Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001679

Physical Location & Seq

Genomic Coordinates Forward (+)

36302980 .. 36306676

Gene Structure 3697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G419000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGGATTTTGGGGTGGTGGGTTTTGATGGGTTGGGGGGTGCAGCAGCAGGAACTGGTTTTGCTTCTCTTGCTAGTTCGTCATCAGATCAGGAGACCAAGCACAAATGGTACGGATCTGGGTTCCACAAGCAGGGGAGATCTGCAGGCACTGTTGAAGAAGATTGGAGAAGCTCAAAACTGCCCAAGACTGATGATTTTCTTTCAGCTTCCAAGACAATGCCTAACAACAGCACTCATTTCTCTGATGGGCAGCAATTGCTGAGCTTCTCTAATTCTCCCAATTCGGAAGCTGTTTTGGTTGACAAGAGCACTCAGAATGCCTCATTGCCTTACTTTCACCAACCATTATCTGCTTACAACAGAAGTACAGGCCACAATACTGGGAGCTTCAATGGTGCTGCCATGCACTGGGATATAGCAGGGGTCAGAGGGCCATTCACTCCATCTCAATGGATGGAGTTAGAACACCAGGCCTTGATCTACAAATACATTACTGCAAATGTGCCTATACCATCTAATCTGCTCATCCCAATAAAGAAGGCCCTTGATTCTGCCTTTCCAAATGGACTTCCGAGGCCCAATACATTGGGATGGGGTTCTATCCATTTGGGATTCTCCAACAACACTGATCCTGAGCCAGGAAGGTGTCGTAGGACTGATGGGAAGAAATGGCGGTGCTGGAGAGATGCCGTTCCTGACCAAAAATATTGTGAGCGGCACATGAACAGAGGCCGCCACCGTTCAAGAAAGCCTGTGGAACCCGTCGCTGGAACCACCGCCGCCGCCACCACCACCACCACCACCTCAAAGCAGCTTATGTCTTCGGCTTCTTCATCAGCATCCTCGGTGTCCATTCCCGCTGGCGGTGGTTCAAGCAGCCTCAGCATTGCCAACCAACAGCTCAAGAGCTTGCAGCCTGCTGCATCTAATTCTTCTGCAGCCACTCAGATGAACAGGATGTTCATGAACAAAGAGAATGTGGGTGAAAGAATGCATCAAACACCAGGCCCCTCCATGTTGTCTAAAGAGAACCCATTCTTCATCCAGAAACAGCAAATGGGATATGAAGAATCCTCAAGAACAGAGTTTGGGCTTGTCCCCTCTGACTCCCTCCTCAACCCATCACAGAAAGGGTCTTCTCTAATGAGCTGCAGAAACTATGGTTCTTCATCACAGAACCTGACTGACCCTGCAGAAACCAACTCACAACAGCATTCCCTTCGCCACTTCATCGACGATTGGCCTAAAAACCAATCCAATCGCCCAGCTATTTCTTGGCCTGACCAATTTGACATGCAATCAGACAGAACCCAGTTGTCAATTTCAATCCCCATTGCTTCCTCAGACTTCATACCATCCACTTCCTCTACAAACAATGAGAAGCTCACTCTGTCCCCTCTCCGGCTTTCACGGGAACTAAACCCCAAGCCAATGGGTTTGGGAGTAGGCAGTGCCCTCAATGCACAAAACAATAAGCAAGCAAATTGGATCCCAATCAGTTGGGAGACTTCACTTGGTGGCCCTTTGGGGGAGGTTTTGCACCATACCAATAACAACACTGCAGCAGAATGCAAGAACTCTTCAGTGCTTAATCTTATGACAGAGGGATGGGACAAGAACAGCCCTTCTTCATTAGGGTCATCTCCTACTGGGGTCTTACAGAAGACAGCATTCGGGTCTCTCTCAAATAGCAGTGCAGGGAGTAGCCCAAGAGCAGAGAATAATAACCTCCTTGGTTCCAGTATCTTGGACTCTTCCTCCTTGCCTGCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

592

Amino Acids

63.72

Weight (kDa)

8.8

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22840 AT4G37740
fragaria_vesca	FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671
malus_domestica	MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1
prunus_persica	Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1
pyrus_communis	pycom02g15360 pycom08g06450 pycom15g26320
rosa_chinensis	RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051
rosa_laevigata	RLG00000010515 RLG00000010516 RLG00000017688
rosa_multiflora	Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012
rosa_roxburghii	Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200
rosa_samantha	Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100
rosa_wichuraiana	Rw2G016360 Rw6G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	715
AciI	CCGC	8 cut(s)	673, 715, 733, 777, 780, 783, 858, 864
AclWI	GGATC	4 cut(s)	121, 623, 1483, 1496
AcuI	CTGAAG	1 cut(s)	1566
AdeI	CACNNNGTG	1 cut(s)	1517
AfaI	GTAC	2 cut(s)	110, 367
AfiI	CCNNNNNNNGG	7 cut(s)	130, 408, 638, 767, 863, 1401, 1528
AgsI	TTSAA	5 cut(s)	155, 391, 744, 873, 1326
AjnI	CCWGG	3 cut(s)	468, 637, 1003
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	3 cut(s)	86, 1499, 1683
AlwI	GGATC	4 cut(s)	121, 623, 1483, 1496
AlwNI	CAGNNNCTG	3 cut(s)	53, 149, 1180
Asp700I	GAANNNNTTC	1 cut(s)	1034
AspS9I	GGNCC	5 cut(s)	431, 541, 576, 1007, 1520
AsuHPI	GGTGA	2 cut(s)	329, 995
BaeGI	GKGCMC	1 cut(s)	1456
BamHI	GGATCC	1 cut(s)	1488
BbsI	GAAGAC	3 cut(s)	813, 1128, 1670
Bbv12I	GWGCWC	1 cut(s)	311
BbvCI	CCTCAGC	1 cut(s)	881
BceAI	ACGGC	1 cut(s)	674
BcgI	CGANNNNNNTGC	2 cut(s)	1202, 1236
BciT130I	CCWGG	3 cut(s)	470, 639, 1005
BcoDI	GTCTC	3 cut(s)	86, 1499, 1683
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	5 cut(s)	141, 936, 1150, 1191, 1560
BglII	AGATCT	1 cut(s)	137
BlpI	GCTNAGC	1 cut(s)	260
Bme1390I	CCNGG	3 cut(s)	470, 639, 1005
BmgT120I	GGNCC	5 cut(s)	431, 541, 576, 1007, 1520
BmiI	GGNNCC	6 cut(s)	122, 759, 772, 1009, 1490, 1738
BmrFI	CCNGG	3 cut(s)	470, 639, 1005
BmrI	ACTGGG	4 cut(s)	390, 418, 1306, 1659
BmsI	GCATC	4 cut(s)	676, 848, 932, 1003
BmuI	ACTGGG	4 cut(s)	390, 418, 1306, 1659
BpiI	GAAGAC	3 cut(s)	813, 1128, 1670
BpmI	CTGGAG	1 cut(s)	700
Bpu10I	CCTNAGC	2 cut(s)	633, 881
Bpu1102I	GCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	887, 1060
BsaBI	GATNNNNATC	1 cut(s)	1493
BsaI	GGTCTC	2 cut(s)	86, 1683
BsaJI	CCNNGG	3 cut(s)	572, 843, 1732
BsaXI	ACNNNNNCTCC	2 cut(s)	1742, 1772
Bsc4I	CCNNNNNNNGG	7 cut(s)	130, 408, 638, 767, 863, 1401, 1528
Bse1I	ACTGG	6 cut(s)	58, 385, 413, 1312, 1654, 1740
Bse3DI	GCAATG	3 cut(s)	323, 885, 1332
Bse8I	GATNNNNATC	1 cut(s)	1493
BseBI	CCWGG	3 cut(s)	470, 639, 1005
BseDI	CCNNGG	3 cut(s)	572, 843, 1732
BseGI	GGATG	8 cut(s)	459, 525, 596, 839, 963, 1041, 1355, 1613
BseJI	GATNNNNATC	1 cut(s)	1493
BseLI	CCNNNNNNNGG	7 cut(s)	130, 408, 638, 767, 863, 1401, 1528
BseMI	GCAATG	3 cut(s)	323, 885, 1332
BseMII	CTCAG	6 cut(s)	251, 326, 624, 895, 959, 1356
BseNI	ACTGG	6 cut(s)	58, 385, 413, 1312, 1654, 1740
BseRI	GAGGAG	1 cut(s)	1103
BseSI	GKGCMC	1 cut(s)	1456
BseYI	CCCAGC	1 cut(s)	1264
BsgI	GTGCAG	2 cut(s)	60, 1716
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	1402
BslFI	GGGAC	3 cut(s)	1082, 1378, 1625
BslI	CCNNNNNNNGG	7 cut(s)	130, 408, 638, 767, 863, 1401, 1528
BsmAI	GTCTC	3 cut(s)	86, 1499, 1683
BsmFI	GGGAC	3 cut(s)	1082, 1378, 1625
BsmI	GAATGC	5 cut(s)	322, 996, 1213, 1574, 1670
Bso31I	GGTCTC	2 cut(s)	86, 1683
Bsp1286I	GDGCHC	2 cut(s)	311, 1456
Bsp143I	GATC	6 cut(s)	85, 113, 137, 477, 628, 1488
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	8 cut(s)	673, 715, 733, 777, 780, 783, 858, 864
BspCNI	CTCAG	6 cut(s)	252, 325, 625, 894, 958, 1355
BspHI	TCATGA	1 cut(s)	963
BspLI	GGNNCC	6 cut(s)	122, 759, 772, 1009, 1490, 1738
BspMAI	CTGCAG	5 cut(s)	145, 940, 1154, 1195, 1564
BspPI	GGATC	4 cut(s)	121, 623, 1483, 1496
BspTNI	GGTCTC	2 cut(s)	86, 1683
BsrBI	CCGCTC	1 cut(s)	715
BsrDI	GCAATG	3 cut(s)	323, 885, 1332
BsrI	ACTGG	6 cut(s)	58, 385, 413, 1312, 1654, 1740
BssECI	CCNNGG	3 cut(s)	572, 843, 1732
BssMI	GATC	6 cut(s)	85, 113, 137, 477, 628, 1488
BssT1I	CCWWGG	1 cut(s)	1732
Bst2UI	CCWGG	3 cut(s)	470, 639, 1005
Bst4CI	ACNGT	2 cut(s)	151, 740
Bst6I	CTCTTC	2 cut(s)	1585, 1759
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	6 cut(s)	145, 862, 911, 918, 1479, 1767
BstDEI	CTNAG	6 cut(s)	260, 312, 633, 881, 945, 1342
BstENI	CCTNNNNNAGG	1 cut(s)	636
BstF5I	GGATG	8 cut(s)	459, 525, 596, 839, 963, 1041, 1355, 1613
BstKTI	GATC	6 cut(s)	88, 116, 140, 480, 631, 1491
BstMAI	GTCTC	3 cut(s)	86, 1499, 1683
BstMBI	GATC	6 cut(s)	85, 113, 137, 477, 628, 1488
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 256, 882, 1460
BstNI	CCWGG	3 cut(s)	470, 639, 1005
BstNSI	RCATGY	1 cut(s)	1297
BstSCI	CCNGG	3 cut(s)	468, 637, 1003
BstSFI	CTRYAG	5 cut(s)	141, 936, 1150, 1191, 1560
BstSLI	GKGCMC	1 cut(s)	1456
BstV2I	GAAGAC	3 cut(s)	813, 1128, 1670
BstX2I	RGATCY	3 cut(s)	113, 137, 1488
BstXI	CCANNNNNNTGG	6 cut(s)	380, 450, 586, 1432, 1500, 1747
BstYI	RGATCY	3 cut(s)	113, 137, 1488
BtsCI	GGATG	8 cut(s)	459, 525, 596, 839, 963, 1041, 1355, 1613
BtsI	GCAGTG	3 cut(s)	1456, 1557, 1699
BtsIMutI	CAGTG	7 cut(s)	147, 406, 624, 1456, 1557, 1590, 1699
Cac8I	GCNNGC	6 cut(s)	145, 862, 911, 918, 1479, 1767
CaiI	CAGNNNCTG	3 cut(s)	53, 149, 1180
CciI	TCATGA	1 cut(s)	963
Cfr13I	GGNCC	5 cut(s)	431, 541, 576, 1007, 1520
Csp6I	GTAC	2 cut(s)	109, 366
CviAII	CATG	5 cut(s)	403, 721, 964, 1015, 1294
CviQI	GTAC	2 cut(s)	109, 366
DdeI	CTNAG	6 cut(s)	260, 312, 633, 881, 945, 1342
DpnI	GATC	6 cut(s)	87, 115, 139, 479, 630, 1490
DpnII	GATC	6 cut(s)	85, 113, 137, 477, 628, 1488
DraIII	CACNNNGTG	1 cut(s)	1517
Eam1104I	CTCTTC	2 cut(s)	1585, 1759
EarI	CTCTTC	2 cut(s)	1585, 1759
Eco130I	CCWWGG	1 cut(s)	1732
Eco147I	AGGCCT	1 cut(s)	473
Eco31I	GGTCTC	2 cut(s)	86, 1683
Eco57I	CTGAAG	1 cut(s)	1566
EcoNI	CCTNNNNNAGG	1 cut(s)	636
EcoO109I	RGGNCCY	2 cut(s)	541, 1007
EcoRII	CCWGG	3 cut(s)	468, 637, 1003
EcoT14I	CCWWGG	1 cut(s)	1732
EcoT22I	ATGCAT	1 cut(s)	996
ErhI	CCWWGG	1 cut(s)	1732
FaeI	CATG	5 cut(s)	406, 724, 967, 1018, 1297
FaqI	GGGAC	3 cut(s)	1082, 1378, 1625
FatI	CATG	5 cut(s)	402, 720, 963, 1014, 1293
FauI	CCCGC	1 cut(s)	865
FokI	GGATG	8 cut(s)	466, 512, 603, 826, 970, 1028, 1342, 1620
FspBI	CTAG	1 cut(s)	72
GsaI	CCCAGC	1 cut(s)	1268
GsuI	CTGGAG	1 cut(s)	700
HapII	CCGG	1 cut(s)	1402
Hin1II	CATG	5 cut(s)	406, 724, 967, 1018, 1297
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	5 cut(s)	548, 612, 1070, 1106, 1751
HpaII	CCGG	1 cut(s)	1402
HphI	GGTGA	2 cut(s)	329, 995
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188III	TCNNGA	8 cut(s)	89, 632, 695, 744, 904, 964, 1045, 1077
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	2 cut(s)	767, 1238
HpyAV	CCTTC	4 cut(s)	532, 636, 1229, 1635
HpyCH4III	ACNGT	2 cut(s)	151, 740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 256, 882, 1460
HpyF3I	CTNAG	6 cut(s)	260, 312, 633, 881, 945, 1342
Hsp92II	CATG	5 cut(s)	406, 724, 967, 1018, 1297
Kzo9I	GATC	6 cut(s)	85, 113, 137, 477, 628, 1488
LmnI	GCTCC	1 cut(s)	384
LweI	GCATC	4 cut(s)	676, 848, 932, 1003
MaeI	CTAG	1 cut(s)	72
MalI	GATC	6 cut(s)	87, 115, 139, 479, 630, 1490
MbiI	CCGCTC	1 cut(s)	715
MboI	GATC	6 cut(s)	85, 113, 137, 477, 628, 1488
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	3 cut(s)	113, 137, 1488
MhlI	GDGCHC	2 cut(s)	311, 1456
MluCI	AATT	7 cut(s)	254, 271, 280, 928, 1286, 1320, 1483
MlyI	GAGTC	2 cut(s)	1100, 1745
MmeI	TCCRAC	1 cut(s)	642
Mph1103I	ATGCAT	1 cut(s)	996
MroXI	GAANNNNTTC	1 cut(s)	1034
MseI	TTAA	1 cut(s)	1590
MslI	CAYNNNNRTG	3 cut(s)	448, 589, 947
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	1 cut(s)	1402
MspR9I	CCNGG	3 cut(s)	470, 639, 1005
MunI	CAATTG	1 cut(s)	254
Mva1269I	GAATGC	5 cut(s)	322, 996, 1213, 1574, 1670
MvaI	CCWGG	3 cut(s)	470, 639, 1005
MwoI	GCNNNNNNNGC	4 cut(s)	68, 256, 882, 1460
NdeII	GATC	6 cut(s)	85, 113, 137, 477, 628, 1488
NlaIII	CATG	5 cut(s)	406, 724, 967, 1018, 1297
NlaIV	GGNNCC	6 cut(s)	122, 759, 772, 1009, 1490, 1738
NsiI	ATGCAT	1 cut(s)	996
NspI	RCATGY	1 cut(s)	1297
PagI	TCATGA	1 cut(s)	963
PceI	AGGCCT	1 cut(s)	473
PctI	GAATGC	5 cut(s)	322, 996, 1213, 1574, 1670
PdmI	GAANNNNTTC	1 cut(s)	1034
PfeI	GAWTC	3 cut(s)	548, 612, 1070
PflMI	CCANNNNNTGG	1 cut(s)	408
PleI	GAGTC	2 cut(s)	1100, 1745
PpsI	GAGTC	2 cut(s)	1100, 1745
Psp6I	CCWGG	3 cut(s)	468, 637, 1003
PspFI	CCCAGC	1 cut(s)	1264
PspGI	CCWGG	3 cut(s)	468, 637, 1003
PspN4I	GGNNCC	6 cut(s)	122, 759, 772, 1009, 1490, 1738
PspPI	GGNCC	5 cut(s)	431, 541, 576, 1007, 1520
PstI	CTGCAG	5 cut(s)	145, 940, 1154, 1195, 1564
PstNI	CAGNNNCTG	3 cut(s)	53, 149, 1180
PsuI	RGATCY	3 cut(s)	113, 137, 1488
RsaI	GTAC	2 cut(s)	110, 367
RsaNI	GTAC	2 cut(s)	109, 366
RseI	CAYNNNNRTG	3 cut(s)	448, 589, 947
SaqAI	TTAA	1 cut(s)	1590
Sau3AI	GATC	6 cut(s)	85, 113, 137, 477, 628, 1488
Sau96I	GGNCC	5 cut(s)	431, 541, 576, 1007, 1520
SchI	GAGTC	2 cut(s)	1100, 1745
ScrFI	CCNGG	3 cut(s)	470, 639, 1005
SduI	GDGCHC	2 cut(s)	311, 1456
SfaNI	GCATC	4 cut(s)	676, 848, 932, 1003
SfcI	CTRYAG	5 cut(s)	141, 936, 1150, 1191, 1560
SmiMI	CAYNNNNRTG	3 cut(s)	448, 589, 947
SmlI	CTYRAG	2 cut(s)	902, 1075
SmoI	CTYRAG	2 cut(s)	902, 1075
Sse9I	AATT	7 cut(s)	254, 271, 280, 928, 1286, 1320, 1483
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	8 cut(s)	673, 715, 733, 777, 780, 783, 858, 864
SspI	AATATT	1 cut(s)	707
SspMI	CTAG	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	468, 637, 1003
StyI	CCWWGG	1 cut(s)	1732
TaaI	ACNGT	2 cut(s)	151, 740
TaqI	TCGA	1 cut(s)	1233
TasI	AATT	7 cut(s)	254, 271, 280, 928, 1286, 1320, 1483
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	4 cut(s)	718, 735, 782, 785
TfiI	GAWTC	3 cut(s)	548, 612, 1070
Tru1I	TTAA	1 cut(s)	1590
Tru9I	TTAA	1 cut(s)	1590
TscAI	CASTG	7 cut(s)	154, 413, 631, 1456, 1564, 1590, 1699
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	7 cut(s)	154, 413, 631, 1456, 1564, 1590, 1699
Van91I	CCANNNNNTGG	1 cut(s)	408
XagI	CCTNNNNNAGG	1 cut(s)	636
XceI	RCATGY	1 cut(s)	1297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1272
XmnI	GAANNNNTTC	1 cut(s)	1034
XspI	CTAG	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.