Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Reverse (-)

11128232 .. 11136778

Gene Structure 8547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3108 bp

ATGGGGAAGAAGAGCAAAGATGGTGGCCAACCCAGAACCGAAACCGAGCACTGCACCTCCACCGTCTTCGTCTCCAATTTGCCTTACTCTTTCACCAATTCCCAGCTGGAGGAGACCTTCAGTGAAGTGGGGCCCATCAGGCGGTGCTTCATGGTCATGAAAAAGGGGTCGACGGAGCACCGTGGTTTTGGCTTTGTTCAGTTTGCTGTCACAGCAGATGCTGATCGCTCCATTGAGCTGAAGAACAGTGCTTCTGTTGGGGGTCGAAAGATTGCTGTAAAGCATGCCATGCATCGTGCACCCTTTGAGCAACGAAGATCAAAGAAAGATCAAGGTCCTGAATTGGATGAAACTATGAATTCAAAAAGTGGCGAGGATGGAGGCAATTTCAAAGAGGAAAAGGGTGCTTCAAACTTGAAGACAAGAGATGAGGTCAAATTGGAGAAGACCATGAAGTCAAAGAATGACAAGGATGCTGGCAATTTCAGAAAGGAAGAGGACGCTTCAAACTTGGAGGAAGGAGAAAAACTTGTGAAAGCGAGAAAACCAGTAGCACCTGGTAAAGATATAGTGGCAAAAGTGGGAGGTTCTGAAAAGCAGAGGGTTGCTAGAACCGTTATATTTAGTGGCCTTCTTAATGCTGGTATGGCAGAAGAAGTTCATCGCCAAGCTAGGGAGGTTGGCGATGTGTGTTCCATAACTTATCCCTTTCCCAAAGAAGAGGTTCAACAACATGGTCTTGTACAAGATGGATGCAAAATGGATGCCTCGGCTGTACTATACACCAGTGTCAAATCAGCTCATGCTTCTGTTGCAATGTTACACCAGAAGGAGATAAAAGGAGGAATTGTTTGGGCACGTCAGCTGGGTGGGGAGGGTTCCAAGACTCGGAAGTGGAAGCTCATTGTCAGAAATCTTCCTTTCAAGGCAAAGGTCAGTGATATTAAAGATATGTTTTCATCTGCGGGATTTGTCTGGGATGTTTATATACCACAGAATTCTGATACAGGGTTGTCTAAAGGTTTTGCATTCGTCAAATATACACGCAAACAAGATGCGGAAAATGCAATACAAAAGTTCAATGGACAAAAACTTCTTAAAAGACCAATAGCTGTTGACTGGGCTGTTCCAAAGCAGATATATGGTAGTGGCAATGACGCTCTTGCTTCAGAAGATGGAGAAAAGGGTGGGAGAGATGGGGGAAATGATAGCAGCAGCGATGATTTCGAGGGTGATGCTGGAGATACATATGAAATGCCCCAGCACCTTGATAGGATTGGTGCTGCTCCAGATGACTCCAATACAGCAGAGATGAAAGACATCCCTACTGAAATTGATTTTGAGGAGGAAGCAGATATATCAAGAAAAGTTCTAAAAAACTTGACCACTTCCTCTTGTACTGTAACTACTGATGATATGGGTGTTGATAATTCTGCATTTCCCAAAGGGAACAAGGAGCCAACTATTGATTTTGAGGAGGAAGCAGACATTGCTAGAAAAGTTCTAAAAAGGTTTACCATGGCTTCTGGTACAGTAACTGCTGTTGATGATTCATTGCCGAAAAGTAAAAAGGAGCCAACTATTGAAGAATCTGTTAATGAGCCTAGTAAAGTAGCTTCTGAGACTGTGCCTAATAACTTATCTTCTGAAAGTGCCAGTGCATCAGATGCTGCTAAACCACAAACAGAAGAAGAAGATGATTTGCATAGAACAATTTTCATCAGCAACCTTCCTTTTGAGATCACTAATGAAGAAGTCAAACAAAGGTTTTCTGCTTTTGGGCAAGTGCAATCTTTTGTCCCAGTTCTTCATCCACTTACCAAGCGACCAAAAGGAACGGGCTTTCTCAAGTTTAAGACAATAGATGCAGTGACCTCTGCGGTTTCAGCTGGTAGTGCTGCATCTGGCTTGGGAATTTTTCTCAAGGGTAGACAACTGACAGTCTTCCAGGCTTTGGATAGAAAATCGGCTCATGAGAAGGAAGAAAATATGGCCAAAAAGGAGGACATAGACCACCGCAATCTCTATTTGGCAAAGGAAGGTCTTATTCTTGTGGGAACTCCAGCTGCAGAAGGGGTTTCAGCTACTGATATGTCAAAACGCCAAATGTTGGAGAGGAGCAAGGCCATGAAGCTTAAATCTCCAAACTTTCATGTTTCGAAGACGAGATTAGTTATGTACAATTTGCCAAAGTCCATGACTGAAAAACAGCTTAAAAAACTTTGTATTGATGCTGTTACCTCACGAGCTAAGCTACAAAAACCTGTGATTCGACAGATAAAGTGCTTGAAGGATGTGAAAAAGGGAAAGATTGTCACAAAGAACCATTCTCGCGGTGTTGCTTTCATTGAGTTTACAGAGCATCAGCATGCCCTTGTGGCTTTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGCTCAGAACACCGGCCAATAGTGGAGTTTGCACTTGATAATGTTCAGAAATTGAGAGCACGTCAGGTTTCACAACAAACTCAGCAGCATGCCGCTAATGGTAATCAGAAAGAGGTGCGCCAATTTGATCCCTTGAATAGAGCAGATGCCAATCCTAGCAAGAAGTTTGAAAAACGGAGAGACAAAGGCGAGAAACGAAAACTGGACGAGGTAGTACCAAATAAAGAGGGTGAAGTCGAAAATAGGACAAGTGATGTAGCTGCCACTGAAGGGAAGAGATTTCCCAAGAGGCAGAAGAATGGTTCAGATAAAAAAGCAGAAAATATTTTATCAAAAGAAGTACTGCGAAGCTCATCGGGAGGCTCAAAACGTAAAAGCCATAATCAAGATGGCAAGAAGGCTGGTGGTGGAAGATCATTTGAAAATGAAGTCAAGGCAGCTGATACGACCACATCAGTATCATCAAGAAAGACAAGTGTGGAACCTCAGAAGAGGAAGTTGCGGGAGCAAAGTTACATGGAGGGAGGAGAGAACATGATGAGAAGAAGGCCAAAGAATAAAGACCCGATAGGGCGGGATGTTACAGATAAACTTGACATGCTGATCGAAAAATATAGATCCACATTCACACATCAAAATTCCTTCCAAAAAGGTGGCGGAAGGCAAGATTCAATTAGAAAATGGATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

1036

Amino Acids

114.86

Weight (kDa)

9.31

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	22 - 91	7.2e-16	RNA recognition motif
RRM_1	PF00076	301 - 370	4.7e-16	RNA recognition motif
RRM_1	PF00076	572 - 629	1e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	454
AccB7I	CCANNNNNTGG	2 cut(s)	1954, 2110
AccI	GTMKAC	2 cut(s)	170, 1930
AccII	CGCG	1 cut(s)	2334
AclWI	GGATC	2 cut(s)	2537, 3027
AcoI	YGGCCR	3 cut(s)	25, 1992, 2429
AcsI	RAATTY	4 cut(s)	358, 997, 1914, 3052
AcuI	CTGAAG	4 cut(s)	103, 260, 1152, 2703
AfaI	GTAC	7 cut(s)	744, 777, 1399, 1531, 2180, 2631, 2757
AfiI	CCNNNNNNNGG	7 cut(s)	109, 141, 673, 888, 1954, 2110, 2685
AjiI	CACGTC	2 cut(s)	860, 2477
AjnI	CCWGG	2 cut(s)	556, 1947
Alw21I	GWGCWC	4 cut(s)	51, 180, 301, 2476
Alw26I	GTCTC	4 cut(s)	76, 107, 1616, 2589
Alw44I	GTGCAC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	2537, 3027
AlwNI	CAGNNNCTG	4 cut(s)	221, 1538, 1670, 2087
AoxI	GGCC	7 cut(s)	25, 131, 628, 1992, 2124, 2429, 2963
ApaI	GGGCCC	1 cut(s)	135
ApaLI	GTGCAC	1 cut(s)	297
ApeKI	GCWGC	9 cut(s)	1212, 1215, 1283, 1670, 1898, 2066, 2500, 2675, 2852
ApoI	RAATTY	4 cut(s)	358, 997, 1914, 3052
Asp700I	GAANNNNTTC	2 cut(s)	657, 723
AspLEI	GCGC	1 cut(s)	2535
AspS9I	GGNCC	3 cut(s)	131, 132, 335
AsuHPI	GGTGA	3 cut(s)	85, 1244, 2657
AsuII	TTCGAA	1 cut(s)	2159
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	3 cut(s)	135, 301, 859
BaeI	ACNNNNGTAYC	2 cut(s)	2856, 2889
BalI	TGGCCA	2 cut(s)	27, 1994
BanII	GRGCYC	1 cut(s)	135
BarI	GAAGNNNNNNTAC	2 cut(s)	1600, 1632
BauI	CACGAG	1 cut(s)	2244
BbsI	GAAGAC	5 cut(s)	58, 425, 452, 1936, 2168
Bbv12I	GWGCWC	4 cut(s)	51, 180, 301, 2476
BbvI	GCAGC	9 cut(s)	1224, 1227, 1270, 1657, 1885, 2053, 2512, 2662, 2864
BccI	CCATC	7 cut(s)	14, 143, 371, 743, 1169, 1190, 2798
BcgI	CGANNNNNNTGC	2 cut(s)	1217, 1251
BciT130I	CCWGG	2 cut(s)	558, 1949
BcoDI	GTCTC	4 cut(s)	76, 107, 1616, 2589
BfaI	CTAG	5 cut(s)	609, 672, 1494, 1605, 2571
BfmI	CTRYAG	1 cut(s)	2067
BglI	GCCNNNNNGGC	2 cut(s)	139, 2378
BlpI	GCTNAGC	1 cut(s)	2250
BmcAI	AGTACT	1 cut(s)	2757
Bme1390I	CCNGG	2 cut(s)	558, 1949
Bme18I	GGWCC	1 cut(s)	335
BmgBI	CACGTC	2 cut(s)	860, 2477
BmgT120I	GGNCC	3 cut(s)	131, 132, 335
BmiI	GGNNCC	6 cut(s)	132, 133, 880, 1458, 1575, 2898
BmrFI	CCNGG	2 cut(s)	558, 1949
BmrI	ACTGGG	2 cut(s)	1129, 1796
BmuI	ACTGGG	2 cut(s)	1129, 1796
BpiI	GAAGAC	5 cut(s)	58, 425, 452, 1936, 2168
BpmI	CTGGAG	4 cut(s)	128, 1260, 1272, 2046
Bpu1102I	GCTNAGC	1 cut(s)	2250
Bpu14I	TTCGAA	1 cut(s)	2159
BpuEI	CTTGAG	2 cut(s)	1832, 1907
BsaBI	GATNNNNATC	2 cut(s)	222, 2565
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	181, 768, 1518
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 834, 864
Bsc4I	CCNNNNNNNGG	7 cut(s)	109, 141, 673, 888, 1954, 2110, 2685
Bse118I	RCCGGY	1 cut(s)	2427
Bse1I	ACTGG	6 cut(s)	548, 786, 1124, 1656, 1802, 2622
Bse3DI	GCAATG	4 cut(s)	822, 1159, 1488, 1553
Bse8I	GATNNNNATC	2 cut(s)	222, 2565
BseBI	CCWGG	2 cut(s)	558, 1949
BseDI	CCNNGG	3 cut(s)	181, 768, 1518
BseJI	GATNNNNATC	2 cut(s)	222, 2565
BseLI	CCNNNNNNNGG	7 cut(s)	109, 141, 673, 888, 1954, 2110, 2685
BseMI	GCAATG	4 cut(s)	822, 1159, 1488, 1553
BseMII	CTCAG	4 cut(s)	1611, 2433, 2510, 2915
BseNI	ACTGG	6 cut(s)	548, 786, 1124, 1656, 1802, 2622
BseRI	GAGGAG	5 cut(s)	125, 1358, 1490, 2131, 2955
BseSI	GKGCMC	3 cut(s)	135, 301, 859
BseXI	GCAGC	9 cut(s)	1224, 1227, 1270, 1657, 1885, 2053, 2512, 2662, 2864
BseYI	CCCAGC	3 cut(s)	102, 865, 1260
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	2334
BshFI	GGCC	7 cut(s)	27, 133, 630, 1994, 2126, 2431, 2965
BsiHKAI	GWGCWC	4 cut(s)	51, 180, 301, 2476
BsiSI	CCGG	1 cut(s)	2428
BslFI	GGGAC	1 cut(s)	1784
BslI	CCNNNNNNNGG	7 cut(s)	109, 141, 673, 888, 1954, 2110, 2685
BsmAI	GTCTC	4 cut(s)	76, 107, 1616, 2589
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	1784
BsmI	GAATGC	1 cut(s)	1028
BsnI	GGCC	7 cut(s)	27, 133, 630, 1994, 2126, 2431, 2965
Bso31I	GGTCTC	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	2159
Bsp120I	GGGCCC	1 cut(s)	131
Bsp1286I	GDGCHC	6 cut(s)	51, 135, 180, 301, 859, 2476
Bsp1407I	TGTACA	2 cut(s)	742, 2178
Bsp143I	GATC	8 cut(s)	223, 317, 328, 1740, 2542, 2828, 3018, 3032
Bsp1720I	GCTNAGC	1 cut(s)	2250
Bsp19I	CCATGG	1 cut(s)	1518
BspANI	GGCC	7 cut(s)	27, 133, 630, 1994, 2126, 2431, 2965
BspCNI	CTCAG	4 cut(s)	1612, 2432, 2509, 2914
BspFNI	CGCG	1 cut(s)	2334
BspHI	TCATGA	2 cut(s)	156, 1972
BspLI	GGNNCC	6 cut(s)	132, 133, 880, 1458, 1575, 2898
BspMAI	CTGCAG	1 cut(s)	2071
BspPI	GGATC	2 cut(s)	2537, 3027
BspQI	GCTCTTC	1 cut(s)	5
BspT104I	TTCGAA	1 cut(s)	2159
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	4 cut(s)	822, 1159, 1488, 1553
BsrFI	RCCGGY	1 cut(s)	2427
BsrGI	TGTACA	2 cut(s)	742, 2178
BsrI	ACTGG	6 cut(s)	548, 786, 1124, 1656, 1802, 2622
BssAI	RCCGGY	1 cut(s)	2427
BssECI	CCNNGG	3 cut(s)	181, 768, 1518
BssMI	GATC	8 cut(s)	223, 317, 328, 1740, 2542, 2828, 3018, 3032
BssSI	CACGAG	1 cut(s)	2244
BssT1I	CCWWGG	1 cut(s)	1518
Bst2BI	CACGAG	1 cut(s)	2244
Bst2UI	CCWGG	2 cut(s)	558, 1949
Bst4CI	ACNGT	8 cut(s)	64, 182, 248, 616, 1402, 1534, 1627, 1942
Bst6I	CTCTTC	5 cut(s)	5, 489, 714, 2684, 2900
BstAPI	GCANNNNNTGC	3 cut(s)	289, 1490, 1667
BstAUI	TGTACA	2 cut(s)	742, 2178
BstBI	TTCGAA	1 cut(s)	2159
BstC8I	GCNNGC	4 cut(s)	285, 478, 2370, 2505
BstDEI	CTNAG	5 cut(s)	1620, 2250, 2419, 2496, 2901
BstDSI	CCRYGG	2 cut(s)	181, 1518
BstFNI	CGCG	1 cut(s)	2334
BstHHI	GCGC	1 cut(s)	2535
BstKTI	GATC	8 cut(s)	226, 320, 331, 1743, 2545, 2831, 3021, 3035
BstMAI	GTCTC	4 cut(s)	76, 107, 1616, 2589
BstMBI	GATC	8 cut(s)	223, 317, 328, 1740, 2542, 2828, 3018, 3032
BstNI	CCWGG	2 cut(s)	558, 1949
BstNSI	RCATGY	4 cut(s)	287, 2372, 2507, 3016
BstSCI	CCNGG	2 cut(s)	556, 1947
BstSFI	CTRYAG	1 cut(s)	2067
BstSLI	GKGCMC	3 cut(s)	135, 301, 859
BstUI	CGCG	1 cut(s)	2334
BstV1I	GCAGC	9 cut(s)	1224, 1227, 1270, 1657, 1885, 2053, 2512, 2662, 2864
BstV2I	GAAGAC	5 cut(s)	58, 425, 452, 1936, 2168
BstX2I	RGATCY	1 cut(s)	3032
BstXI	CCANNNNNNTGG	1 cut(s)	3068
BstYI	RGATCY	1 cut(s)	3032
BsuRI	GGCC	7 cut(s)	27, 133, 630, 1994, 2126, 2431, 2965
BtgI	CCRYGG	2 cut(s)	181, 1518
BtgZI	GCGATG	3 cut(s)	647, 699, 1233
BtrI	CACGTC	2 cut(s)	860, 2477
BtsI	GCAGTG	2 cut(s)	49, 1875
BtsIMutI	CAGTG	8 cut(s)	49, 127, 253, 793, 943, 1663, 1875, 2679
Cac8I	GCNNGC	4 cut(s)	285, 478, 2370, 2505
CaiI	CAGNNNCTG	4 cut(s)	221, 1538, 1670, 2087
CciI	TCATGA	2 cut(s)	156, 1972
CfoI	GCGC	1 cut(s)	2535
Cfr10I	RCCGGY	1 cut(s)	2427
Cfr13I	GGNCC	3 cut(s)	131, 132, 335
CseI	GACGC	2 cut(s)	509, 1166
CsiI	ACCWGGT	1 cut(s)	556
Csp6I	GTAC	7 cut(s)	743, 776, 1398, 1530, 2179, 2630, 2756
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviQI	GTAC	7 cut(s)	743, 776, 1398, 1530, 2179, 2630, 2756
DdeI	CTNAG	5 cut(s)	1620, 2250, 2419, 2496, 2901
DpnI	GATC	8 cut(s)	225, 319, 330, 1742, 2544, 2830, 3020, 3034
DpnII	GATC	8 cut(s)	223, 317, 328, 1740, 2542, 2828, 3018, 3032
DrdI	GACNNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	1 cut(s)	454
EaeI	YGGCCR	3 cut(s)	25, 1992, 2429
Eam1104I	CTCTTC	5 cut(s)	5, 489, 714, 2684, 2900
EarI	CTCTTC	5 cut(s)	5, 489, 714, 2684, 2900
EciI	GGCGGA	1 cut(s)	3087
Eco130I	CCWWGG	1 cut(s)	1518
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	335
Eco57I	CTGAAG	4 cut(s)	103, 260, 1152, 2703
EcoO109I	RGGNCCY	2 cut(s)	131, 335
EcoRI	GAATTC	2 cut(s)	358, 997
EcoRII	CCWGG	2 cut(s)	556, 1947
EcoT14I	CCWWGG	1 cut(s)	1518
EcoT22I	ATGCAT	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	1518
Esp3I	CGTCTC	1 cut(s)	76
FaqI	GGGAC	1 cut(s)	1784
FauI	CCCGC	3 cut(s)	958, 2910, 2982
FauNDI	CATATG	1 cut(s)	1249
FblI	GTMKAC	2 cut(s)	170, 1930
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	5 cut(s)	609, 672, 1494, 1605, 2571
GlaI	GCGC	1 cut(s)	2534
GsaI	CCCAGC	3 cut(s)	106, 869, 1264
GsuI	CTGGAG	4 cut(s)	128, 1260, 1272, 2046
HaeIII	GGCC	7 cut(s)	27, 133, 630, 1994, 2126, 2431, 2965
HapII	CCGG	1 cut(s)	2428
HgaI	GACGC	2 cut(s)	509, 1166
HhaI	GCGC	1 cut(s)	2535
Hin6I	GCGC	1 cut(s)	2533
HinP1I	GCGC	1 cut(s)	2533
HincII	GTYRAC	2 cut(s)	171, 1117
HindII	GTYRAC	2 cut(s)	171, 1117
HindIII	AAGCTT	1 cut(s)	2132
HinfI	GANTC	6 cut(s)	886, 1295, 1550, 1589, 2269, 3083
HpaII	CCGG	1 cut(s)	2428
HphI	GGTGA	3 cut(s)	85, 1244, 2657
Hpy166II	GTNNAC	6 cut(s)	171, 299, 1117, 1515, 1931, 2355
Hpy8I	GTNNAC	6 cut(s)	171, 299, 1117, 1515, 1931, 2355
Hpy99I	CGWCG	1 cut(s)	175
HpyCH4III	ACNGT	8 cut(s)	64, 182, 248, 616, 1402, 1534, 1627, 1942
HpyCH4IV	ACGT	3 cut(s)	859, 2476, 2785
HpyF3I	CTNAG	5 cut(s)	1620, 2250, 2419, 2496, 2901
HpySE526I	ACGT	3 cut(s)	859, 2476, 2785
HspAI	GCGC	1 cut(s)	2533
Kzo9I	GATC	8 cut(s)	223, 317, 328, 1740, 2542, 2828, 3018, 3032
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	7 cut(s)	175, 233, 1291, 1456, 1573, 2118, 2920
Lsp1109I	GCAGC	9 cut(s)	1224, 1227, 1270, 1657, 1885, 2053, 2512, 2662, 2864
MabI	ACCWGGT	1 cut(s)	556
MaeI	CTAG	5 cut(s)	609, 672, 1494, 1605, 2571
MaeII	ACGT	3 cut(s)	859, 2476, 2785
MaeIII	GTNAC	9 cut(s)	208, 819, 1402, 1534, 1870, 2236, 2314, 2927, 2995
MalI	GATC	8 cut(s)	225, 319, 330, 1742, 2544, 2830, 3020, 3034
MboI	GATC	8 cut(s)	223, 317, 328, 1740, 2542, 2828, 3018, 3032
MflI	RGATCY	1 cut(s)	3032
MhlI	GDGCHC	6 cut(s)	51, 135, 180, 301, 859, 2476
MlsI	TGGCCA	2 cut(s)	27, 1994
MluNI	TGGCCA	2 cut(s)	27, 1994
MlyI	GAGTC	2 cut(s)	880, 1289
MmeI	TCCRAC	1 cut(s)	2091
Mox20I	TGGCCA	2 cut(s)	27, 1994
Mph1103I	ATGCAT	1 cut(s)	294
MroXI	GAANNNNTTC	2 cut(s)	657, 723
MscI	TGGCCA	2 cut(s)	27, 1994
MseI	TTAA	9 cut(s)	636, 945, 1098, 1596, 1854, 2136, 2214, 2394, 3106
MslI	CAYNNNNRTG	2 cut(s)	155, 2367
Msp20I	TGGCCA	2 cut(s)	27, 1994
MspA1I	CMGCKG	5 cut(s)	106, 865, 1889, 2066, 2855
MspI	CCGG	1 cut(s)	2428
MspR9I	CCNGG	2 cut(s)	558, 1949
Mva1269I	GAATGC	1 cut(s)	1028
MvaI	CCWGG	2 cut(s)	558, 1949
MvnI	CGCG	1 cut(s)	2334
NcoI	CCATGG	1 cut(s)	1518
NdeI	CATATG	1 cut(s)	1249
NdeII	GATC	8 cut(s)	223, 317, 328, 1740, 2542, 2828, 3018, 3032
NlaIV	GGNNCC	6 cut(s)	132, 133, 880, 1458, 1575, 2898
NmeAIII	GCCGAG	1 cut(s)	749
NmuCI	GTSAC	3 cut(s)	208, 1870, 2314
NsiI	ATGCAT	1 cut(s)	294
NspI	RCATGY	4 cut(s)	287, 2372, 2507, 3016
NspV	TTCGAA	1 cut(s)	2159
PaeI	GCATGC	3 cut(s)	287, 2372, 2507
PagI	TCATGA	2 cut(s)	156, 1972
PciSI	GCTCTTC	1 cut(s)	5
PctI	GAATGC	1 cut(s)	1028
PdmI	GAANNNNTTC	2 cut(s)	657, 723
PfeI	GAWTC	4 cut(s)	1550, 1589, 2269, 3083
PflMI	CCANNNNNTGG	2 cut(s)	1954, 2110
PleI	GAGTC	2 cut(s)	880, 1289
PpsI	GAGTC	2 cut(s)	880, 1289
PpuMI	RGGWCCY	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	556, 1947
PspFI	CCCAGC	3 cut(s)	102, 865, 1260
PspGI	CCWGG	2 cut(s)	556, 1947
PspN4I	GGNNCC	6 cut(s)	132, 133, 880, 1458, 1575, 2898
PspOMI	GGGCCC	1 cut(s)	131
PspPI	GGNCC	3 cut(s)	131, 132, 335
PspPPI	RGGWCCY	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	2071
PstNI	CAGNNNCTG	4 cut(s)	221, 1538, 1670, 2087
PsuI	RGATCY	1 cut(s)	3032
PvuII	CAGCTG	5 cut(s)	106, 865, 1889, 2066, 2855
RsaI	GTAC	7 cut(s)	744, 777, 1399, 1531, 2180, 2631, 2757
RsaNI	GTAC	7 cut(s)	743, 776, 1398, 1530, 2179, 2630, 2756
RseI	CAYNNNNRTG	2 cut(s)	155, 2367
SalI	GTCGAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	5
SaqAI	TTAA	9 cut(s)	636, 945, 1098, 1596, 1854, 2136, 2214, 2394, 3106
Sau3AI	GATC	8 cut(s)	223, 317, 328, 1740, 2542, 2828, 3018, 3032
Sau96I	GGNCC	3 cut(s)	131, 132, 335
ScaI	AGTACT	1 cut(s)	2757
SchI	GAGTC	2 cut(s)	880, 1289
ScrFI	CCNGG	2 cut(s)	558, 1949
SduI	GDGCHC	6 cut(s)	51, 135, 180, 301, 859, 2476
SexAI	ACCWGGT	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	2067
SfuI	TTCGAA	1 cut(s)	2159
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	2 cut(s)	155, 2367
SmlI	CTYRAG	2 cut(s)	1847, 1922
SmoI	CTYRAG	2 cut(s)	1847, 1922
SphI	GCATGC	3 cut(s)	287, 2372, 2507
SspI	AATATT	1 cut(s)	2740
SspMI	CTAG	5 cut(s)	609, 672, 1494, 1605, 2571
StyD4I	CCNGG	2 cut(s)	556, 1947
StyI	CCWWGG	1 cut(s)	1518
TaaI	ACNGT	8 cut(s)	64, 182, 248, 616, 1402, 1534, 1627, 1942
TaiI	ACGT	3 cut(s)	862, 2479, 2788
TaqI	TCGA	7 cut(s)	170, 265, 1227, 2159, 2272, 2652, 3021
TatI	WGTACW	5 cut(s)	742, 775, 1397, 2178, 2755
TauI	GCSGC	1 cut(s)	2510
TfiI	GAWTC	4 cut(s)	1550, 1589, 2269, 3083
Tru1I	TTAA	9 cut(s)	636, 945, 1098, 1596, 1854, 2136, 2214, 2394, 3106
Tru9I	TTAA	9 cut(s)	636, 945, 1098, 1596, 1854, 2136, 2214, 2394, 3106
TscAI	CASTG	8 cut(s)	56, 127, 253, 793, 943, 1663, 1875, 2686
TseFI	GTSAC	3 cut(s)	208, 1870, 2314
TseI	GCWGC	9 cut(s)	1212, 1215, 1283, 1670, 1898, 2066, 2500, 2675, 2852
Tsp45I	GTSAC	3 cut(s)	208, 1870, 2314
TspGWI	ACGGA	2 cut(s)	188, 2605
TspRI	CASTG	8 cut(s)	56, 127, 253, 793, 943, 1663, 1875, 2686
Van91I	CCANNNNNTGG	2 cut(s)	1954, 2110
VneI	GTGCAC	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	4 cut(s)	358, 997, 1914, 3052
XceI	RCATGY	4 cut(s)	287, 2372, 2507, 3016
XcmI	CCANNNNNNNNNTGG	2 cut(s)	103, 2801
XmiI	GTMKAC	2 cut(s)	170, 1930
XmnI	GAANNNNTTC	2 cut(s)	657, 723
XspI	CTAG	5 cut(s)	609, 672, 1494, 1605, 2571
ZrmI	AGTACT	1 cut(s)	2757
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.