Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Reverse (-)

47466163 .. 47475111

Gene Structure 8949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014114

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3105 bp

ATGGGGAAGAAGAAAAGCAAAGATGGTAGCCATCCCAGAACCGAAACCGAGCACTGTACCTCCACCGTCTTCGTCTCCAATTTGCCTTACTCTTTCACCAATTCCCAGCTGGAGGAGACGTTCAGTGAAGTCGGACCGATCAGGCGGTGCTTTATGGTCACAAAAAAGGGGTCGACGGAGCACCGTGGTTTTGGCTTTGTTCAATTTGCTGTCACAACCGATGCTGATCGCTCCGTTGAGCTGAAGAATGGTGTGTCTGTTGGAGGTCGAAAGATTGCTGTTAAGCATGCCATGCATCGTGCACCCTTTGAACAACGAAGATCAAAGAAAGATCAAGGTTCTGAATTGGATGAAACTATGAATTCAAAAAATGGCAAGGATGGAGACAATCCTAAAGAGGGAAATGGTGCTTCAAACTTGGATATAAGAGAGATCAAATTGGATAAGACCATGAAGTCAAAGAATGACAAGGATGCTGGCAATTTGAAAAAGGAAAAGGATGTTTCAAAGTTGGAGGAAAAAGAAAAAACTGTGAAACCCAGAAAACCAGTAGCACCATGTAAAGATGTAGTGGCAAAAGTGGGAGGTTCTGAAAAGCAGAGGGTTGCTAGGACTGTTATATTTGGTGGCCTTCTCAATGCTGGTATGGCGGAAGATGTTCATCGCCAAGCTAGGGAGGTTGGCGATGTGTGTTCTATAACTTATCCTTTTCCCAAAGAAGAGCTTCAACAACATGGTCTTGTACAAGATGGATGCAAAATGGATGCCTCAGCTGTACTTTACAGCAGTGTTAAATCAGCTCATGCTTCTGTTGCAATGTTACACCAAAAGGAGATAAAAGGAGGAATTGTTTGGGCCCGTCAGCTGGGTGGGGAGGGTTCCAAGACTCGGAAGTGGAAGCTCATTGTCAGAAATCTTCCTTTCAAGGCCAAAGTCAGTGATATCAAAGATATGTTTTCATCTGCGGGATTTGTCTGGGAGGTTTATATACCACAGAATTCTGATACAGGGTTGTCTAAAGGATTTGCATTCGTCAAATTCACACGCAGACAAGATGCGGAAAATGCAATAAAAAAGTTCAATGGACAAAAACTTCTTAAAAGACCAATAGCTGTGGACTGGGCTGTTCCTAAGCAGATATATGGTAGTGGCAATGACACCCTTGCTTCAGAAGATGGAGAAAAGGGCGGAAGAGATGGGGGAAATGATAGCAGCAGTGATGATTTTGAGGGTGATGCTGGAGATGCATGTAAAAAGTCCCAGCACCTTGATGGGATTGACAGTGCTTCAGATGACTCCAATACCACAGAGCTGAAAGACATCCCTACTGAAATTGATTTTGAGGAGGAAGCAGACATAGCAAGAAAAGTTCTAAAAAACTTGACCACGCCCTCTGGTACAGTAACTTCTGTTGATAATTCTGCATTGCCCAAAGGTAACAAGGAGCCAACTATTGATTTTGAGGAGGAAGCAGACATTGCAAGAAAAGTTCTAAAAAAGTTTACCACACCCTCTGGTACAGTAACTACTGTTGATGATTCTGCACTGCCCGTAAGCAACAAGGAGCCAACTATTGAAGAATCTGCTAATGAGACGAGTAAGTTATCTTCTGAGACTGCACCTAATAAATTATCTTCTGAAAGTGCCAGTGCATCAGATGTTGCTAAACCACAAACGGAAGAAGTAGATGATTTGCATAGAACAATTTTCATCAGCAACCTTCCTTTTGAGATCACTAATGAAGAAGTCAAACAAAGGTTTTCTGCTTTCGGGCAAGTGCAATCTTTTGTCCCAGTTCTTCATCCACTTACCAAGCGACCAAAAGGAACTGGCTTTCTCAAGTTTAAGACAGTAGATGCAGTGAATTCTGCTGTTTCAGCTGGTAGTGCTGCATCTGGCTTGGGGATTTTTCTCAAGGGTAGACAACTGACAGTCTTCCAGGCTTTGGATAGAAAATCAGCTCATGAGAAGGAAGAAAATATGGCCAAAAAAGAGGACATAGACCACCGCAATCTCTATTTGGCAAAGGAAGGTCTTATTCTTGCGGGAACTCCAGCTGCAGAAGGGGTTTCAGCTAATGATATGTCAAAACGCCAAATGTTGGAGAGGAGCAAGGCGATGAAGCTTAAATCTCCAAATTTTCATGTTTCAAAGACAAGATTAGTTATGTACAATTTGCCAAAGTCCATGACTGAAAAACAGCTTAAGAAACTTTGTATGGATGCTGTTACCTCACGAGCTAAGCTACAAAAACCTGTGATTCGACAGATAAAGTGCTTGAAGGATGTGAAAAAGGGAAAGATTGTTGCAAAGAACCACTCTCGCGGTGTTGCTTTCATTGAGTTTACGGAGCACCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGTTCAGAACATCGGCCAATTGTGGAGTTTGCACTTGATAATGTTCAGAAATTGAGAGCACGTCAGGTATCACAACAAACTCAGCAGCATGCCGATAATGGTAATCAGAAAGAGGGTCGGAAATTTGATCACTCAAATAGAGCAGATGCCCACCCAAGCAAGAAGTTTGAAAACCGGAGAGACAAAGGTGACAAGCGAAAACTGGATGAGGTAGTACCAAATAAAGAGGGTGAAGTGGAAAATAGGGCAAGTGATGGAGCTGCCACTGAAGGGCAGAGATTTCCCAAGAGGCAGAAGAATGGTTCAGATAGAAAGGCAGAAAAGATTTCATCAAAAAAAGTACTGGGAGGCTCATCGGTAGAAGGTTCAAAACGTGAAAGCCATCATCAAGATGGCAGGAAGGCTGGCAGTGGAAGATCGTTTGCAGGTGAAATCAAGGCAGTTGATGCGCTCACATCAATATCTTCGAGAAAGACAAATGTGGAACCTAAGAAGAGGAAGCTGCAGGAGCAAAATTACACGGAGGGAGGAGAAAACATGATGAGGAGAAGGCGGCCAAAGAATAAAGACCCAACAGGGCGGGATGTTACAGATAAACTTGACATGCTGATTGAAAAATATAGATCCACGTTCTCAAATCAGAATTCCTTCCAAAAAGGTGGCGGAAGGCAAGATTCAATTAGAAAATGGATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

1035

Amino Acids

114.39

Weight (kDa)

9.45

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	23 - 92	3e-16	RNA recognition motif
RRM_1	PF00076	301 - 370	6.7e-16	RNA recognition motif
RRM_1	PF00076	569 - 626	9.8e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2822
AasI	GACNNNNNNGTC	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	2822
AccB7I	CCANNNNNTGG	2 cut(s)	1945, 2101
AccI	GTMKAC	2 cut(s)	173, 1921
AccII	CGCG	1 cut(s)	2325
AclWI	GGATC	1 cut(s)	3024
AcoI	YGGCCR	3 cut(s)	1983, 2420, 2960
AcsI	RAATTY	7 cut(s)	361, 997, 1037, 1864, 2137, 2528, 3049
AcuI	CTGAAG	4 cut(s)	263, 1152, 1272, 2694
AfaI	GTAC	8 cut(s)	58, 744, 777, 1399, 1519, 2171, 2622, 2748
AfiI	CCNNNNNNNGG	8 cut(s)	112, 398, 673, 865, 888, 1945, 2101, 2676
AflII	CTTAAG	1 cut(s)	2204
AjiI	CACGTC	1 cut(s)	2468
AjnI	CCWGG	1 cut(s)	1938
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
Alw21I	GWGCWC	5 cut(s)	54, 183, 304, 2355, 2467
Alw26I	GTCTC	6 cut(s)	79, 110, 378, 1586, 1607, 2580
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	3024
AoxI	GGCC	6 cut(s)	628, 855, 927, 1983, 2420, 2960
ApaI	GGGCCC	1 cut(s)	859
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	6 cut(s)	1212, 1889, 2057, 2491, 2666, 2908
ApoI	RAATTY	7 cut(s)	361, 997, 1037, 1864, 2137, 2528, 3049
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	3 cut(s)	657, 723, 3053
AspLEI	GCGC	1 cut(s)	2857
AspS9I	GGNCC	3 cut(s)	134, 855, 856
AsuHPI	GGTGA	5 cut(s)	88, 1244, 2606, 2648, 2846
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	2 cut(s)	304, 859
BalI	TGGCCA	1 cut(s)	1985
BanII	GRGCYC	1 cut(s)	859
BarI	GAAGNNNNNNTAC	4 cut(s)	1390, 1422, 1591, 1623
BauI	CACGAG	1 cut(s)	2235
BbsI	GAAGAC	2 cut(s)	61, 1927
Bbv12I	GWGCWC	5 cut(s)	54, 183, 304, 2355, 2467
BbvCI	CCTCAGC	1 cut(s)	769
BbvI	GCAGC	6 cut(s)	1224, 1876, 2044, 2503, 2653, 2895
BciT130I	CCWGG	1 cut(s)	1940
BclI	TGATCA	1 cut(s)	2533
BcoDI	GTCTC	6 cut(s)	79, 110, 378, 1586, 1607, 2580
BfaI	CTAG	2 cut(s)	609, 672
BfmI	CTRYAG	2 cut(s)	2058, 2909
BfrI	CTTAAG	1 cut(s)	2204
BfuAI	ACCTGC	1 cut(s)	2822
BglI	GCCNNNNNGGC	1 cut(s)	2369
BisI	GCNGC	7 cut(s)	1213, 1890, 2058, 2492, 2667, 2909, 2960
BlpI	GCTNAGC	1 cut(s)	2241
BlsI	GCNGC	7 cut(s)	1214, 1891, 2059, 2493, 2668, 2910, 2961
BmcAI	AGTACT	1 cut(s)	2748
Bme1390I	CCNGG	1 cut(s)	1940
Bme18I	GGWCC	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	2468
BmgT120I	GGNCC	3 cut(s)	134, 855, 856
BmiI	GGNNCC	5 cut(s)	857, 880, 1446, 1566, 2892
BmrFI	CCNGG	1 cut(s)	1940
BmrI	ACTGGG	3 cut(s)	1129, 1787, 2759
BmuI	ACTGGG	3 cut(s)	1129, 1787, 2759
BpiI	GAAGAC	2 cut(s)	61, 1927
BpmI	CTGGAG	3 cut(s)	131, 1260, 2037
Bpu10I	CCTNAGC	2 cut(s)	769, 1131
Bpu1102I	GCTNAGC	1 cut(s)	2241
BpuEI	CTTGAG	2 cut(s)	1823, 1898
BsaBI	GATNNNNATC	2 cut(s)	225, 660
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	2580
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 104, 134, 834, 864
Bsc4I	CCNNNNNNNGG	8 cut(s)	112, 398, 673, 865, 888, 1945, 2101, 2676
Bse1I	ACTGG	7 cut(s)	548, 1124, 1647, 1793, 1834, 2613, 2754
Bse3DI	GCAATG	4 cut(s)	822, 1159, 1424, 1476
Bse8I	GATNNNNATC	2 cut(s)	225, 660
BseBI	CCWGG	1 cut(s)	1940
BseDI	CCNNGG	1 cut(s)	184
BseJI	GATNNNNATC	2 cut(s)	225, 660
BseLI	CCNNNNNNNGG	8 cut(s)	112, 398, 673, 865, 888, 1945, 2101, 2676
BseMI	GCAATG	4 cut(s)	822, 1159, 1424, 1476
BseMII	CTCAG	4 cut(s)	783, 1602, 2366, 2501
BseNI	ACTGG	7 cut(s)	548, 1124, 1647, 1793, 1834, 2613, 2754
BseRI	GAGGAG	6 cut(s)	128, 1358, 1478, 2122, 2949, 2965
BseSI	GKGCMC	2 cut(s)	304, 859
BseXI	GCAGC	6 cut(s)	1224, 1876, 2044, 2503, 2653, 2895
BseYI	CCCAGC	3 cut(s)	105, 865, 1260
BsgI	GTGCAG	2 cut(s)	1527, 1602
Bsh1236I	CGCG	1 cut(s)	2325
BshFI	GGCC	6 cut(s)	630, 857, 929, 1985, 2422, 2962
BsiHKAI	GWGCWC	5 cut(s)	54, 183, 304, 2355, 2467
BsiSI	CCGG	1 cut(s)	2581
BslFI	GGGAC	2 cut(s)	1243, 1775
BslI	CCNNNNNNNGG	8 cut(s)	112, 398, 673, 865, 888, 1945, 2101, 2676
BsmAI	GTCTC	6 cut(s)	79, 110, 378, 1586, 1607, 2580
BsmBI	CGTCTC	3 cut(s)	79, 110, 1586
BsmFI	GGGAC	2 cut(s)	1243, 1775
BsmI	GAATGC	1 cut(s)	1028
BsnI	GGCC	6 cut(s)	630, 857, 929, 1985, 2422, 2962
Bsp120I	GGGCCC	1 cut(s)	855
Bsp1286I	GDGCHC	6 cut(s)	54, 183, 304, 859, 2355, 2467
Bsp1407I	TGTACA	2 cut(s)	742, 2169
Bsp143I	GATC	9 cut(s)	138, 226, 320, 331, 432, 1731, 2533, 2822, 3029
Bsp1720I	GCTNAGC	1 cut(s)	2241
BspANI	GGCC	6 cut(s)	630, 857, 929, 1985, 2422, 2962
BspCNI	CTCAG	4 cut(s)	782, 1603, 2367, 2500
BspFNI	CGCG	1 cut(s)	2325
BspHI	TCATGA	1 cut(s)	1963
BspLI	GGNNCC	5 cut(s)	857, 880, 1446, 1566, 2892
BspMAI	CTGCAG	2 cut(s)	2062, 2913
BspMI	ACCTGC	1 cut(s)	2822
BspPI	GGATC	1 cut(s)	3024
BspQI	GCTCTTC	1 cut(s)	714
BspTI	CTTAAG	1 cut(s)	2204
BsrDI	GCAATG	4 cut(s)	822, 1159, 1424, 1476
BsrGI	TGTACA	2 cut(s)	742, 2169
BsrI	ACTGG	7 cut(s)	548, 1124, 1647, 1793, 1834, 2613, 2754
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	9 cut(s)	138, 226, 320, 331, 432, 1731, 2533, 2822, 3029
BssSI	CACGAG	1 cut(s)	2235
Bst2BI	CACGAG	1 cut(s)	2235
Bst2UI	CCWGG	1 cut(s)	1940
Bst6I	CTCTTC	3 cut(s)	714, 1186, 2894
BstAFI	CTTAAG	1 cut(s)	2204
BstAPI	GCANNNNNTGC	3 cut(s)	292, 1478, 2852
BstAUI	TGTACA	2 cut(s)	742, 2169
BstC8I	GCNNGC	5 cut(s)	288, 478, 2361, 2496, 2812
BstDEI	CTNAG	7 cut(s)	769, 1131, 1611, 2241, 2375, 2487, 2895
BstDSI	CCRYGG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	2325
BstHHI	GCGC	1 cut(s)	2857
BstKTI	GATC	9 cut(s)	141, 229, 323, 334, 435, 1734, 2536, 2825, 3032
BstMAI	GTCTC	6 cut(s)	79, 110, 378, 1586, 1607, 2580
BstMBI	GATC	9 cut(s)	138, 226, 320, 331, 432, 1731, 2533, 2822, 3029
BstNI	CCWGG	1 cut(s)	1940
BstNSI	RCATGY	5 cut(s)	290, 1251, 2363, 2498, 3013
BstSCI	CCNGG	1 cut(s)	1938
BstSFI	CTRYAG	2 cut(s)	2058, 2909
BstSLI	GKGCMC	2 cut(s)	304, 859
BstUI	CGCG	1 cut(s)	2325
BstV1I	GCAGC	6 cut(s)	1224, 1876, 2044, 2503, 2653, 2895
BstV2I	GAAGAC	2 cut(s)	61, 1927
BstX2I	RGATCY	1 cut(s)	3029
BstXI	CCANNNNNNTGG	1 cut(s)	3065
BstYI	RGATCY	1 cut(s)	3029
BsuRI	GGCC	6 cut(s)	630, 857, 929, 1985, 2422, 2962
BtgI	CCRYGG	1 cut(s)	184
BtgZI	GCGATG	3 cut(s)	647, 699, 2132
BtrI	CACGTC	1 cut(s)	2468
BtsI	GCAGTG	5 cut(s)	793, 1222, 1544, 1866, 2821
BveI	ACCTGC	1 cut(s)	2822
Cac8I	GCNNGC	5 cut(s)	288, 478, 2361, 2496, 2812
CciI	TCATGA	1 cut(s)	1963
CfoI	GCGC	1 cut(s)	2857
Cfr13I	GGNCC	3 cut(s)	134, 855, 856
CpoI	CGGWCCG	1 cut(s)	134
Csp6I	GTAC	8 cut(s)	57, 743, 776, 1398, 1518, 2170, 2621, 2747
CspCI	CAANNNNNGTGG	2 cut(s)	1095, 1130
CspI	CGGWCCG	1 cut(s)	134
CviQI	GTAC	8 cut(s)	57, 743, 776, 1398, 1518, 2170, 2621, 2747
DdeI	CTNAG	7 cut(s)	769, 1131, 1611, 2241, 2375, 2487, 2895
DpnI	GATC	9 cut(s)	140, 228, 322, 333, 434, 1733, 2535, 2824, 3031
DpnII	GATC	9 cut(s)	138, 226, 320, 331, 432, 1731, 2533, 2822, 3029
DrdI	GACNNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	1 cut(s)	454
EaeI	YGGCCR	3 cut(s)	1983, 2420, 2960
Eam1104I	CTCTTC	3 cut(s)	714, 1186, 2894
EarI	CTCTTC	3 cut(s)	714, 1186, 2894
EciI	GGCGGA	3 cut(s)	665, 1203, 3084
Eco24I	GRGCYC	1 cut(s)	859
Eco32I	GATATC	1 cut(s)	943
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	4 cut(s)	263, 1152, 1272, 2694
EcoRI	GAATTC	4 cut(s)	361, 997, 1864, 3049
EcoRII	CCWGG	1 cut(s)	1938
EcoRV	GATATC	1 cut(s)	943
EcoT22I	ATGCAT	2 cut(s)	297, 1249
EcoT38I	GRGCYC	1 cut(s)	859
Esp3I	CGTCTC	3 cut(s)	79, 110, 1586
FalI	AAGNNNNNCTT	2 cut(s)	708, 740
FaqI	GGGAC	2 cut(s)	1243, 1775
FauI	CCCGC	3 cut(s)	958, 2038, 2979
FbaI	TGATCA	1 cut(s)	2533
FblI	GTMKAC	2 cut(s)	173, 1921
Fnu4HI	GCNGC	7 cut(s)	1213, 1890, 2058, 2492, 2667, 2909, 2960
FriOI	GRGCYC	1 cut(s)	859
Fsp4HI	GCNGC	7 cut(s)	1213, 1890, 2058, 2492, 2667, 2909, 2960
FspBI	CTAG	2 cut(s)	609, 672
GlaI	GCGC	1 cut(s)	2856
GluI	GCNGC	7 cut(s)	1213, 1890, 2058, 2492, 2667, 2909, 2960
GsaI	CCCAGC	3 cut(s)	109, 869, 1264
GsuI	CTGGAG	3 cut(s)	131, 1260, 2037
HaeIII	GGCC	6 cut(s)	630, 857, 929, 1985, 2422, 2962
HapII	CCGG	1 cut(s)	2581
HhaI	GCGC	1 cut(s)	2857
Hin6I	GCGC	1 cut(s)	2855
HinP1I	GCGC	1 cut(s)	2855
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	2123
HinfI	GANTC	6 cut(s)	886, 1295, 1538, 1580, 2260, 3080
HpaII	CCGG	1 cut(s)	2581
HphI	GGTGA	5 cut(s)	88, 1244, 2606, 2648, 2846
Hpy166II	GTNNAC	6 cut(s)	174, 302, 1117, 1503, 1922, 2346
Hpy188III	TCNNGA	5 cut(s)	1964, 2235, 2396, 2795, 2874
Hpy8I	GTNNAC	6 cut(s)	174, 302, 1117, 1503, 1922, 2346
Hpy99I	CGWCG	1 cut(s)	178
HpyCH4IV	ACGT	4 cut(s)	119, 2467, 2779, 3035
HpyF3I	CTNAG	7 cut(s)	769, 1131, 1611, 2241, 2375, 2487, 2895
HpySE526I	ACGT	4 cut(s)	119, 2467, 2779, 3035
HspAI	GCGC	1 cut(s)	2855
Ksp22I	TGATCA	1 cut(s)	2533
Kzo9I	GATC	9 cut(s)	138, 226, 320, 331, 432, 1731, 2533, 2822, 3029
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	8 cut(s)	178, 236, 1444, 1564, 2109, 2350, 2663, 2914
Lsp1109I	GCAGC	6 cut(s)	1224, 1876, 2044, 2503, 2653, 2895
MaeI	CTAG	2 cut(s)	609, 672
MaeII	ACGT	4 cut(s)	119, 2467, 2779, 3035
MaeIII	GTNAC	9 cut(s)	157, 211, 819, 1402, 1436, 1522, 2227, 2594, 2992
MalI	GATC	9 cut(s)	140, 228, 322, 333, 434, 1733, 2535, 2824, 3031
MboI	GATC	9 cut(s)	138, 226, 320, 331, 432, 1731, 2533, 2822, 3029
MfeI	CAATTG	1 cut(s)	2424
MflI	RGATCY	1 cut(s)	3029
MhlI	GDGCHC	6 cut(s)	54, 183, 304, 859, 2355, 2467
MlsI	TGGCCA	1 cut(s)	1985
MluNI	TGGCCA	1 cut(s)	1985
MlyI	GAGTC	2 cut(s)	880, 1289
MmeI	TCCRAC	5 cut(s)	112, 241, 492, 2082, 2504
Mox20I	TGGCCA	1 cut(s)	1985
Mph1103I	ATGCAT	2 cut(s)	297, 1249
MroXI	GAANNNNTTC	3 cut(s)	657, 723, 3053
MscI	TGGCCA	1 cut(s)	1985
MseI	TTAA	8 cut(s)	282, 792, 1098, 1845, 2127, 2205, 2385, 3103
MslI	CAYNNNNRTG	3 cut(s)	1269, 2358, 2796
Msp20I	TGGCCA	1 cut(s)	1985
MspA1I	CMGCKG	5 cut(s)	109, 773, 865, 1880, 2057
MspCI	CTTAAG	1 cut(s)	2204
MspI	CCGG	1 cut(s)	2581
MspR9I	CCNGG	1 cut(s)	1940
MunI	CAATTG	1 cut(s)	2424
Mva1269I	GAATGC	1 cut(s)	1028
MvaI	CCWGG	1 cut(s)	1940
MvnI	CGCG	1 cut(s)	2325
NdeII	GATC	9 cut(s)	138, 226, 320, 331, 432, 1731, 2533, 2822, 3029
NlaIV	GGNNCC	5 cut(s)	857, 880, 1446, 1566, 2892
NmuCI	GTSAC	3 cut(s)	157, 211, 2594
NsiI	ATGCAT	2 cut(s)	297, 1249
NspI	RCATGY	5 cut(s)	290, 1251, 2363, 2498, 3013
PaeI	GCATGC	3 cut(s)	290, 2363, 2498
PagI	TCATGA	1 cut(s)	1963
PaqCI	CACCTGC	1 cut(s)	2822
PciSI	GCTCTTC	1 cut(s)	714
PctI	GAATGC	1 cut(s)	1028
PdmI	GAANNNNTTC	3 cut(s)	657, 723, 3053
PfeI	GAWTC	4 cut(s)	1538, 1580, 2260, 3080
PflMI	CCANNNNNTGG	2 cut(s)	1945, 2101
PkrI	GCNGC	7 cut(s)	1214, 1891, 2059, 2493, 2668, 2910, 2961
PleI	GAGTC	2 cut(s)	880, 1289
PpsI	GAGTC	2 cut(s)	880, 1289
Psp6I	CCWGG	1 cut(s)	1938
PspFI	CCCAGC	3 cut(s)	105, 865, 1260
PspGI	CCWGG	1 cut(s)	1938
PspN4I	GGNNCC	5 cut(s)	857, 880, 1446, 1566, 2892
PspOMI	GGGCCC	1 cut(s)	855
PspPI	GGNCC	3 cut(s)	134, 855, 856
PstI	CTGCAG	2 cut(s)	2062, 2913
PsuI	RGATCY	1 cut(s)	3029
PvuII	CAGCTG	5 cut(s)	109, 773, 865, 1880, 2057
RsaI	GTAC	8 cut(s)	58, 744, 777, 1399, 1519, 2171, 2622, 2748
RsaNI	GTAC	8 cut(s)	57, 743, 776, 1398, 1518, 2170, 2621, 2747
RseI	CAYNNNNRTG	3 cut(s)	1269, 2358, 2796
Rsr2I	CGGWCCG	1 cut(s)	134
RsrII	CGGWCCG	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	8 cut(s)	282, 792, 1098, 1845, 2127, 2205, 2385, 3103
SatI	GCNGC	7 cut(s)	1213, 1890, 2058, 2492, 2667, 2909, 2960
Sau3AI	GATC	9 cut(s)	138, 226, 320, 331, 432, 1731, 2533, 2822, 3029
Sau96I	GGNCC	3 cut(s)	134, 855, 856
ScaI	AGTACT	1 cut(s)	2748
SchI	GAGTC	2 cut(s)	880, 1289
ScrFI	CCNGG	1 cut(s)	1940
SduI	GDGCHC	6 cut(s)	54, 183, 304, 859, 2355, 2467
SfcI	CTRYAG	2 cut(s)	2058, 2909
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	3 cut(s)	1269, 2358, 2796
SmlI	CTYRAG	3 cut(s)	1838, 1913, 2204
SmoI	CTYRAG	3 cut(s)	1838, 1913, 2204
SphI	GCATGC	3 cut(s)	290, 2363, 2498
SspMI	CTAG	2 cut(s)	609, 672
StyD4I	CCNGG	1 cut(s)	1938
TaiI	ACGT	4 cut(s)	122, 2470, 2782, 3038
TaqI	TCGA	4 cut(s)	173, 268, 2263, 2873
TaqII	GACCGA	1 cut(s)	151
TatI	WGTACW	4 cut(s)	742, 775, 2169, 2746
TauI	GCSGC	1 cut(s)	2962
TfiI	GAWTC	4 cut(s)	1538, 1580, 2260, 3080
Tru1I	TTAA	8 cut(s)	282, 792, 1098, 1845, 2127, 2205, 2385, 3103
Tru9I	TTAA	8 cut(s)	282, 792, 1098, 1845, 2127, 2205, 2385, 3103
TseFI	GTSAC	3 cut(s)	157, 211, 2594
TseI	GCWGC	6 cut(s)	1212, 1889, 2057, 2491, 2666, 2908
Tsp45I	GTSAC	3 cut(s)	157, 211, 2594
TspGWI	ACGGA	5 cut(s)	191, 223, 1691, 2363, 2942
Van91I	CCANNNNNTGG	2 cut(s)	1945, 2101
Vha464I	CTTAAG	1 cut(s)	2204
VneI	GTGCAC	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	7 cut(s)	361, 997, 1037, 1864, 2137, 2528, 3049
XceI	RCATGY	5 cut(s)	290, 1251, 2363, 2498, 3013
XcmI	CCANNNNNNNNNTGG	3 cut(s)	106, 1268, 2795
XmiI	GTMKAC	2 cut(s)	173, 1921
XmnI	GAANNNNTTC	3 cut(s)	657, 723, 3053
XspI	CTAG	2 cut(s)	609, 672
ZrmI	AGTACT	1 cut(s)	2748
Zsp2I	ATGCAT	2 cut(s)	297, 1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.