AT2G22840

growth-regulating factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
9728480 .. 9731301
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22840.1

Sequence Viewer

Length: 1593 bp
ATGGATCTTGGAGTTCGTGTTTCTGGTCATGAAACCGTTTCTTCTCCGGGTCAAACTGAACTCGGATCTGGTTTCAGTAACAAGCAAGAAAGATCCGGTTTCGATGGTGAAGATTGCTGGAGAAGTTCAAAGCTCTCACGAACATCAACTGATGGATTCTCTTCTTCCCCTGCCTCTGCTAAAACGCTGTCGTTTCATCAAGGCATCCCTTTACTGAGATCTACCACTATTAATGATCCTCGTAAAGGACAAGAACACATGCTTAGCTTCTCTTCTGCTTCAGGCAAATCAGATGTCTCACCTTATCTTCAGTACTGTAGAAACTCAGGATATGGTTTAGGAGGAATGATGAACACAAGCAACATGCATGGAAACTTGTTGACAGGAGTAAAAGGACCTTTTTCATTGACTCAGTGGGCAGAGCTAGAGCAACAGGCGTTGATCTATAAGTATATCACAGCCAATGTCCCTGTTCCATCTAGTTTACTTCTCTCTCTCAAGAAATCTTTTTTCCCTTATGGTTCCTTGCCTCCTAATTCTTTTGGATGGGGCTCTTTTCATCTGGGCTTTTCCGGTGGTAACATGGATCCCGAGCCAGGGAGATGTCGCCGGACAGATGGAAAGAAATGGCGGTGCTCGAGGGACGCTGTTCCCGATCAAAAGTACTGTGAACGACATATTAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAAATGGCCACAATACTAATGCTGCCGCCGCTGCTTCTGCTGCTGCCGCTTCTACCGCTGCTGCTGTGTCCAAAGCGGCAGCGGGGACTTCAGCTGTTGCGATGCGTGGATCAGATAATAACAATAGCCTTGCCGCTGCTGTTGGAACACAACATCATACCAATAATCAATCTACAGATTCTTTGGCTAACAGAGTTCAAAATTCTCGAGGGGCTTCGGTTTTTCCTGCCACGATGAACTTACAGTCGAAGGAAACTCATCCGAAACAAAGCAATAATCCCTTTGAATTCGGACTCATCTCTTCTGATTCGTTACTTAATCCGTCGCATAAACAAGCCTCGTATGCAACCTCTTCCAAAGGCTTTGGATCGTATCTTGACTTCGGCAACCAAGCCAAGCACGCGGGGAATCACAACAATGTCGATTCTTGGCCCGAAGAGCTGAAATCGGATTGGACTCAGCTCTCAATGTCAATCCCTATGGCTCCATCTTCCCCTGTTCAAGATAAACTTGCACTCTCACCTTTAAGGTTATCGCGTGAGTTTGACCCCGCGATCCACATGGGATTAGGCGTCAACACCGAGTTTCTTGACCCCGGGAAAAAGACGAATAACTGGATACCAATCTCCTGGGGTAATAACAACTCCATGGGAGGTCCACTCGGCGAGGTACTAAACAGCACGACCAATAGTCCCAAGTTTGGTTCCTCTCCAACAGGCGTCTTGCAAAAGTCGACATTTGGTTCTCTTTCTAACAGCAGCTCGGCAAGCAGCACCATCATTGGCGATAACAACAATAAGAACGGTGATGGAAAAGATCCGCTTGGCCCGACCACGCTGATGAATACTTCTGCTACTGCTCCTTCTCTGTGA

Protein Analysis

530

Amino Acids

56.4

Weight (kDa)

9.27

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 133 - 166 6.6e-13 QLQ
WRC PF08879 197 - 239 4.1e-21 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1454
AccII CGCG 3 cut(s) 1124, 1258, 1274
AcoI YGGCCR 1 cut(s) 727
AcsI RAATTY 2 cut(s) 922, 1007
AcuI CTGAAG 3 cut(s) 264, 293, 795
AcyI GRCGYC 2 cut(s) 1293, 1440
AfaI GTAC 3 cut(s) 314, 665, 1392
AfiI CCNNNNNNNGG 5 cut(s) 245, 596, 597, 716, 1421
AgsI TTSAA 5 cut(s) 129, 702, 920, 1007, 1223
AhdI GACNNNNNGTC 1 cut(s) 1410
AjnI CCWGG 2 cut(s) 595, 1349
AluBI AGCT 7 cut(s) 133, 267, 424, 815, 1162, 1183, 1482
AluI AGCT 7 cut(s) 133, 267, 424, 815, 1162, 1183, 1482
Alw21I GWGCWC 1 cut(s) 638
Alw26I GTCTC 1 cut(s) 301
Ama87I CYCGRG 4 cut(s) 590, 637, 927, 1316
AoxI GGCC 5 cut(s) 688, 718, 727, 1151, 1546
ApoI RAATTY 2 cut(s) 922, 1007
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AseI ATTAAT 1 cut(s) 231
AspS9I GGNCC 4 cut(s) 395, 1152, 1376, 1547
AsuC2I CCSGG 3 cut(s) 48, 1317, 1318
AsuHPI GGTGA 4 cut(s) 119, 291, 1233, 1538
AvaI CYCGRG 4 cut(s) 590, 637, 927, 1316
AvaII GGWCC 2 cut(s) 395, 1376
BalI TGGCCA 1 cut(s) 729
BamHI GGATCC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 554
BarI GAAGNNNNNNTAC 2 cut(s) 1085, 1117
Bbv12I GWGCWC 1 cut(s) 638
BccI CCATC 9 cut(s) 98, 146, 484, 540, 611, 702, 1216, 1505, 1523
BciT130I CCWGG 2 cut(s) 597, 1351
BciVI GTATCC 1 cut(s) 1332
BcnI CCSGG 3 cut(s) 48, 1317, 1318
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 2 cut(s) 425, 480
BfmI CTRYAG 2 cut(s) 316, 894
BfuI GTATCC 1 cut(s) 1332
BglI GCCNNNNNGGC 1 cut(s) 726
BglII AGATCT 1 cut(s) 218
BlpI GCTNAGC 1 cut(s) 263
BmcAI AGTACT 2 cut(s) 314, 665
Bme1390I CCNGG 5 cut(s) 48, 597, 1317, 1318, 1351
Bme18I GGWCC 2 cut(s) 395, 1376
BmeRI GACNNNNNGTC 1 cut(s) 1410
BmeT110I CYCGRG 4 cut(s) 590, 637, 927, 1316
BmgT120I GGNCC 4 cut(s) 395, 1152, 1376, 1547
BmiI GGNNCC 4 cut(s) 523, 588, 1206, 1426
BmrFI CCNGG 5 cut(s) 48, 597, 1317, 1318, 1351
BmsI GCATC 2 cut(s) 213, 813
BplI GAGNNNNNCTC 2 cut(s) 1365, 1397
BpmI CTGGAG 1 cut(s) 139
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 482
BpuMI CCSGG 3 cut(s) 48, 1317, 1318
BsaBI GATNNNNATC 1 cut(s) 1343
BsaHI GRCGYC 2 cut(s) 1293, 1440
BsaJI CCNNGG 5 cut(s) 596, 1315, 1316, 1350, 1368
BsaWI WCCGGW 2 cut(s) 95, 572
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 5 cut(s) 245, 596, 597, 716, 1421
Bse1I ACTGG 1 cut(s) 1340
Bse8I GATNNNNATC 1 cut(s) 1343
BseBI CCWGG 2 cut(s) 597, 1351
BseDI CCNNGG 5 cut(s) 596, 1315, 1316, 1350, 1368
BseGI GGATG 3 cut(s) 204, 551, 979
BseJI GATNNNNATC 1 cut(s) 1343
BseLI CCNNNNNNNGG 5 cut(s) 245, 596, 597, 716, 1421
BseMII CTCAG 4 cut(s) 206, 339, 425, 1193
BseNI ACTGG 1 cut(s) 1340
Bsh1236I CGCG 3 cut(s) 1124, 1258, 1274
BshFI GGCC 5 cut(s) 690, 720, 729, 1153, 1548
BsiHKAI GWGCWC 1 cut(s) 638
BsiHKCI CYCGRG 4 cut(s) 590, 637, 927, 1316
BsiSI CCGG 5 cut(s) 47, 96, 573, 610, 1317
BslFI GGGAC 4 cut(s) 452, 656, 820, 1398
BslI CCNNNNNNNGG 5 cut(s) 245, 596, 597, 716, 1421
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 4 cut(s) 452, 656, 820, 1398
BsnI GGCC 5 cut(s) 690, 720, 729, 1153, 1548
BsoBI CYCGRG 4 cut(s) 590, 637, 927, 1316
Bsp1286I GDGCHC 2 cut(s) 554, 638
Bsp1720I GCTNAGC 1 cut(s) 263
Bsp19I CCATGG 1 cut(s) 1368
BspANI GGCC 5 cut(s) 690, 720, 729, 1153, 1548
BspCNI CTCAG 4 cut(s) 207, 338, 424, 1192
BspFNI CGCG 3 cut(s) 1124, 1258, 1274
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 4 cut(s) 523, 588, 1206, 1426
BspQI GCTCTTC 1 cut(s) 1152
BsrI ACTGG 1 cut(s) 1340
BssECI CCNNGG 5 cut(s) 596, 1315, 1316, 1350, 1368
BssNI GRCGYC 2 cut(s) 1293, 1440
BssT1I CCWWGG 1 cut(s) 1368
Bst2UI CCWGG 2 cut(s) 597, 1351
Bst4CI ACNGT 5 cut(s) 37, 317, 668, 966, 1526
Bst6I CTCTTC 5 cut(s) 166, 277, 1027, 1078, 1152
BstACI GRCGYC 2 cut(s) 1293, 1440
BstC8I GCNNGC 2 cut(s) 1122, 1489
BstDEI CTNAG 5 cut(s) 215, 263, 325, 411, 1179
BstDSI CCRYGG 1 cut(s) 1368
BstENI CCTNNNNNAGG 2 cut(s) 243, 714
BstF5I GGATG 3 cut(s) 204, 551, 979
BstFNI CGCG 3 cut(s) 1124, 1258, 1274
BstMAI GTCTC 1 cut(s) 301
BstNI CCWGG 2 cut(s) 597, 1351
BstNSI RCATGY 2 cut(s) 262, 367
BstSCI CCNGG 5 cut(s) 46, 595, 1315, 1316, 1349
BstSFI CTRYAG 2 cut(s) 316, 894
BstUI CGCG 3 cut(s) 1124, 1258, 1274
BstX2I RGATCY 6 cut(s) 4, 65, 92, 218, 586, 1537
BstXI CCANNNNNNTGG 1 cut(s) 1350
BstYI RGATCY 6 cut(s) 4, 65, 92, 218, 586, 1537
BsuI GTATCC 1 cut(s) 1332
BsuRI GGCC 5 cut(s) 690, 720, 729, 1153, 1548
BtgI CCRYGG 1 cut(s) 1368
BtgZI GCGATG 1 cut(s) 836
BtsCI GGATG 3 cut(s) 204, 551, 979
BtsIMutI CAGTG 1 cut(s) 419
Cac8I GCNNGC 2 cut(s) 1122, 1489
CciI TCATGA 1 cut(s) 28
Cfr13I GGNCC 4 cut(s) 395, 1152, 1376, 1547
Cfr9I CCCGGG 1 cut(s) 1316
CseI GACGC 3 cut(s) 653, 1282, 1429
Csp6I GTAC 3 cut(s) 313, 664, 1391
CviAII CATG 7 cut(s) 29, 259, 364, 368, 583, 1282, 1369
CviQI GTAC 3 cut(s) 313, 664, 1391
DdeI CTNAG 5 cut(s) 215, 263, 325, 411, 1179
DriI GACNNNNNGTC 1 cut(s) 1410
EaeI YGGCCR 1 cut(s) 727
Eam1104I CTCTTC 5 cut(s) 166, 277, 1027, 1078, 1152
Eam1105I GACNNNNNGTC 1 cut(s) 1410
EarI CTCTTC 5 cut(s) 166, 277, 1027, 1078, 1152
Eco130I CCWWGG 1 cut(s) 1368
Eco24I GRGCYC 1 cut(s) 554
Eco47I GGWCC 2 cut(s) 395, 1376
Eco57I CTGAAG 3 cut(s) 264, 293, 795
Eco88I CYCGRG 4 cut(s) 590, 637, 927, 1316
EcoNI CCTNNNNNAGG 2 cut(s) 243, 714
EcoO109I RGGNCCY 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 1007
EcoRII CCWGG 2 cut(s) 595, 1349
EcoT14I CCWWGG 1 cut(s) 1368
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 1368
FaeI CATG 7 cut(s) 32, 262, 367, 371, 586, 1285, 1372
FalI AAGNNNNNCTT 4 cut(s) 1215, 1247, 1527, 1559
FaqI GGGAC 4 cut(s) 452, 656, 820, 1398
FatI CATG 7 cut(s) 28, 258, 363, 367, 582, 1281, 1368
FauI CCCGC 3 cut(s) 796, 1117, 1279
FblI GTMKAC 1 cut(s) 1454
FokI GGATG 3 cut(s) 191, 558, 966
FriOI GRGCYC 1 cut(s) 554
FspBI CTAG 2 cut(s) 425, 480
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 5 cut(s) 690, 720, 729, 1153, 1548
HapII CCGG 5 cut(s) 47, 96, 573, 610, 1317
HgaI GACGC 3 cut(s) 653, 1282, 1429
Hin1I GRCGYC 2 cut(s) 1293, 1440
Hin1II CATG 7 cut(s) 32, 262, 367, 371, 586, 1285, 1372
HincII GTYRAC 3 cut(s) 381, 1297, 1455
HindII GTYRAC 3 cut(s) 381, 1297, 1455
HinfI GANTC 8 cut(s) 156, 409, 899, 1014, 1028, 1129, 1145, 1177
HpaII CCGG 5 cut(s) 47, 96, 573, 610, 1317
HphI GGTGA 4 cut(s) 119, 291, 1233, 1538
Hpy166II GTNNAC 6 cut(s) 381, 485, 671, 1297, 1379, 1455
Hpy188I TCNGA 7 cut(s) 65, 292, 835, 984, 1013, 1027, 1171
Hpy8I GTNNAC 6 cut(s) 381, 485, 671, 1297, 1379, 1455
Hpy99I CGWCG 1 cut(s) 1048
HpyAV CCTTC 3 cut(s) 710, 964, 1593
HpyCH4III ACNGT 5 cut(s) 37, 317, 668, 966, 1526
HpyCH4V TGCA 4 cut(s) 367, 1067, 1235, 1447
HpyF3I CTNAG 5 cut(s) 215, 263, 325, 411, 1179
Hsp92I GRCGYC 2 cut(s) 1293, 1440
Hsp92II CATG 7 cut(s) 32, 262, 367, 371, 586, 1285, 1372
LguI GCTCTTC 1 cut(s) 1152
LmnI GCTCC 2 cut(s) 1210, 1585
LweI GCATC 2 cut(s) 213, 813
MaeI CTAG 2 cut(s) 425, 480
MaeIII GTNAC 3 cut(s) 77, 578, 1032
MflI RGATCY 6 cut(s) 4, 65, 92, 218, 586, 1537
MhlI GDGCHC 2 cut(s) 554, 638
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 3 cut(s) 535, 922, 1007
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 3 cut(s) 403, 1008, 1171
MmeI TCCRAC 2 cut(s) 844, 1457
Mox20I TGGCCA 1 cut(s) 729
Mph1103I ATGCAT 1 cut(s) 369
MscI TGGCCA 1 cut(s) 729
MseI TTAA 4 cut(s) 231, 681, 1038, 1247
MslI CAYNNNNRTG 2 cut(s) 1137, 1559
Msp20I TGGCCA 1 cut(s) 729
MspA1I CMGCKG 5 cut(s) 752, 779, 803, 815, 857
MspI CCGG 5 cut(s) 47, 96, 573, 610, 1317
MspR9I CCNGG 5 cut(s) 48, 597, 1317, 1318, 1351
MvaI CCWGG 2 cut(s) 597, 1351
MvnI CGCG 3 cut(s) 1124, 1258, 1274
NciI CCSGG 3 cut(s) 48, 1317, 1318
NcoI CCATGG 1 cut(s) 1368
NlaIII CATG 7 cut(s) 32, 262, 367, 371, 586, 1285, 1372
NlaIV GGNNCC 4 cut(s) 523, 588, 1206, 1426
NmeAIII GCCGAG 2 cut(s) 1362, 1463
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 2 cut(s) 262, 367
PaeR7I CTCGAG 2 cut(s) 637, 927
PagI TCATGA 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 1152
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PfeI GAWTC 5 cut(s) 156, 899, 1028, 1129, 1145
PleI GAGTC 3 cut(s) 403, 1008, 1171
PpsI GAGTC 3 cut(s) 403, 1008, 1171
PpuMI RGGWCCY 1 cut(s) 395
PshBI ATTAAT 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 2 cut(s) 595, 1349
PspGI CCWGG 2 cut(s) 595, 1349
PspN4I GGNNCC 4 cut(s) 523, 588, 1206, 1426
PspPI GGNCC 4 cut(s) 395, 1152, 1376, 1547
PspPPI RGGWCCY 1 cut(s) 395
PspXI VCTCGAGB 1 cut(s) 637
PsuI RGATCY 6 cut(s) 4, 65, 92, 218, 586, 1537
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 3 cut(s) 314, 665, 1392
RsaNI GTAC 3 cut(s) 313, 664, 1391
RseI CAYNNNNRTG 2 cut(s) 1137, 1559
SalI GTCGAC 1 cut(s) 1453
SapI GCTCTTC 1 cut(s) 1152
SaqAI TTAA 4 cut(s) 231, 681, 1038, 1247
Sau96I GGNCC 4 cut(s) 395, 1152, 1376, 1547
ScaI AGTACT 2 cut(s) 314, 665
SchI GAGTC 3 cut(s) 403, 1008, 1171
ScrFI CCNGG 5 cut(s) 48, 597, 1317, 1318, 1351
SduI GDGCHC 2 cut(s) 554, 638
SfaNI GCATC 2 cut(s) 213, 813
SfcI CTRYAG 2 cut(s) 316, 894
SfiI GGCCNNNNNGGCC 1 cut(s) 726
Sfr274I CTCGAG 2 cut(s) 637, 927
SinI GGWCC 2 cut(s) 395, 1376
SlaI CTCGAG 2 cut(s) 637, 927
SmaI CCCGGG 1 cut(s) 1318
SmiMI CAYNNNNRTG 2 cut(s) 1137, 1559
SmlI CTYRAG 3 cut(s) 497, 637, 927
SmoI CTYRAG 3 cut(s) 497, 637, 927
Sse9I AATT 3 cut(s) 535, 922, 1007
SspMI CTAG 2 cut(s) 425, 480
StyD4I CCNGG 5 cut(s) 46, 595, 1315, 1316, 1349
StyI CCWWGG 1 cut(s) 1368
TaaI ACNGT 5 cut(s) 37, 317, 668, 966, 1526
TaqI TCGA 6 cut(s) 102, 638, 928, 968, 1143, 1454
TasI AATT 3 cut(s) 535, 922, 1007
TatI WGTACW 2 cut(s) 312, 663
TauI GCSGC 6 cut(s) 693, 749, 752, 770, 800, 857
TfiI GAWTC 5 cut(s) 156, 899, 1028, 1129, 1145
Tru1I TTAA 4 cut(s) 231, 681, 1038, 1247
Tru9I TTAA 4 cut(s) 231, 681, 1038, 1247
TscAI CASTG 1 cut(s) 419
TspDTI ATGAA 7 cut(s) 45, 185, 365, 393, 548, 971, 1577
TspGWI ACGGA 1 cut(s) 1032
TspMI CCCGGG 1 cut(s) 1316
TspRI CASTG 1 cut(s) 419
VpaK11BI GGWCC 2 cut(s) 395, 1376
VspI ATTAAT 1 cut(s) 231
XagI CCTNNNNNAGG 2 cut(s) 243, 714
XapI RAATTY 2 cut(s) 922, 1007
XceI RCATGY 2 cut(s) 262, 367
XhoI CTCGAG 2 cut(s) 637, 927
XmaI CCCGGG 1 cut(s) 1316
XmiI GTMKAC 1 cut(s) 1454
XspI CTAG 2 cut(s) 425, 480
ZrmI AGTACT 2 cut(s) 314, 665
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.