Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003667

Physical Location & Seq

Genomic Coordinates Forward (+)

8666141 .. 8674290

Gene Structure 8150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09800.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2934 bp

ATGGGGAAGAAGAAGAGCACGAAAGATGGTAGCCAACCCAGAACCGAAACCGAGCACTGCACCTCCACCGTGTTCGTCTCCAATTTGCCTTACTCTTTCACCAATTCCCAGCTGGAGGAGACCTTCAGTGAAGTCGGACCCATCAGGCGGTGCTTCATGGTCACCAAAAAGGGGTCGACGGAGCACCGTGGTTTTGGCTTTGTTCAGTTTGCTGTCACAGCAGATGCTGATCGCTCTGCTGAGCTGAAGAACGGTGCGTCTGTTGGGGGTCGAAAGATTGCTGTTAAGCATGCCATGCATCGTGCGCCCTTTAAGCAACGAAGATCAAAGAAAGATCAAGGTTCTGATTTGGATGAAAATATGAATTCAAAAAGTGGCGAGGATGGAGGCAATTTCAAAGAAGAAAAGGGTGCTTCAAACTTGAAGACAAGAGAGGTCAAATTGGAGAAGACCATGAAGTCAAAGAATGACAAGGATGCGGGCAATTTCAAAAAGGAAAAGGATGCTTCAAACTTGGAGGAAGGAGAGAAACATGTGAAAGCCAGAAAACCAGTAGCACCAGGTAAAGATATAGTGGCAAAAGTGGGAGGTTCTGAAAAGCAGAGGGTTGCTAGAACCATTATATTTGGTGGCCTTCTTAATGCTGGTATGGCGGAAGATGTTCATCGCCAAGCTAGGGAGGTTGGCGATGTGTGTTCTATAACTTATCCTTTTCCCAAAGAAGAGGTTCAACAACATGGTCTTGTACTAGATGGATGCAAAATGGATGCCTCAGCTGTACTGTACAACAGTGTTAAATCAGCTCATGCTTCTGTTGCAATGTTACACCAAAAGGAGATAAAAGGAGGAATTGTTTGGGCACGTCAGCTGGGTGGGGAGGGTTCCAAGACTCGGAAGTGGAAGCTCATTATCAGAAATCTTCCTTTCAAGGCCAAAGTCACTGATATTAAAGATATGTTTTCATCTGCGGGATTTGTTTGGGATGTTTATATACCACAGAATTCTGATACAGGGTTGTCTAAAGGTTTTGCATTCGTCAAATTCACACGCAAACAAGATGCGGAAAATGCAATACAAAAGTTCAATGGACAAAAACTTCTTAAAAGACCAATAGCTGTTGACTGGGCTGTTCCAAAGCAGATATATGGTAGTGGCAATGATGCTCTTCTTGCTTCAGAATATGGAGAAAAGAGTGGAAGAGATGCGGGAAATGATAGCGGCAGTGATGATTTCGAGGGTGACGCTGGAGATACATATGAAACGTCCCAGCACCTCAATAGGATTGGCACTGCTCCAGATGACTCCAATACAGCAGAGATGAAAGACATCCCTACTGAAATTGATTTTGTGGGGGAAGCAGATATATCAAGAAAAGTTTTAGAAAACTTGACCACTTCCTCTTGTACTGTAAATACTGATGATAAGGGTGTTGATAATTCTGCATTTCCCAAAGGGAACAAGGAGCCAACTATTGATTTTGAGGAGGAAGCAGACATTGCAAGAAAAGTTCTAAAAAAGTTTACCGCGGCCTCTGATGCTGCTAAACCACAAACAGAAGAAGATGATTTGCATAGAACAATTTTCATCAGCAACCTTCCGTTTGAGATCACTAATGAAGAAGTCAAACAAAGGTTTTCTGCTTTTGGGCAAGTGCAATCTTTTGTCCCAGTTCTTCATCCACTGACCAAGCGACCAAAAGGAACGGGCTTTCTCAAGTTTAAAACAATAGATGCAGTGAACTCTGCGGTTTCAGCTGGTAGCGCTGCATCTGGCTTGGGAATTTTTCTCAAGGGTAGACAACTGACAGTCTTCCAGGCATTGGATAGAAAATCGGCTCATGAGAAGGAAGAAAATATGGCCAAAAAGGAGGACATAGACCACCGCAATCTCTATTTGGCAAAGGAAGGTCTTATTCTTGCGGGAACTCCAGCTGCAGAAGGGGTTTCAGCTACTGATATGTCAAAACGCCAGATGTTGGAGAGGAGCAAGGCAATGAAGCTTAAATCTCCAAATTTTCATGTTTCGAAGACAAGATTAGTTATGTACAATTTGCCCAAGTCCATGACTGAAAAACAGCTTAAGAAACTTTGTATCGACGCTGTCACCTCACGAGCTAAGCTACAAAAACCTGTGATTAGACAGATAAAGTGCTTGAAGGATGTGAAAAAGGGAAATATTGTCACAAAGAACCACTCACGCGGTGTTGCTTTCATCGAGTTTACAGAGCATCAGCATGCGCTTGTGGCTTTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGTTCAGAACACCGGCCAATTGTGGAGTTTGCACTTGATAATGTTCAGAAATTGAGAGCACGTCAGGTTTCACAACAAACTCAGCAGCATGCTGCTAATGGTAATCAGAAAGAGGTGCGCCAATTTGATCCCTTGAATAGAGCAGATGCCAATCCTAGCAAGAAGTTTGAAAAACGGAGAGACAAAGGCAGCAAACGAAAACTGGATGAGGTAGTACCAAATAAAGAGGGTGAAGTCGAAAATAGGACCAGTGATGGAGCTGCTACTGAAGGGCAGAGACTTCCCAAGAGGCAGAAGAATGGTTCAGATAAAAAAGCAGAAAAGATTTCATCAAAAGAAATACTGGGAAGCTCATCGGCGGAAGGCTCAAAACGTAAAAGCCATCATCAAGATGGCAGGAAGGCTGGTGGTGGAAGATCGTTTGAAAATGAAGTCAAGGCAGTTGATGCGACCACGTCAGTATCATCAAGAAAGACAAATGTGGAACCTAAGAAGAGGAAGCTGCGGGAGCAAAGTTACATGGAGGGAGGAGAGAACATGATGAGAAGAAGGCCGAAGAATAAAGACCCAATAGGGCGGGATGTTGCAGATAAACTAGACATGCTGATCGAAAAATATAGATCCACGTTCACAAATCAAAATTCCTTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRM_1

Protein Analysis

978

Amino Acids

108.35

Weight (kDa)

9.53

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	1 - 53	1.3e-10	RNA recognition motif
RRM_1	PF00076	255 - 312	7.2e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21440
fragaria_vesca	FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_2g09800 FvH4_7g06401 FvH4_7g06402 FvH4_7g06403 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280 FvH4_7g12280
malus_domestica	MD05G1059700.v1.1 MD10G1067900.v1.1
prunus_persica	Prupe.8G085300_v2.0.a1 Prupe.8G089600_v2.0.a1 Prupe.8G089700_v2.0.a1 Prupe.8G095100_v2.0.a1
pyrus_communis	pycom05g05100 pycom10g05370
rosa_chinensis	RchiOBHm_Chr6g0266121
rosa_laevigata	RLG00000014114
rosa_multiflora	Rmu_sc0004324.1_g000009 Rmu_sc0022087.1_g000001 Rmu_sc0040448.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435210 Rroxscaffold_7G00201960
rosa_rugosa	Rorug06G0024200
rosa_samantha	Rh6AG144800 Rh6BG145400 Rh6CG141900 Rh6DG129700
rosa_wichuraiana	Rw6G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	457
AccB7I	CCANNNNNTGG	2 cut(s)	1819, 1975
AccI	GTMKAC	2 cut(s)	176, 1795
AccII	CGCG	2 cut(s)	1526, 2199
AclWI	GGATC	2 cut(s)	2402, 2895
AcoI	YGGCCR	2 cut(s)	1857, 2294
AcsI	RAATTY	6 cut(s)	364, 1000, 1040, 1779, 2011, 2920
AcuI	CTGAAG	4 cut(s)	109, 266, 1158, 2568
AdeI	CACNNNGTG	1 cut(s)	2201
AfaI	GTAC	6 cut(s)	747, 780, 785, 1405, 2045, 2496
AfeI	AGCGCT	1 cut(s)	1762
AfiI	CCNNNNNNNGG	7 cut(s)	115, 147, 171, 676, 891, 1819, 1975
AflII	CTTAAG	1 cut(s)	2078
AflIII	ACRYGT	1 cut(s)	532
AjiI	CACGTC	3 cut(s)	863, 2342, 2736
AjnI	CCWGG	2 cut(s)	559, 1812
Alw21I	GWGCWC	4 cut(s)	20, 57, 186, 2341
Alw26I	GTCTC	4 cut(s)	82, 113, 2454, 2551
AlwI	GGATC	2 cut(s)	2402, 2895
AlwNI	CAGNNNCTG	2 cut(s)	227, 1952
Aor51HI	AGCGCT	1 cut(s)	1762
AoxI	GGCC	6 cut(s)	631, 930, 1527, 1857, 2294, 2831
ApeKI	GCWGC	8 cut(s)	1538, 1763, 1931, 2365, 2372, 2469, 2540, 2782
ApoI	RAATTY	6 cut(s)	364, 1000, 1040, 1779, 2011, 2920
Asp700I	GAANNNNTTC	2 cut(s)	660, 726
AspLEI	GCGC	4 cut(s)	307, 1763, 2239, 2400
AspS9I	GGNCC	2 cut(s)	137, 2526
AsuHPI	GGTGA	5 cut(s)	91, 154, 1250, 2095, 2522
AsuII	TTCGAA	1 cut(s)	2024
AvaII	GGWCC	2 cut(s)	137, 2526
BaeGI	GKGCMC	1 cut(s)	862
BaeI	ACNNNNGTAYC	2 cut(s)	2724, 2757
BalI	TGGCCA	1 cut(s)	1859
BauI	CACGAG	1 cut(s)	2109
BbsI	GAAGAC	4 cut(s)	431, 455, 1801, 2033
Bbv12I	GWGCWC	4 cut(s)	20, 57, 186, 2341
BbvCI	CCTCAGC	1 cut(s)	772
BbvI	GCAGC	8 cut(s)	1525, 1750, 1918, 2359, 2377, 2481, 2527, 2769
BccI	CCATC	7 cut(s)	20, 149, 377, 746, 2528, 2666, 2670
BciT130I	CCWGG	2 cut(s)	561, 1814
BcoDI	GTCTC	4 cut(s)	82, 113, 2454, 2551
BfaI	CTAG	5 cut(s)	612, 675, 749, 2436, 2876
BfmI	CTRYAG	1 cut(s)	1932
BfoI	RGCGCY	1 cut(s)	1764
BfrI	CTTAAG	1 cut(s)	2078
BlpI	GCTNAGC	2 cut(s)	240, 2115
Bme1390I	CCNGG	2 cut(s)	561, 1814
Bme18I	GGWCC	2 cut(s)	137, 2526
BmgBI	CACGTC	3 cut(s)	863, 2342, 2736
BmgT120I	GGNCC	2 cut(s)	137, 2526
BmiI	GGNNCC	4 cut(s)	139, 883, 1464, 2766
BmrFI	CCNGG	2 cut(s)	561, 1814
BmrI	ACTGGG	3 cut(s)	1132, 1661, 2633
BmuI	ACTGGG	3 cut(s)	1132, 1661, 2633
BpiI	GAAGAC	4 cut(s)	431, 455, 1801, 2033
BpmI	CTGGAG	4 cut(s)	134, 1266, 1278, 1911
Bpu10I	CCTNAGC	1 cut(s)	772
Bpu1102I	GCTNAGC	2 cut(s)	240, 2115
Bpu14I	TTCGAA	1 cut(s)	2024
BpuEI	CTTGAG	2 cut(s)	1697, 1772
BsaBI	GATNNNNATC	3 cut(s)	228, 663, 2430
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	187, 1524
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 837, 867
Bsc4I	CCNNNNNNNGG	7 cut(s)	115, 147, 171, 676, 891, 1819, 1975
Bse118I	RCCGGY	1 cut(s)	2292
Bse1I	ACTGG	6 cut(s)	551, 1127, 1667, 2487, 2529, 2628
Bse3DI	GCAATG	4 cut(s)	825, 1162, 1494, 1998
Bse8I	GATNNNNATC	3 cut(s)	228, 663, 2430
BseBI	CCWGG	2 cut(s)	561, 1814
BseDI	CCNNGG	2 cut(s)	187, 1524
BseJI	GATNNNNATC	3 cut(s)	228, 663, 2430
BseLI	CCNNNNNNNGG	7 cut(s)	115, 147, 171, 676, 891, 1819, 1975
BseMI	GCAATG	4 cut(s)	825, 1162, 1494, 1998
BseMII	CTCAG	3 cut(s)	231, 786, 2375
BseNI	ACTGG	6 cut(s)	551, 1127, 1667, 2487, 2529, 2628
BseRI	GAGGAG	4 cut(s)	131, 1496, 1996, 2823
BseSI	GKGCMC	1 cut(s)	862
BseXI	GCAGC	8 cut(s)	1525, 1750, 1918, 2359, 2377, 2481, 2527, 2769
BseYI	CCCAGC	3 cut(s)	108, 868, 1266
BsgI	GTGCAG	1 cut(s)	43
Bsh1236I	CGCG	2 cut(s)	1526, 2199
BshFI	GGCC	6 cut(s)	633, 932, 1529, 1859, 2296, 2833
BsiHKAI	GWGCWC	4 cut(s)	20, 57, 186, 2341
BsiSI	CCGG	1 cut(s)	2293
BslFI	GGGAC	2 cut(s)	1249, 1649
BslI	CCNNNNNNNGG	7 cut(s)	115, 147, 171, 676, 891, 1819, 1975
BsmAI	GTCTC	4 cut(s)	82, 113, 2454, 2551
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	1249, 1649
BsmI	GAATGC	1 cut(s)	1031
BsnI	GGCC	6 cut(s)	633, 932, 1529, 1859, 2296, 2833
Bso31I	GGTCTC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	2024
Bsp1286I	GDGCHC	5 cut(s)	20, 57, 186, 862, 2341
Bsp1407I	TGTACA	2 cut(s)	783, 2043
Bsp143I	GATC	8 cut(s)	229, 323, 334, 1605, 2407, 2696, 2886, 2900
Bsp1720I	GCTNAGC	2 cut(s)	240, 2115
BspANI	GGCC	6 cut(s)	633, 932, 1529, 1859, 2296, 2833
BspCNI	CTCAG	3 cut(s)	232, 785, 2374
BspFNI	CGCG	2 cut(s)	1526, 2199
BspHI	TCATGA	1 cut(s)	1837
BspLI	GGNNCC	4 cut(s)	139, 883, 1464, 2766
BspMAI	CTGCAG	1 cut(s)	1936
BspPI	GGATC	2 cut(s)	2402, 2895
BspQI	GCTCTTC	2 cut(s)	8, 1170
BspT104I	TTCGAA	1 cut(s)	2024
BspTI	CTTAAG	1 cut(s)	2078
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	4 cut(s)	825, 1162, 1494, 1998
BsrFI	RCCGGY	1 cut(s)	2292
BsrGI	TGTACA	2 cut(s)	783, 2043
BsrI	ACTGG	6 cut(s)	551, 1127, 1667, 2487, 2529, 2628
BssAI	RCCGGY	1 cut(s)	2292
BssECI	CCNNGG	2 cut(s)	187, 1524
BssMI	GATC	8 cut(s)	229, 323, 334, 1605, 2407, 2696, 2886, 2900
BssSI	CACGAG	1 cut(s)	2109
Bst2BI	CACGAG	1 cut(s)	2109
Bst2UI	CCWGG	2 cut(s)	561, 1814
Bst4CI	ACNGT	7 cut(s)	70, 188, 254, 783, 791, 1408, 1807
Bst6I	CTCTTC	5 cut(s)	8, 717, 1170, 1192, 2768
BstAFI	CTTAAG	1 cut(s)	2078
BstAPI	GCANNNNNTGC	3 cut(s)	295, 1496, 2726
BstAUI	TGTACA	2 cut(s)	783, 2043
BstBI	TTCGAA	1 cut(s)	2024
BstC8I	GCNNGC	4 cut(s)	291, 481, 2235, 2370
BstDEI	CTNAG	5 cut(s)	240, 772, 2115, 2361, 2769
BstDSI	CCRYGG	2 cut(s)	187, 1524
BstEII	GGTNACC	1 cut(s)	160
BstFNI	CGCG	2 cut(s)	1526, 2199
BstH2I	RGCGCY	1 cut(s)	1764
BstHHI	GCGC	4 cut(s)	307, 1763, 2239, 2400
BstKTI	GATC	8 cut(s)	232, 326, 337, 1608, 2410, 2699, 2889, 2903
BstMAI	GTCTC	4 cut(s)	82, 113, 2454, 2551
BstMBI	GATC	8 cut(s)	229, 323, 334, 1605, 2407, 2696, 2886, 2900
BstNI	CCWGG	2 cut(s)	561, 1814
BstNSI	RCATGY	5 cut(s)	293, 536, 2237, 2372, 2884
BstPI	GGTNACC	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	559, 1812
BstSFI	CTRYAG	1 cut(s)	1932
BstSLI	GKGCMC	1 cut(s)	862
BstUI	CGCG	2 cut(s)	1526, 2199
BstV1I	GCAGC	8 cut(s)	1525, 1750, 1918, 2359, 2377, 2481, 2527, 2769
BstV2I	GAAGAC	4 cut(s)	431, 455, 1801, 2033
BstX2I	RGATCY	1 cut(s)	2900
BstYI	RGATCY	1 cut(s)	2900
BsuRI	GGCC	6 cut(s)	633, 932, 1529, 1859, 2296, 2833
BtgI	CCRYGG	2 cut(s)	187, 1524
BtgZI	GCGATG	2 cut(s)	650, 702
BtrI	CACGTC	3 cut(s)	863, 2342, 2736
BtsI	GCAGTG	4 cut(s)	55, 1228, 1287, 1740
BtsIMutI	CAGTG	9 cut(s)	55, 133, 796, 939, 1228, 1287, 1679, 1740, 2536
Cac8I	GCNNGC	4 cut(s)	291, 481, 2235, 2370
CaiI	CAGNNNCTG	2 cut(s)	227, 1952
CciI	TCATGA	1 cut(s)	1837
CfoI	GCGC	4 cut(s)	307, 1763, 2239, 2400
Cfr10I	RCCGGY	1 cut(s)	2292
Cfr13I	GGNCC	2 cut(s)	137, 2526
Cfr42I	CCGCGG	1 cut(s)	1527
CseI	GACGC	3 cut(s)	246, 1250, 2105
CsiI	ACCWGGT	1 cut(s)	559
Csp6I	GTAC	6 cut(s)	746, 779, 784, 1404, 2044, 2495
CviQI	GTAC	6 cut(s)	746, 779, 784, 1404, 2044, 2495
DdeI	CTNAG	5 cut(s)	240, 772, 2115, 2361, 2769
DpnI	GATC	8 cut(s)	231, 325, 336, 1607, 2409, 2698, 2888, 2902
DpnII	GATC	8 cut(s)	229, 323, 334, 1605, 2407, 2696, 2886, 2900
DraI	TTTAAA	1 cut(s)	1720
DraIII	CACNNNGTG	1 cut(s)	2201
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	2 cut(s)	1857, 2294
Eam1104I	CTCTTC	5 cut(s)	8, 717, 1170, 1192, 2768
EarI	CTCTTC	5 cut(s)	8, 717, 1170, 1192, 2768
EciI	GGCGGA	2 cut(s)	668, 2654
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	137, 2526
Eco47III	AGCGCT	1 cut(s)	1762
Eco57I	CTGAAG	4 cut(s)	109, 266, 1158, 2568
Eco91I	GGTNACC	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	160
EcoRI	GAATTC	2 cut(s)	364, 1000
EcoRII	CCWGG	2 cut(s)	559, 1812
EcoT22I	ATGCAT	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	82
FaqI	GGGAC	2 cut(s)	1249, 1649
FauI	CCCGC	6 cut(s)	472, 961, 1198, 1912, 2778, 2850
FauNDI	CATATG	1 cut(s)	1255
FblI	GTMKAC	2 cut(s)	176, 1795
FspBI	CTAG	5 cut(s)	612, 675, 749, 2436, 2876
GlaI	GCGC	4 cut(s)	306, 1762, 2238, 2399
GsaI	CCCAGC	3 cut(s)	112, 872, 1270
GsuI	CTGGAG	4 cut(s)	134, 1266, 1278, 1911
HaeII	RGCGCY	1 cut(s)	1764
HaeIII	GGCC	6 cut(s)	633, 932, 1529, 1859, 2296, 2833
HapII	CCGG	1 cut(s)	2293
HgaI	GACGC	3 cut(s)	246, 1250, 2105
HhaI	GCGC	4 cut(s)	307, 1763, 2239, 2400
Hin6I	GCGC	4 cut(s)	305, 1761, 2237, 2398
HinP1I	GCGC	4 cut(s)	305, 1761, 2237, 2398
HincII	GTYRAC	2 cut(s)	177, 1120
HindII	GTYRAC	2 cut(s)	177, 1120
HindIII	AAGCTT	1 cut(s)	1997
HinfI	GANTC	2 cut(s)	889, 1301
HpaII	CCGG	1 cut(s)	2293
HphI	GGTGA	5 cut(s)	91, 154, 1250, 2095, 2522
Hpy166II	GTNNAC	7 cut(s)	177, 1120, 1521, 1738, 1796, 2220, 2910
Hpy188III	TCNNGA	7 cut(s)	1295, 1368, 1838, 2109, 2270, 2669, 2748
Hpy8I	GTNNAC	7 cut(s)	177, 1120, 1521, 1738, 1796, 2220, 2910
Hpy99I	CGWCG	2 cut(s)	181, 2099
HpyCH4III	ACNGT	7 cut(s)	70, 188, 254, 783, 791, 1408, 1807
HpyCH4IV	ACGT	6 cut(s)	862, 1262, 2341, 2653, 2735, 2906
HpyF3I	CTNAG	5 cut(s)	240, 772, 2115, 2361, 2769
HpySE526I	ACGT	6 cut(s)	862, 1262, 2341, 2653, 2735, 2906
HspAI	GCGC	4 cut(s)	305, 1761, 2237, 2398
KspI	CCGCGG	1 cut(s)	1527
Kzo9I	GATC	8 cut(s)	229, 323, 334, 1605, 2407, 2696, 2886, 2900
LguI	GCTCTTC	2 cut(s)	8, 1170
LmnI	GCTCC	6 cut(s)	181, 1297, 1462, 1983, 2537, 2788
Lsp1109I	GCAGC	8 cut(s)	1525, 1750, 1918, 2359, 2377, 2481, 2527, 2769
MabI	ACCWGGT	1 cut(s)	559
MaeI	CTAG	5 cut(s)	612, 675, 749, 2436, 2876
MaeII	ACGT	6 cut(s)	862, 1262, 2341, 2653, 2735, 2906
MaeIII	GTNAC	8 cut(s)	160, 214, 822, 937, 1238, 2101, 2179, 2795
MalI	GATC	8 cut(s)	231, 325, 336, 1607, 2409, 2698, 2888, 2902
MboI	GATC	8 cut(s)	229, 323, 334, 1605, 2407, 2696, 2886, 2900
MfeI	CAATTG	1 cut(s)	2298
MflI	RGATCY	1 cut(s)	2900
MhlI	GDGCHC	5 cut(s)	20, 57, 186, 862, 2341
MlsI	TGGCCA	1 cut(s)	1859
MluNI	TGGCCA	1 cut(s)	1859
MlyI	GAGTC	2 cut(s)	883, 1295
MmeI	TCCRAC	2 cut(s)	115, 1956
Mox20I	TGGCCA	1 cut(s)	1859
Mph1103I	ATGCAT	1 cut(s)	300
MroXI	GAANNNNTTC	2 cut(s)	660, 726
MscI	TGGCCA	1 cut(s)	1859
MslI	CAYNNNNRTG	2 cut(s)	2232, 2670
Msp20I	TGGCCA	1 cut(s)	1859
MspA1I	CMGCKG	6 cut(s)	112, 776, 868, 1526, 1754, 1931
MspCI	CTTAAG	1 cut(s)	2078
MspI	CCGG	1 cut(s)	2293
MspR9I	CCNGG	2 cut(s)	561, 1814
MunI	CAATTG	1 cut(s)	2298
Mva1269I	GAATGC	1 cut(s)	1031
MvaI	CCWGG	2 cut(s)	561, 1814
MvnI	CGCG	2 cut(s)	1526, 2199
NdeI	CATATG	1 cut(s)	1255
NdeII	GATC	8 cut(s)	229, 323, 334, 1605, 2407, 2696, 2886, 2900
NlaIV	GGNNCC	4 cut(s)	139, 883, 1464, 2766
NmuCI	GTSAC	6 cut(s)	160, 214, 937, 1238, 2101, 2179
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	5 cut(s)	293, 536, 2237, 2372, 2884
NspV	TTCGAA	1 cut(s)	2024
PaeI	GCATGC	3 cut(s)	293, 2237, 2372
PagI	TCATGA	1 cut(s)	1837
PciI	ACATGT	1 cut(s)	532
PciSI	GCTCTTC	2 cut(s)	8, 1170
PctI	GAATGC	1 cut(s)	1031
PdmI	GAANNNNTTC	2 cut(s)	660, 726
PflFI	GACNNNGTC	2 cut(s)	2099, 2734
PflMI	CCANNNNNTGG	2 cut(s)	1819, 1975
PleI	GAGTC	2 cut(s)	883, 1295
PpsI	GAGTC	2 cut(s)	883, 1295
PscI	ACATGT	1 cut(s)	532
Psp6I	CCWGG	2 cut(s)	559, 1812
PspEI	GGTNACC	1 cut(s)	160
PspFI	CCCAGC	3 cut(s)	108, 868, 1266
PspGI	CCWGG	2 cut(s)	559, 1812
PspN4I	GGNNCC	4 cut(s)	139, 883, 1464, 2766
PspPI	GGNCC	2 cut(s)	137, 2526
PstI	CTGCAG	1 cut(s)	1936
PstNI	CAGNNNCTG	2 cut(s)	227, 1952
PsuI	RGATCY	1 cut(s)	2900
PsyI	GACNNNGTC	2 cut(s)	2099, 2734
PvuII	CAGCTG	5 cut(s)	112, 776, 868, 1754, 1931
RsaI	GTAC	6 cut(s)	747, 780, 785, 1405, 2045, 2496
RsaNI	GTAC	6 cut(s)	746, 779, 784, 1404, 2044, 2495
RseI	CAYNNNNRTG	2 cut(s)	2232, 2670
SacII	CCGCGG	1 cut(s)	1527
SalI	GTCGAC	1 cut(s)	175
SapI	GCTCTTC	2 cut(s)	8, 1170
Sau3AI	GATC	8 cut(s)	229, 323, 334, 1605, 2407, 2696, 2886, 2900
Sau96I	GGNCC	2 cut(s)	137, 2526
SchI	GAGTC	2 cut(s)	883, 1295
ScrFI	CCNGG	2 cut(s)	561, 1814
SduI	GDGCHC	5 cut(s)	20, 57, 186, 862, 2341
SexAI	ACCWGGT	1 cut(s)	559
SfcI	CTRYAG	1 cut(s)	1932
Sfr303I	CCGCGG	1 cut(s)	1527
SfuI	TTCGAA	1 cut(s)	2024
SgrBI	CCGCGG	1 cut(s)	1527
SinI	GGWCC	2 cut(s)	137, 2526
SmiMI	CAYNNNNRTG	2 cut(s)	2232, 2670
SmlI	CTYRAG	3 cut(s)	1712, 1787, 2078
SmoI	CTYRAG	3 cut(s)	1712, 1787, 2078
SphI	GCATGC	3 cut(s)	293, 2237, 2372
SspI	AATATT	1 cut(s)	2176
SspMI	CTAG	5 cut(s)	612, 675, 749, 2436, 2876
StyD4I	CCNGG	2 cut(s)	559, 1812
TaaI	ACNGT	7 cut(s)	70, 188, 254, 783, 791, 1408, 1807
TaiI	ACGT	6 cut(s)	865, 1265, 2344, 2656, 2738, 2909
TaqI	TCGA	8 cut(s)	176, 271, 1233, 2024, 2094, 2214, 2517, 2889
TatI	WGTACW	5 cut(s)	745, 778, 783, 1403, 2043
TauI	GCSGC	2 cut(s)	1221, 1529
TscAI	CASTG	9 cut(s)	62, 133, 796, 946, 1228, 1294, 1686, 1740, 2536
TseFI	GTSAC	6 cut(s)	160, 214, 937, 1238, 2101, 2179
TseI	GCWGC	8 cut(s)	1538, 1763, 1931, 2365, 2372, 2469, 2540, 2782
Tsp45I	GTSAC	6 cut(s)	160, 214, 937, 1238, 2101, 2179
TspGWI	ACGGA	3 cut(s)	194, 1587, 2470
TspRI	CASTG	9 cut(s)	62, 133, 796, 946, 1228, 1294, 1686, 1740, 2536
Tth111I	GACNNNGTC	2 cut(s)	2099, 2734
Van91I	CCANNNNNTGG	2 cut(s)	1819, 1975
Vha464I	CTTAAG	1 cut(s)	2078
VpaK11BI	GGWCC	2 cut(s)	137, 2526
XapI	RAATTY	6 cut(s)	364, 1000, 1040, 1779, 2011, 2920
XceI	RCATGY	5 cut(s)	293, 536, 2237, 2372, 2884
XcmI	CCANNNNNNNNNTGG	2 cut(s)	109, 2669
XmiI	GTMKAC	2 cut(s)	176, 1795
XmnI	GAANNNNTTC	2 cut(s)	660, 726
XspI	CTAG	5 cut(s)	612, 675, 749, 2436, 2876
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.