757, 2485, 2658, 2729, 2925, 2939
BssSI	CACGAG	2 cut(s)	2166, 2253
BssT1I	CCWWGG	4 cut(s)	190, 400, 1479, 2748
Bst2BI	CACGAG	2 cut(s)	2166, 2253
Bst2UI	CCWGG	5 cut(s)	1461, 1566, 2445, 2679, 2718
Bst4CI	ACNGT	5 cut(s)	364, 389, 553, 725, 1864
Bst6I	CTCTTC	5 cut(s)	114, 351, 651, 651, 1275
BstAPI	GCANNNNNTGC	1 cut(s)	1295
BstAUI	TGTACA	1 cut(s)	2449
BstBI	TTCGAA	1 cut(s)	2736
BstC8I	GCNNGC	4 cut(s)	56, 1872, 2292, 2820
BstDSI	CCRYGG	3 cut(s)	190, 1479, 2748
BstENI	CCTNNNNNAGG	1 cut(s)	942
BstHHI	GCGC	3 cut(s)	2296, 2687, 2824
BstKTI	GATC	9 cut(s)	734, 1043, 1665, 1760, 2488, 2661, 2732, 2928, 2942
BstMAI	GTCTC	7 cut(s)	85, 116, 353, 935, 1376, 1529, 2840
BstMBI	GATC	9 cut(s)	731, 1040, 1662, 1757, 2485, 2658, 2729, 2925, 2939
BstMCI	CGRYCG	2 cut(s)	37, 41
BstNI	CCWGG	5 cut(s)	1461, 1566, 2445, 2679, 2718
BstNSI	RCATGY	4 cut(s)	296, 892, 2294, 2923
BstSCI	CCNGG	5 cut(s)	1459, 1564, 2443, 2677, 2716
BstSLI	GKGCMC	2 cut(s)	796, 2764
BstV1I	GCAGC	8 cut(s)	296, 497, 500, 1975, 2248, 2431, 2441, 2802
BstV2I	GAAGAC	3 cut(s)	374, 479, 560
BstX2I	RGATCY	4 cut(s)	1040, 1757, 2658, 2939
BstXI	CCANNNNNNTGG	2 cut(s)	197, 2975
BstYI	RGATCY	4 cut(s)	1040, 1757, 2658, 2939
BstZI	CGGCCG	1 cut(s)	34
BsuRI	GGCC	7 cut(s)	36, 328, 866, 1916, 2303, 2753, 2869
BtgI	CCRYGG	3 cut(s)	190, 1479, 2748
BtgZI	GCGATG	3 cut(s)	42, 584, 2333
BtrI	CACGTC	2 cut(s)	352, 797
BtsI	GCAGTG	2 cut(s)	1159, 1361
BtsIMutI	CAGTG	6 cut(s)	730, 1159, 1361, 1869, 2369, 2598
Cac8I	GCNNGC	4 cut(s)	56, 1872, 2292, 2820
CciI	TCATGA	1 cut(s)	1894
CfoI	GCGC	3 cut(s)	2296, 2687, 2824
Cfr10I	RCCGGY	1 cut(s)	898
Cfr13I	GGNCC	5 cut(s)	140, 1927, 2302, 2339, 2636
Csp6I	GTAC	5 cut(s)	713, 2450, 2549, 2675, 2947
CviQI	GTAC	5 cut(s)	713, 2450, 2549, 2675, 2947
DpnI	GATC	9 cut(s)	733, 1042, 1664, 1759, 2487, 2660, 2731, 2927, 2941
DpnII	GATC	9 cut(s)	731, 1040, 1662, 1757, 2485, 2658, 2729, 2925, 2939
DraI	TTTAAA	1 cut(s)	1777
DrdI	GACNNNNNNGTC	1 cut(s)	1718
DseDI	GACNNNNNNGTC	1 cut(s)	1718
EaeI	YGGCCR	3 cut(s)	34, 1914, 2751
EagI	CGGCCG	1 cut(s)	34
Eam1104I	CTCTTC	5 cut(s)	114, 351, 651, 651, 1275
EarI	CTCTTC	5 cut(s)	114, 351, 651, 651, 1275
EciI	GGCGGA	1 cut(s)	2953
Ecl136II	GAGCTC	1 cut(s)	2801
EclXI	CGGCCG	1 cut(s)	34
Eco130I	CCWWGG	4 cut(s)	190, 400, 1479, 2748
Eco24I	GRGCYC	1 cut(s)	2803
Eco47I	GGWCC	4 cut(s)	140, 1927, 2339, 2636
Eco52I	CGGCCG	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	2801
Eco57I	CTGAAG	3 cut(s)	269, 1089, 2132
Eco88I	CYCGRG	2 cut(s)	1831, 2342
EcoICRI	GAGCTC	1 cut(s)	2801
EcoNI	CCTNNNNNAGG	1 cut(s)	942
EcoO109I	RGGNCCY	1 cut(s)	1927
EcoRII	CCWGG	5 cut(s)	1459, 1564, 2443, 2677, 2716
EcoT14I	CCWWGG	4 cut(s)	190, 400, 1479, 2748
EcoT22I	ATGCAT	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	2803
ErhI	CCWWGG	4 cut(s)	190, 400, 1479, 2748
Esp3I	CGTCTC	2 cut(s)	85, 116
FalI	AAGNNNNNCTT	4 cut(s)	645, 677, 2217, 2249
FaqI	GGGAC	5 cut(s)	635, 1180, 1706, 2325, 2912
FauI	CCCGC	1 cut(s)	2889
FblI	GTMKAC	1 cut(s)	1852
Fnu4HI	GCNGC	9 cut(s)	34, 285, 486, 489, 1989, 2262, 2420, 2430, 2816
FriOI	GRGCYC	1 cut(s)	2803
Fsp4HI	GCNGC	9 cut(s)	34, 285, 486, 489, 1989, 2262, 2420, 2430, 2816
FspBI	CTAG	6 cut(s)	477, 609, 1794, 1931, 1952, 2007
GlaI	GCGC	3 cut(s)	2295, 2686, 2823
GluI	GCNGC	9 cut(s)	34, 285, 486, 489, 1989, 2262, 2420, 2430, 2816
GsaI	CCCAGC	5 cut(s)	806, 906, 1179, 1201, 1815
GsuI	CTGGAG	1 cut(s)	1968
HaeIII	GGCC	7 cut(s)	36, 328, 866, 1916, 2303, 2753, 2869
HapII	CCGG	2 cut(s)	899, 1346
HhaI	GCGC	3 cut(s)	2296, 2687, 2824
Hin6I	GCGC	3 cut(s)	2294, 2685, 2822
HinP1I	GCGC	3 cut(s)	2294, 2685, 2822
HincII	GTYRAC	4 cut(s)	180, 1054, 1405, 1711
HindII	GTYRAC	4 cut(s)	180, 1054, 1405, 1711
HindIII	AAGCTT	2 cut(s)	2231, 2999
HpaII	CCGG	2 cut(s)	899, 1346
HphI	GGTGA	7 cut(s)	94, 401, 888, 1732, 2152, 2534, 2597
Hpy166II	GTNNAC	8 cut(s)	180, 1054, 1405, 1711, 1853, 2277, 2450, 2762
Hpy8I	GTNNAC	8 cut(s)	180, 1054, 1405, 1711, 1853, 2277, 2450, 2762
Hpy99I	CGWCG	1 cut(s)	2439
HpyAV	CCTTC	6 cut(s)	166, 318, 1607, 1739, 1955, 2626
HpyCH4III	ACNGT	5 cut(s)	364, 389, 553, 725, 1864
HpyCH4IV	ACGT	8 cut(s)	125, 351, 624, 796, 1554, 2740, 2901, 2956
HpySE526I	ACGT	8 cut(s)	125, 351, 624, 796, 1554, 2740, 2901, 2956
HspAI	GCGC	3 cut(s)	2294, 2685, 2822
Kpn2I	TCCGGA	1 cut(s)	1345
Kzo9I	GATC	9 cut(s)	731, 1040, 1662, 1757, 2485, 2658, 2729, 2925, 2939
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	5 cut(s)	313, 1790, 2258, 2798, 2966
Lsp1109I	GCAGC	8 cut(s)	296, 497, 500, 1975, 2248, 2431, 2441, 2802
MaeI	CTAG	6 cut(s)	477, 609, 1794, 1931, 1952, 2007
MaeII	ACGT	8 cut(s)	125, 351, 624, 796, 1554, 2740, 2901, 2956
MaeIII	GTNAC	8 cut(s)	217, 389, 439, 756, 1555, 1738, 2158, 2522
MalI	GATC	9 cut(s)	733, 1042, 1664, 1759, 2487, 2660, 2731, 2927, 2941
MboI	GATC	9 cut(s)	731, 1040, 1662, 1757, 2485, 2658, 2729, 2925, 2939
MfeI	CAATTG	1 cut(s)	2355
MflI	RGATCY	4 cut(s)	1040, 1757, 2658, 2939
MhlI	GDGCHC	6 cut(s)	60, 189, 310, 796, 2764, 2803
MlsI	TGGCCA	2 cut(s)	1916, 2753
MluNI	TGGCCA	2 cut(s)	1916, 2753
MlyI	GAGTC	3 cut(s)	817, 1226, 1706
MmeI	TCCRAC	1 cut(s)	108
Mox20I	TGGCCA	2 cut(s)	1916, 2753
Mph1103I	ATGCAT	1 cut(s)	303
MroI	TCCGGA	1 cut(s)	1345
MroXI	GAANNNNTTC	1 cut(s)	594
MscI	TGGCCA	2 cut(s)	1916, 2753
MseI	TTAA	8 cut(s)	573, 1092, 1272, 1574, 1776, 1859, 1907, 2235
MslI	CAYNNNNRTG	4 cut(s)	1206, 2253, 2289, 2703
Msp20I	TGGCCA	2 cut(s)	1916, 2753
MspA1I	CMGCKG	4 cut(s)	115, 802, 1811, 1988
MspI	CCGG	2 cut(s)	899, 1346
MspR9I	CCNGG	5 cut(s)	1461, 1566, 2445, 2679, 2718
MunI	CAATTG	1 cut(s)	2355
Mva1269I	GAATGC	2 cut(s)	1822, 2431
MvaI	CCWGG	5 cut(s)	1461, 1566, 2445, 2679, 2718
NcoI	CCATGG	3 cut(s)	190, 1479, 2748
NdeII	GATC	9 cut(s)	731, 1040, 1662, 1757, 2485, 2658, 2729, 2925, 2939
NlaIV	GGNNCC	5 cut(s)	817, 2341, 2637, 2992, 3014
NmuCI	GTSAC	4 cut(s)	389, 1738, 2158, 2522
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	4 cut(s)	296, 892, 2294, 2923
NspV	TTCGAA	1 cut(s)	2736
OliI	CACNNNNGTG	1 cut(s)	2253
PaeI	GCATGC	1 cut(s)	2294
PagI	TCATGA	1 cut(s)	1894
PciI	ACATGT	1 cut(s)	888
PciSI	GCTCTTC	1 cut(s)	651
PctI	GAATGC	2 cut(s)	1822, 2431
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	7 cut(s)	1355, 1502, 1823, 2245, 2410, 2543, 2744
PkrI	GCNGC	9 cut(s)	35, 286, 487, 490, 1990, 2263, 2421, 2431, 2817
PleI	GAGTC	3 cut(s)	817, 1226, 1706
PpsI	GAGTC	3 cut(s)	817, 1226, 1706
PpuMI	RGGWCCY	1 cut(s)	1927
PscI	ACATGT	1 cut(s)	888
PshBI	ATTAAT	2 cut(s)	1092, 1272
PsiI	TTATAA	2 cut(s)	720, 2099
Psp124BI	GAGCTC	1 cut(s)	2803
Psp5II	RGGWCCY	1 cut(s)	1927
Psp6I	CCWGG	5 cut(s)	1459, 1564, 2443, 2677, 2716
PspFI	CCCAGC	5 cut(s)	802, 902, 1175, 1197, 1811
PspGI	CCWGG	5 cut(s)	1459, 1564, 2443, 2677, 2716
PspN4I	GGNNCC	5 cut(s)	817, 2341, 2637, 2992, 3014
PspPI	GGNCC	5 cut(s)	140, 1927, 2302, 2339, 2636
PspPPI	RGGWCCY	1 cut(s)	1927
PsuI	RGATCY	4 cut(s)	1040, 1757, 2658, 2939
PvuII	CAGCTG	4 cut(s)	115, 802, 1811, 1988
RsaI	GTAC	5 cut(s)	714, 2451, 2550, 2676, 2948
RsaNI	GTAC	5 cut(s)	713, 2450, 2549, 2675, 2947
RseI	CAYNNNNRTG	4 cut(s)	1206, 2253, 2289, 2703
SacI	GAGCTC	1 cut(s)	2803
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	8 cut(s)	573, 1092, 1272, 1574, 1776, 1859, 1907, 2235
SatI	GCNGC	9 cut(s)	34, 285, 486, 489, 1989, 2262, 2420, 2430, 2816
Sau3AI	GATC	9 cut(s)	731, 1040, 1662, 1757, 2485, 2658, 2729, 2925, 2939
Sau96I	GGNCC	5 cut(s)	140, 1927, 2302, 2339, 2636
ScaI	AGTACT	1 cut(s)	2948
SchI	GAGTC	3 cut(s)	817, 1226, 1706
ScrFI	CCNGG	5 cut(s)	1461, 1566, 2445, 2679, 2718
SduI	GDGCHC	6 cut(s)	60, 189, 310, 796, 2764, 2803
SfuI	TTCGAA	1 cut(s)	2736
SinI	GGWCC	4 cut(s)	140, 1927, 2339, 2636
SmiMI	CAYNNNNRTG	4 cut(s)	1206, 2253, 2289, 2703
SmlI	CTYRAG	2 cut(s)	1532, 1973
SmoI	CTYRAG	2 cut(s)	1532, 1973
SphI	GCATGC	1 cut(s)	2294
SsiI	CCGC	8 cut(s)	33, 311, 780, 995, 1820, 1939, 2896, 2964
SspMI	CTAG	6 cut(s)	477, 609, 1794, 1931, 1952, 2007
SstI	GAGCTC	1 cut(s)	2803
StyD4I	CCNGG	5 cut(s)	1459, 1564, 2443, 2677, 2716
StyI	CCWWGG	4 cut(s)	190, 400, 1479, 2748
TaaI	ACNGT	5 cut(s)	364, 389, 553, 725, 1864
TaiI	ACGT	8 cut(s)	128, 354, 627, 799, 1557, 2743, 2904, 2959
TaqI	TCGA	5 cut(s)	274, 2051, 2194, 2736, 2928
TaqII	GACCGA	3 cut(s)	55, 157, 2619
TatI	WGTACW	3 cut(s)	712, 2449, 2946
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	7 cut(s)	1355, 1502, 1823, 2245, 2410, 2543, 2744
Tru1I	TTAA	8 cut(s)	573, 1092, 1272, 1574, 1776, 1859, 1907, 2235
Tru9I	TTAA	8 cut(s)	573, 1092, 1272, 1574, 1776, 1859, 1907, 2235
TscAI	CASTG	6 cut(s)	730, 1159, 1368, 1869, 2376, 2605
TseFI	GTSAC	4 cut(s)	389, 1738, 2158, 2522
TseI	GCWGC	8 cut(s)	284, 485, 488, 1988, 2261, 2419, 2429, 2815
Tsp45I	GTSAC	4 cut(s)	389, 1738, 2158, 2522
TspGWI	ACGGA	2 cut(s)	1390, 2524
TspRI	CASTG	6 cut(s)	730, 1159, 1368, 1869, 2376, 2605
VneI	GTGCAC	1 cut(s)	2760
VpaK11BI	GGWCC	4 cut(s)	140, 1927, 2339, 2636
VspI	ATTAAT	2 cut(s)	1092, 1272
XagI	CCTNNNNNAGG	1 cut(s)	942
XapI	RAATTY	3 cut(s)	974, 2068, 2104
XceI	RCATGY	4 cut(s)	296, 892, 2294, 2923
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 1205
XmiI	GTMKAC	1 cut(s)	1852
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	6 cut(s)	477, 609, 1794, 1931, 1952, 2007
ZrmI	AGTACT	1 cut(s)	2948
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.