Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001679

Physical Location & Seq

Genomic Coordinates Forward (+)

2282803 .. 2283390

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00158940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATCCGGCCGAGGAGATCAACCGATGAGGTGATGTCGACGTCGTTTCGGGCAAATGTACCGTTCTCGTGGGAGAAGAAGCCCGGGACGTCCAAGCTCAAACCATCTTCTTCCGATCGTCGTAGTTTGGATCACTACTTCACGACCACGACGTCGTCCCTAAAGCTGATACCTCCTCCAGCTCGTCTCTCATCGCAAATTTCCATCAGTAGTACTGCTGGTAACCGGCAGACCCGTGGCGGCCCTTGTCTATGCTCCAGTGTTGATGTTCAGCCATCTGTTGCTACGTTTCGAAACCCATTCGGATTAACGGGTGGTGCTAGTCCTACTACTGCTAAAAATAATCGTCTTCAAGAAGACCCATTTCTTGCAGCTTTCATCAAATGCACCCAGATGCACGGCTCCAGAGTCACTAATAGTGGCAAAAGGTATGCAGCTGATAGTAAACATTATGCAGCAGCTAGGGTTTCTGCCGGGAAGAAAACCACCCTGTTCTCGATGTTTACTAGTAGTTTCTCATGTAAGTACTCCTCCGCTGTTAGGGACGACAATATTGTAGTTGCAAGGCCACGCAAATCTCCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.29

Weight (kDa)

10.71

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22840 AT4G37740
fragaria_vesca	FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671
malus_domestica	MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1
prunus_persica	Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1
pyrus_communis	pycom02g15360 pycom08g06450 pycom15g26320
rosa_chinensis	RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051
rosa_laevigata	RLG00000010515 RLG00000010516 RLG00000017688
rosa_multiflora	Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012
rosa_roxburghii	Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200
rosa_samantha	Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100
rosa_wichuraiana	Rw2G016360 Rw6G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AatII	GACGTC	3 cut(s)	44, 92, 155
AccI	GTMKAC	1 cut(s)	38
AciI	CCGC	2 cut(s)	240, 534
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	198
AcyI	GRCGYC	3 cut(s)	41, 89, 152
AfaI	GTAC	3 cut(s)	60, 214, 527
AfiI	CCNNNNNNNGG	1 cut(s)	540
AgsI	TTSAA	1 cut(s)	353
AhlI	ACTAGT	1 cut(s)	506
AluBI	AGCT	6 cut(s)	97, 166, 182, 374, 437, 461
AluI	AGCT	6 cut(s)	97, 166, 182, 374, 437, 461
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	3 cut(s)	8, 241, 566
ApeKI	GCWGC	4 cut(s)	371, 434, 455, 458
ApoI	RAATTY	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	3 cut(s)	84, 85, 475
AsuHPI	GGTGA	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	83
BauI	CACGAG	1 cut(s)	67
BbsI	GAAGAC	2 cut(s)	341, 363
BbvI	GCAGC	4 cut(s)	383, 446, 467, 470
BccI	CCATC	3 cut(s)	112, 212, 283
BceAI	ACGGC	1 cut(s)	415
BcnI	CCSGG	3 cut(s)	84, 85, 475
BcoDI	GTCTC	1 cut(s)	191
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	3 cut(s)	321, 462, 507
BisI	GCNGC	5 cut(s)	241, 372, 435, 456, 459
BlsI	GCNGC	5 cut(s)	242, 373, 436, 457, 460
BmcAI	AGTACT	2 cut(s)	214, 527
Bme1390I	CCNGG	3 cut(s)	84, 85, 475
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	3 cut(s)	84, 85, 475
BmsI	GCATC	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	341, 363
BpmI	CTGGAG	3 cut(s)	162, 241, 388
Bpu14I	TTCGAA	1 cut(s)	292
BpuMI	CCSGG	3 cut(s)	84, 85, 475
BsaHI	GRCGYC	3 cut(s)	41, 89, 152
BsaJI	CCNNGG	3 cut(s)	11, 83, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	258
BseDI	CCNNGG	3 cut(s)	11, 83, 235
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	3 cut(s)	28, 165, 520
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	383, 446, 467, 470
Bsh1285I	CGRYCG	2 cut(s)	11, 118
BshFI	GGCC	3 cut(s)	10, 243, 568
BsiEI	CGRYCG	2 cut(s)	11, 118
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	4 cut(s)	7, 84, 226, 474
BslFI	GGGAC	3 cut(s)	100, 142, 557
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	3 cut(s)	100, 142, 557
BsnI	GGCC	3 cut(s)	10, 243, 568
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	3, 17, 115, 130
BspACI	CCGC	2 cut(s)	240, 534
BspANI	GGCC	3 cut(s)	10, 243, 568
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	258
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	3 cut(s)	11, 83, 235
BssMI	GATC	4 cut(s)	3, 17, 115, 130
BssNI	GRCGYC	3 cut(s)	41, 89, 152
BssSI	CACGAG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	63
BstACI	GRCGYC	3 cut(s)	41, 89, 152
BstBI	TTCGAA	1 cut(s)	292
BstDSI	CCRYGG	1 cut(s)	235
BstEII	GGTNACC	1 cut(s)	221
BstKTI	GATC	4 cut(s)	6, 20, 118, 133
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	3, 17, 115, 130
BstMCI	CGRYCG	2 cut(s)	11, 118
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	3 cut(s)	82, 83, 473
BstV1I	GCAGC	4 cut(s)	383, 446, 467, 470
BstV2I	GAAGAC	2 cut(s)	341, 363
BstZI	CGGCCG	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	10, 243, 568
BtgI	CCRYGG	1 cut(s)	235
BtgZI	GCGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	242
Cfr9I	CCCGGG	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	59, 213, 526
CviAII	CATG	1 cut(s)	519
CviQI	GTAC	3 cut(s)	59, 213, 526
DpnI	GATC	4 cut(s)	5, 19, 117, 132
DpnII	GATC	4 cut(s)	3, 17, 115, 130
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
EclXI	CGGCCG	1 cut(s)	8
Eco52I	CGGCCG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	83
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	1 cut(s)	522
FaiI	YATR	4 cut(s)	253, 432, 453, 520
FaqI	GGGAC	3 cut(s)	100, 142, 557
FatI	CATG	1 cut(s)	518
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	241, 372, 435, 456, 459
Fsp4HI	GCNGC	5 cut(s)	241, 372, 435, 456, 459
FspBI	CTAG	3 cut(s)	321, 462, 507
GluI	GCNGC	5 cut(s)	241, 372, 435, 456, 459
GsuI	CTGGAG	3 cut(s)	162, 241, 388
HaeIII	GGCC	3 cut(s)	10, 243, 568
HapII	CCGG	4 cut(s)	7, 84, 226, 474
Hin1I	GRCGYC	3 cut(s)	41, 89, 152
Hin1II	CATG	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	1 cut(s)	408
HpaII	CCGG	4 cut(s)	7, 84, 226, 474
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	3 cut(s)	39, 446, 504
Hpy188I	TCNGA	2 cut(s)	115, 305
Hpy188III	TCNNGA	4 cut(s)	142, 353, 405, 496
Hpy8I	GTNNAC	3 cut(s)	39, 446, 504
Hpy99I	CGWCG	5 cut(s)	43, 46, 123, 154, 157
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	4 cut(s)	41, 89, 152, 287
HpyCH4V	TGCA	6 cut(s)	371, 387, 397, 434, 455, 563
HpySE526I	ACGT	4 cut(s)	41, 89, 152, 287
Hsp92I	GRCGYC	3 cut(s)	41, 89, 152
Hsp92II	CATG	1 cut(s)	522
Kzo9I	GATC	4 cut(s)	3, 17, 115, 130
LmnI	GCTCC	2 cut(s)	260, 407
Lsp1109I	GCAGC	4 cut(s)	383, 446, 467, 470
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	3 cut(s)	321, 462, 507
MaeII	ACGT	4 cut(s)	41, 89, 152, 287
MaeIII	GTNAC	2 cut(s)	221, 409
MalI	GATC	4 cut(s)	5, 19, 117, 132
MboI	GATC	4 cut(s)	3, 17, 115, 130
MboII	GAAGA	6 cut(s)	88, 99, 102, 341, 368, 490
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	5 cut(s)	6, 22, 183, 186, 541
MseI	TTAA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	2 cut(s)	437, 536
MspI	CCGG	4 cut(s)	7, 84, 226, 474
MspR9I	CCNGG	3 cut(s)	84, 85, 475
NciI	CCSGG	3 cut(s)	84, 85, 475
NdeII	GATC	4 cut(s)	3, 17, 115, 130
NlaIII	CATG	1 cut(s)	522
NlaIV	GGNNCC	1 cut(s)	403
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	409
NspV	TTCGAA	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	5 cut(s)	242, 373, 436, 457, 460
Ple19I	CGATCG	1 cut(s)	118
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PspEI	GGTNACC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	154
PvuI	CGATCG	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	3 cut(s)	60, 214, 527
RsaNI	GTAC	3 cut(s)	59, 213, 526
RseI	CAYNNNNRTG	1 cut(s)	392
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	5 cut(s)	241, 372, 435, 456, 459
Sau3AI	GATC	4 cut(s)	3, 17, 115, 130
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	2 cut(s)	214, 527
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	3 cut(s)	84, 85, 475
SfaNI	GCATC	1 cut(s)	384
SfuI	TTCGAA	1 cut(s)	292
SmaI	CCCGGG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	392
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	2 cut(s)	240, 534
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	3 cut(s)	321, 462, 507
StyD4I	CCNGG	3 cut(s)	82, 83, 473
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	4 cut(s)	44, 92, 155, 290
TaqI	TCGA	3 cut(s)	38, 292, 497
TasI	AATT	1 cut(s)	198
TatI	WGTACW	2 cut(s)	212, 525
TauI	GCSGC	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	4 cut(s)	371, 434, 455, 458
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	367
TspMI	CCCGGG	1 cut(s)	83
TspRI	CASTG	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	198
XmaI	CCCGGG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	3 cut(s)	321, 462, 507
ZraI	GACGTC	3 cut(s)	42, 90, 153
ZrmI	AGTACT	2 cut(s)	214, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.