growth-regulating factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G22840 AT4G37740 |
| fragaria_vesca | FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671 |
| malus_domestica | MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1 |
| prunus_persica | Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1 |
| pyrus_communis | pycom02g15360 pycom08g06450 pycom15g26320 |
| rosa_chinensis | RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051 |
| rosa_laevigata | RLG00000010515 RLG00000010516 RLG00000017688 |
| rosa_multiflora | Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940 |
| rosa_rugosa | Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200 |
| rosa_samantha | Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100 |
| rosa_wichuraiana | Rw2G016360 Rw6G042700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1454 |
| AccII | CGCG | 3 cut(s) | 1124, 1258, 1274 |
| AcoI | YGGCCR | 1 cut(s) | 727 |
| AcsI | RAATTY | 2 cut(s) | 922, 1007 |
| AcuI | CTGAAG | 3 cut(s) | 264, 293, 795 |
| AcyI | GRCGYC | 2 cut(s) | 1293, 1440 |
| AfaI | GTAC | 3 cut(s) | 314, 665, 1392 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 245, 596, 597, 716, 1421 |
| AgsI | TTSAA | 5 cut(s) | 129, 702, 920, 1007, 1223 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1410 |
| AjnI | CCWGG | 2 cut(s) | 595, 1349 |
| AluBI | AGCT | 7 cut(s) | 133, 267, 424, 815, 1162, 1183, 1482 |
| AluI | AGCT | 7 cut(s) | 133, 267, 424, 815, 1162, 1183, 1482 |
| Alw21I | GWGCWC | 1 cut(s) | 638 |
| Alw26I | GTCTC | 1 cut(s) | 301 |
| Ama87I | CYCGRG | 4 cut(s) | 590, 637, 927, 1316 |
| AoxI | GGCC | 5 cut(s) | 688, 718, 727, 1151, 1546 |
| ApoI | RAATTY | 2 cut(s) | 922, 1007 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 279, 311 |
| AseI | ATTAAT | 1 cut(s) | 231 |
| AspS9I | GGNCC | 4 cut(s) | 395, 1152, 1376, 1547 |
| AsuC2I | CCSGG | 3 cut(s) | 48, 1317, 1318 |
| AsuHPI | GGTGA | 4 cut(s) | 119, 291, 1233, 1538 |
| AvaI | CYCGRG | 4 cut(s) | 590, 637, 927, 1316 |
| AvaII | GGWCC | 2 cut(s) | 395, 1376 |
| BalI | TGGCCA | 1 cut(s) | 729 |
| BamHI | GGATCC | 1 cut(s) | 586 |
| BanII | GRGCYC | 1 cut(s) | 554 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1085, 1117 |
| Bbv12I | GWGCWC | 1 cut(s) | 638 |
| BccI | CCATC | 9 cut(s) | 98, 146, 484, 540, 611, 702, 1216, 1505, 1523 |
| BciT130I | CCWGG | 2 cut(s) | 597, 1351 |
| BciVI | GTATCC | 1 cut(s) | 1332 |
| BcnI | CCSGG | 3 cut(s) | 48, 1317, 1318 |
| BcoDI | GTCTC | 1 cut(s) | 301 |
| BfaI | CTAG | 2 cut(s) | 425, 480 |
| BfmI | CTRYAG | 2 cut(s) | 316, 894 |
| BfuI | GTATCC | 1 cut(s) | 1332 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 726 |
| BglII | AGATCT | 1 cut(s) | 218 |
| BlpI | GCTNAGC | 1 cut(s) | 263 |
| BmcAI | AGTACT | 2 cut(s) | 314, 665 |
| Bme1390I | CCNGG | 5 cut(s) | 48, 597, 1317, 1318, 1351 |
| Bme18I | GGWCC | 2 cut(s) | 395, 1376 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1410 |
| BmeT110I | CYCGRG | 4 cut(s) | 590, 637, 927, 1316 |
| BmgT120I | GGNCC | 4 cut(s) | 395, 1152, 1376, 1547 |
| BmiI | GGNNCC | 4 cut(s) | 523, 588, 1206, 1426 |
| BmrFI | CCNGG | 5 cut(s) | 48, 597, 1317, 1318, 1351 |
| BmsI | GCATC | 2 cut(s) | 213, 813 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1365, 1397 |
| BpmI | CTGGAG | 1 cut(s) | 139 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 263 |
| BpuEI | CTTGAG | 1 cut(s) | 482 |
| BpuMI | CCSGG | 3 cut(s) | 48, 1317, 1318 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1343 |
| BsaHI | GRCGYC | 2 cut(s) | 1293, 1440 |
| BsaJI | CCNNGG | 5 cut(s) | 596, 1315, 1316, 1350, 1368 |
| BsaWI | WCCGGW | 2 cut(s) | 95, 572 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 33 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 245, 596, 597, 716, 1421 |
| Bse1I | ACTGG | 1 cut(s) | 1340 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1343 |
| BseBI | CCWGG | 2 cut(s) | 597, 1351 |
| BseDI | CCNNGG | 5 cut(s) | 596, 1315, 1316, 1350, 1368 |
| BseGI | GGATG | 3 cut(s) | 204, 551, 979 |
| BseJI | GATNNNNATC | 1 cut(s) | 1343 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 245, 596, 597, 716, 1421 |
| BseMII | CTCAG | 4 cut(s) | 206, 339, 425, 1193 |
| BseNI | ACTGG | 1 cut(s) | 1340 |
| Bsh1236I | CGCG | 3 cut(s) | 1124, 1258, 1274 |
| BshFI | GGCC | 5 cut(s) | 690, 720, 729, 1153, 1548 |
| BsiHKAI | GWGCWC | 1 cut(s) | 638 |
| BsiHKCI | CYCGRG | 4 cut(s) | 590, 637, 927, 1316 |
| BsiSI | CCGG | 5 cut(s) | 47, 96, 573, 610, 1317 |
| BslFI | GGGAC | 4 cut(s) | 452, 656, 820, 1398 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 245, 596, 597, 716, 1421 |
| BsmAI | GTCTC | 1 cut(s) | 301 |
| BsmFI | GGGAC | 4 cut(s) | 452, 656, 820, 1398 |
| BsnI | GGCC | 5 cut(s) | 690, 720, 729, 1153, 1548 |
| BsoBI | CYCGRG | 4 cut(s) | 590, 637, 927, 1316 |
| Bsp1286I | GDGCHC | 2 cut(s) | 554, 638 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 263 |
| Bsp19I | CCATGG | 1 cut(s) | 1368 |
| BspANI | GGCC | 5 cut(s) | 690, 720, 729, 1153, 1548 |
| BspCNI | CTCAG | 4 cut(s) | 207, 338, 424, 1192 |
| BspFNI | CGCG | 3 cut(s) | 1124, 1258, 1274 |
| BspHI | TCATGA | 1 cut(s) | 28 |
| BspLI | GGNNCC | 4 cut(s) | 523, 588, 1206, 1426 |
| BspQI | GCTCTTC | 1 cut(s) | 1152 |
| BsrI | ACTGG | 1 cut(s) | 1340 |
| BssECI | CCNNGG | 5 cut(s) | 596, 1315, 1316, 1350, 1368 |
| BssNI | GRCGYC | 2 cut(s) | 1293, 1440 |
| BssT1I | CCWWGG | 1 cut(s) | 1368 |
| Bst2UI | CCWGG | 2 cut(s) | 597, 1351 |
| Bst4CI | ACNGT | 5 cut(s) | 37, 317, 668, 966, 1526 |
| Bst6I | CTCTTC | 5 cut(s) | 166, 277, 1027, 1078, 1152 |
| BstACI | GRCGYC | 2 cut(s) | 1293, 1440 |
| BstC8I | GCNNGC | 2 cut(s) | 1122, 1489 |
| BstDEI | CTNAG | 5 cut(s) | 215, 263, 325, 411, 1179 |
| BstDSI | CCRYGG | 1 cut(s) | 1368 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 243, 714 |
| BstF5I | GGATG | 3 cut(s) | 204, 551, 979 |
| BstFNI | CGCG | 3 cut(s) | 1124, 1258, 1274 |
| BstMAI | GTCTC | 1 cut(s) | 301 |
| BstNI | CCWGG | 2 cut(s) | 597, 1351 |
| BstNSI | RCATGY | 2 cut(s) | 262, 367 |
| BstSCI | CCNGG | 5 cut(s) | 46, 595, 1315, 1316, 1349 |
| BstSFI | CTRYAG | 2 cut(s) | 316, 894 |
| BstUI | CGCG | 3 cut(s) | 1124, 1258, 1274 |
| BstX2I | RGATCY | 6 cut(s) | 4, 65, 92, 218, 586, 1537 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1350 |
| BstYI | RGATCY | 6 cut(s) | 4, 65, 92, 218, 586, 1537 |
| BsuI | GTATCC | 1 cut(s) | 1332 |
| BsuRI | GGCC | 5 cut(s) | 690, 720, 729, 1153, 1548 |
| BtgI | CCRYGG | 1 cut(s) | 1368 |
| BtgZI | GCGATG | 1 cut(s) | 836 |
| BtsCI | GGATG | 3 cut(s) | 204, 551, 979 |
| BtsIMutI | CAGTG | 1 cut(s) | 419 |
| Cac8I | GCNNGC | 2 cut(s) | 1122, 1489 |
| CciI | TCATGA | 1 cut(s) | 28 |
| Cfr13I | GGNCC | 4 cut(s) | 395, 1152, 1376, 1547 |
| Cfr9I | CCCGGG | 1 cut(s) | 1316 |
| CseI | GACGC | 3 cut(s) | 653, 1282, 1429 |
| Csp6I | GTAC | 3 cut(s) | 313, 664, 1391 |
| CviAII | CATG | 7 cut(s) | 29, 259, 364, 368, 583, 1282, 1369 |
| CviQI | GTAC | 3 cut(s) | 313, 664, 1391 |
| DdeI | CTNAG | 5 cut(s) | 215, 263, 325, 411, 1179 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1410 |
| EaeI | YGGCCR | 1 cut(s) | 727 |
| Eam1104I | CTCTTC | 5 cut(s) | 166, 277, 1027, 1078, 1152 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1410 |
| EarI | CTCTTC | 5 cut(s) | 166, 277, 1027, 1078, 1152 |
| Eco130I | CCWWGG | 1 cut(s) | 1368 |
| Eco24I | GRGCYC | 1 cut(s) | 554 |
| Eco47I | GGWCC | 2 cut(s) | 395, 1376 |
| Eco57I | CTGAAG | 3 cut(s) | 264, 293, 795 |
| Eco88I | CYCGRG | 4 cut(s) | 590, 637, 927, 1316 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 243, 714 |
| EcoO109I | RGGNCCY | 1 cut(s) | 395 |
| EcoRI | GAATTC | 1 cut(s) | 1007 |
| EcoRII | CCWGG | 2 cut(s) | 595, 1349 |
| EcoT14I | CCWWGG | 1 cut(s) | 1368 |
| EcoT22I | ATGCAT | 1 cut(s) | 369 |
| EcoT38I | GRGCYC | 1 cut(s) | 554 |
| ErhI | CCWWGG | 1 cut(s) | 1368 |
| FaeI | CATG | 7 cut(s) | 32, 262, 367, 371, 586, 1285, 1372 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1215, 1247, 1527, 1559 |
| FaqI | GGGAC | 4 cut(s) | 452, 656, 820, 1398 |
| FatI | CATG | 7 cut(s) | 28, 258, 363, 367, 582, 1281, 1368 |
| FauI | CCCGC | 3 cut(s) | 796, 1117, 1279 |
| FblI | GTMKAC | 1 cut(s) | 1454 |
| FokI | GGATG | 3 cut(s) | 191, 558, 966 |
| FriOI | GRGCYC | 1 cut(s) | 554 |
| FspBI | CTAG | 2 cut(s) | 425, 480 |
| GsuI | CTGGAG | 1 cut(s) | 139 |
| HaeIII | GGCC | 5 cut(s) | 690, 720, 729, 1153, 1548 |
| HapII | CCGG | 5 cut(s) | 47, 96, 573, 610, 1317 |
| HgaI | GACGC | 3 cut(s) | 653, 1282, 1429 |
| Hin1I | GRCGYC | 2 cut(s) | 1293, 1440 |
| Hin1II | CATG | 7 cut(s) | 32, 262, 367, 371, 586, 1285, 1372 |
| HincII | GTYRAC | 3 cut(s) | 381, 1297, 1455 |
| HindII | GTYRAC | 3 cut(s) | 381, 1297, 1455 |
| HinfI | GANTC | 8 cut(s) | 156, 409, 899, 1014, 1028, 1129, 1145, 1177 |
| HpaII | CCGG | 5 cut(s) | 47, 96, 573, 610, 1317 |
| HphI | GGTGA | 4 cut(s) | 119, 291, 1233, 1538 |
| Hpy166II | GTNNAC | 6 cut(s) | 381, 485, 671, 1297, 1379, 1455 |
| Hpy188I | TCNGA | 7 cut(s) | 65, 292, 835, 984, 1013, 1027, 1171 |
| Hpy8I | GTNNAC | 6 cut(s) | 381, 485, 671, 1297, 1379, 1455 |
| Hpy99I | CGWCG | 1 cut(s) | 1048 |
| HpyAV | CCTTC | 3 cut(s) | 710, 964, 1593 |
| HpyCH4III | ACNGT | 5 cut(s) | 37, 317, 668, 966, 1526 |
| HpyCH4V | TGCA | 4 cut(s) | 367, 1067, 1235, 1447 |
| HpyF3I | CTNAG | 5 cut(s) | 215, 263, 325, 411, 1179 |
| Hsp92I | GRCGYC | 2 cut(s) | 1293, 1440 |
| Hsp92II | CATG | 7 cut(s) | 32, 262, 367, 371, 586, 1285, 1372 |
| LguI | GCTCTTC | 1 cut(s) | 1152 |
| LmnI | GCTCC | 2 cut(s) | 1210, 1585 |
| LweI | GCATC | 2 cut(s) | 213, 813 |
| MaeI | CTAG | 2 cut(s) | 425, 480 |
| MaeIII | GTNAC | 3 cut(s) | 77, 578, 1032 |
| MflI | RGATCY | 6 cut(s) | 4, 65, 92, 218, 586, 1537 |
| MhlI | GDGCHC | 2 cut(s) | 554, 638 |
| MlsI | TGGCCA | 1 cut(s) | 729 |
| MluCI | AATT | 3 cut(s) | 535, 922, 1007 |
| MluNI | TGGCCA | 1 cut(s) | 729 |
| MlyI | GAGTC | 3 cut(s) | 403, 1008, 1171 |
| MmeI | TCCRAC | 2 cut(s) | 844, 1457 |
| Mox20I | TGGCCA | 1 cut(s) | 729 |
| Mph1103I | ATGCAT | 1 cut(s) | 369 |
| MscI | TGGCCA | 1 cut(s) | 729 |
| MseI | TTAA | 4 cut(s) | 231, 681, 1038, 1247 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1137, 1559 |
| Msp20I | TGGCCA | 1 cut(s) | 729 |
| MspA1I | CMGCKG | 5 cut(s) | 752, 779, 803, 815, 857 |
| MspI | CCGG | 5 cut(s) | 47, 96, 573, 610, 1317 |
| MspR9I | CCNGG | 5 cut(s) | 48, 597, 1317, 1318, 1351 |
| MvaI | CCWGG | 2 cut(s) | 597, 1351 |
| MvnI | CGCG | 3 cut(s) | 1124, 1258, 1274 |
| NciI | CCSGG | 3 cut(s) | 48, 1317, 1318 |
| NcoI | CCATGG | 1 cut(s) | 1368 |
| NlaIII | CATG | 7 cut(s) | 32, 262, 367, 371, 586, 1285, 1372 |
| NlaIV | GGNNCC | 4 cut(s) | 523, 588, 1206, 1426 |
| NmeAIII | GCCGAG | 2 cut(s) | 1362, 1463 |
| NsiI | ATGCAT | 1 cut(s) | 369 |
| NspI | RCATGY | 2 cut(s) | 262, 367 |
| PaeR7I | CTCGAG | 2 cut(s) | 637, 927 |
| PagI | TCATGA | 1 cut(s) | 28 |
| PciSI | GCTCTTC | 1 cut(s) | 1152 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 651 |
| PfeI | GAWTC | 5 cut(s) | 156, 899, 1028, 1129, 1145 |
| PleI | GAGTC | 3 cut(s) | 403, 1008, 1171 |
| PpsI | GAGTC | 3 cut(s) | 403, 1008, 1171 |
| PpuMI | RGGWCCY | 1 cut(s) | 395 |
| PshBI | ATTAAT | 1 cut(s) | 231 |
| Psp5II | RGGWCCY | 1 cut(s) | 395 |
| Psp6I | CCWGG | 2 cut(s) | 595, 1349 |
| PspGI | CCWGG | 2 cut(s) | 595, 1349 |
| PspN4I | GGNNCC | 4 cut(s) | 523, 588, 1206, 1426 |
| PspPI | GGNCC | 4 cut(s) | 395, 1152, 1376, 1547 |
| PspPPI | RGGWCCY | 1 cut(s) | 395 |
| PspXI | VCTCGAGB | 1 cut(s) | 637 |
| PsuI | RGATCY | 6 cut(s) | 4, 65, 92, 218, 586, 1537 |
| PvuII | CAGCTG | 1 cut(s) | 815 |
| RsaI | GTAC | 3 cut(s) | 314, 665, 1392 |
| RsaNI | GTAC | 3 cut(s) | 313, 664, 1391 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1137, 1559 |
| SalI | GTCGAC | 1 cut(s) | 1453 |
| SapI | GCTCTTC | 1 cut(s) | 1152 |
| SaqAI | TTAA | 4 cut(s) | 231, 681, 1038, 1247 |
| Sau96I | GGNCC | 4 cut(s) | 395, 1152, 1376, 1547 |
| ScaI | AGTACT | 2 cut(s) | 314, 665 |
| SchI | GAGTC | 3 cut(s) | 403, 1008, 1171 |
| ScrFI | CCNGG | 5 cut(s) | 48, 597, 1317, 1318, 1351 |
| SduI | GDGCHC | 2 cut(s) | 554, 638 |
| SfaNI | GCATC | 2 cut(s) | 213, 813 |
| SfcI | CTRYAG | 2 cut(s) | 316, 894 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 726 |
| Sfr274I | CTCGAG | 2 cut(s) | 637, 927 |
| SinI | GGWCC | 2 cut(s) | 395, 1376 |
| SlaI | CTCGAG | 2 cut(s) | 637, 927 |
| SmaI | CCCGGG | 1 cut(s) | 1318 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1137, 1559 |
| SmlI | CTYRAG | 3 cut(s) | 497, 637, 927 |
| SmoI | CTYRAG | 3 cut(s) | 497, 637, 927 |
| Sse9I | AATT | 3 cut(s) | 535, 922, 1007 |
| SspMI | CTAG | 2 cut(s) | 425, 480 |
| StyD4I | CCNGG | 5 cut(s) | 46, 595, 1315, 1316, 1349 |
| StyI | CCWWGG | 1 cut(s) | 1368 |
| TaaI | ACNGT | 5 cut(s) | 37, 317, 668, 966, 1526 |
| TaqI | TCGA | 6 cut(s) | 102, 638, 928, 968, 1143, 1454 |
| TasI | AATT | 3 cut(s) | 535, 922, 1007 |
| TatI | WGTACW | 2 cut(s) | 312, 663 |
| TauI | GCSGC | 6 cut(s) | 693, 749, 752, 770, 800, 857 |
| TfiI | GAWTC | 5 cut(s) | 156, 899, 1028, 1129, 1145 |
| Tru1I | TTAA | 4 cut(s) | 231, 681, 1038, 1247 |
| Tru9I | TTAA | 4 cut(s) | 231, 681, 1038, 1247 |
| TscAI | CASTG | 1 cut(s) | 419 |
| TspDTI | ATGAA | 7 cut(s) | 45, 185, 365, 393, 548, 971, 1577 |
| TspGWI | ACGGA | 1 cut(s) | 1032 |
| TspMI | CCCGGG | 1 cut(s) | 1316 |
| TspRI | CASTG | 1 cut(s) | 419 |
| VpaK11BI | GGWCC | 2 cut(s) | 395, 1376 |
| VspI | ATTAAT | 1 cut(s) | 231 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 243, 714 |
| XapI | RAATTY | 2 cut(s) | 922, 1007 |
| XceI | RCATGY | 2 cut(s) | 262, 367 |
| XhoI | CTCGAG | 2 cut(s) | 637, 927 |
| XmaI | CCCGGG | 1 cut(s) | 1316 |
| XmiI | GTMKAC | 1 cut(s) | 1454 |
| XspI | CTAG | 2 cut(s) | 425, 480 |
| ZrmI | AGTACT | 2 cut(s) | 314, 665 |
| Zsp2I | ATGCAT | 1 cut(s) | 369 |