Rh2BG217300

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001679
Physical Location & Seq
Reverse (-)
20802639 .. 20806558
3920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG217300.1

Sequence Viewer

Length: 1284 bp
ATGGAATTTCCCATTTTATGCTGTTATAGTTTTTCTGAATCAGAAATAATGTTGTTCTTATTTCCTCTCTTGTCTAATTTGTCTTTTCTTCAATGTTGTGGCATTGTTATTCGTACAGTAGGTTGGGGGTCTTTCCATCTGGGATATTCTGGCAATGCTGATCCTGAACCTGGGAGGTGTCGTCGAACGGATGGGAAGAAGTGGCGGTGCTCAAGAGATGCTGTAGCAGACCAGAAGTACTGCGAGAGGCACATTAACAGGGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAGACAGGCCATGGTGCCTCTAGGAGAGCAAATTCAAAGGAAGTGGCGCCTCCGGTAACCTCATCAATGCCAACGTCGGTCAGTGGTGCATCCCAGCCGCAGTTCAAAAGCTTGGAGCCTCCTCCTGCTGATGCCACTGCCGCCAATTCTTCTGTTGATGCCCTTGCCAACAGAATGCAAGATCCACAGGGTCTCTCCGTGATGTCTGCTTCTAGCATCAAGCCTGAATCTAATGCTTCGAGTTTTAACATCCCGAAACGAGATTTCCCTATGGAAGAATCGTCGCAATCAGAGTTTGGTCTTGTTTCTACTGATTCACTTCTCAACCCTTCACATAGGAGCTCTTACATTCCCAAAGATTTTGGTGGTTCTTTCCTTGATTTCACTGATCAGGAAACACAAGACCAAAATCTGCTTCACCAGTTCATCGATGATTGGCCCAAGGACCAGTCCAGTCAATCAGTTGTTACTTGGCCTGAGGATTTAAAATCAGACTGGACTCAGCTCTCAATGGCAATCCCTATGGCGTCGGACTTCTCCTCATCCTCATCCTCACCCACACAAGACAAGCTTGGACTCTCACCGCTGAGGCTCTCTCGTGAGTTCGAGCCAACACAAAATTTGGGGGTGAGCAATGACCAAAGCGAACCAACAGATCAGCAAACAAATTGGGTACCTATCTCTTGGAGAAGTTCGATGGGGGGTCCCTTAGGGGAAGTCCTGACCAACACCAGTAGCTGTGTGAACTCCAAGAACTCATCATCGTCGAACACATCACCTATTAACCTCTTGAACGAAGGCTGGGATGGCAGCAGCCAGTTAGAGTCTTCCCCAACCGGTGTCCTGCAAAAGTCAACATTCTGTTCACTTTCAAACAGTAGCTCAGGGAGCAGCCCAAGAGCTGATAACAAGAAGAGTCGGGATGGGGCAAGCCTATATGATGATGTACTCGGTTCAACTCTAGCAAGCTCCTCAGTTCCCTCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

427

Amino Acids

46.34

Weight (kDa)

5.2

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 55 - 97 7.3e-21 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 967
AccB1I GGYRCC 3 cut(s) 308, 340, 967
AciI CCGC 5 cut(s) 205, 265, 392, 435, 878
AclWI GGATC 2 cut(s) 155, 470
AcsI RAATTY 3 cut(s) 5, 325, 913
AcyI GRCGYC 2 cut(s) 341, 821
AfaI GTAC 4 cut(s) 115, 239, 969, 1242
AfiI CCNNNNNNNGG 2 cut(s) 170, 290
AgeI ACCGGT 1 cut(s) 1130
AgsI TTSAA 7 cut(s) 92, 276, 330, 400, 1087, 1167, 1251
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AluBI AGCT 8 cut(s) 405, 636, 799, 865, 1032, 1176, 1196, 1263
AluI AGCT 8 cut(s) 405, 636, 799, 865, 1032, 1176, 1196, 1263
Alw21I GWGCWC 2 cut(s) 212, 638
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 2 cut(s) 155, 470
AlwNI CAGNNNCTG 1 cut(s) 1032
AoxI GGCC 5 cut(s) 262, 292, 301, 731, 767
ApeKI GCWGC 3 cut(s) 1104, 1107, 1185
ApoI RAATTY 3 cut(s) 5, 325, 913
AsiGI ACCGGT 1 cut(s) 1130
Asp718I GGTACC 1 cut(s) 967
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 4 cut(s) 262, 732, 739, 998
AsuHPI GGTGA 5 cut(s) 704, 840, 867, 934, 1062
AvaII GGWCC 2 cut(s) 739, 998
AxyI CCTNAGG 2 cut(s) 771, 1003
BanI GGYRCC 3 cut(s) 308, 340, 967
BanII GRGCYC 1 cut(s) 638
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 1 cut(s) 1113
Bbv12I GWGCWC 2 cut(s) 212, 638
BbvCI CCTCAGC 1 cut(s) 881
BbvI GCAGC 3 cut(s) 1116, 1119, 1197
BccI CCATC 6 cut(s) 144, 185, 276, 985, 1094, 1211
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 682
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 3 cut(s) 315, 507, 1256
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 344
BglI GCCNNNNNGGC 1 cut(s) 300
BisI GCNGC 6 cut(s) 265, 392, 435, 1105, 1108, 1186
BlsI GCNGC 6 cut(s) 266, 393, 436, 1106, 1109, 1187
BmcAI AGTACT 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 2 cut(s) 739, 998
BmgT120I GGNCC 4 cut(s) 262, 732, 739, 998
BmiI GGNNCC 7 cut(s) 263, 310, 342, 411, 969, 999, 1000
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 5 cut(s) 208, 392, 415, 442, 519
BpiI GAAGAC 1 cut(s) 1113
BplI GAGNNNNNCTC 2 cut(s) 874, 906
Bpu10I CCTNAGC 2 cut(s) 881, 1177
BpuEI CTTGAG 1 cut(s) 196
Bsa29I ATCGAT 1 cut(s) 723
BsaHI GRCGYC 2 cut(s) 341, 821
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 170, 304, 735
BsaWI WCCGGW 2 cut(s) 346, 1130
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 290
Bse118I RCCGGY 1 cut(s) 1130
Bse1I ACTGG 6 cut(s) 715, 742, 747, 794, 1026, 1111
Bse21I CCTNAGG 2 cut(s) 771, 1003
Bse3DI GCAATG 2 cut(s) 160, 934
BseBI CCWGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 723
BseDI CCNNGG 3 cut(s) 170, 304, 735
BseGI GGATG 7 cut(s) 196, 383, 543, 836, 842, 1105, 1222
BseLI CCNNNNNNNGG 2 cut(s) 170, 290
BseMI GCAATG 2 cut(s) 160, 934
BseMII CTCAG 5 cut(s) 762, 809, 872, 1191, 1281
BseNI ACTGG 6 cut(s) 715, 742, 747, 794, 1026, 1111
BseRI GAGGAG 3 cut(s) 405, 823, 1255
BseXI GCAGC 3 cut(s) 1116, 1119, 1197
BseYI CCCAGC 2 cut(s) 387, 1095
BshFI GGCC 5 cut(s) 264, 294, 303, 733, 769
BshNI GGYRCC 3 cut(s) 308, 340, 967
BshTI ACCGGT 1 cut(s) 1130
BshVI ATCGAT 1 cut(s) 723
BsiHKAI GWGCWC 2 cut(s) 212, 638
BsiSI CCGG 2 cut(s) 347, 1131
BslFI GGGAC 1 cut(s) 984
BslI CCNNNNNNNGG 2 cut(s) 170, 290
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 984
BsmI GAATGC 1 cut(s) 474
BsnI GGCC 5 cut(s) 264, 294, 303, 733, 769
Bso31I GGTCTC 1 cut(s) 491
Bsp1286I GDGCHC 2 cut(s) 212, 638
Bsp143I GATC 4 cut(s) 160, 475, 682, 949
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 5 cut(s) 205, 265, 392, 435, 878
BspANI GGCC 5 cut(s) 264, 294, 303, 733, 769
BspCNI CTCAG 5 cut(s) 763, 808, 873, 1190, 1280
BspDI ATCGAT 1 cut(s) 723
BspLI GGNNCC 7 cut(s) 263, 310, 342, 411, 969, 999, 1000
BspPI GGATC 2 cut(s) 155, 470
BspT107I GGYRCC 3 cut(s) 308, 340, 967
BspTNI GGTCTC 1 cut(s) 491
BsrDI GCAATG 2 cut(s) 160, 934
BsrFI RCCGGY 1 cut(s) 1130
BsrI ACTGG 6 cut(s) 715, 742, 747, 794, 1026, 1111
BssAI RCCGGY 1 cut(s) 1130
BssECI CCNNGG 3 cut(s) 170, 304, 735
BssMI GATC 4 cut(s) 160, 475, 682, 949
BssNI GRCGYC 2 cut(s) 341, 821
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 2 cut(s) 304, 735
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 118, 1172
Bst6I CTCTTC 1 cut(s) 1202
BstACI GRCGYC 2 cut(s) 341, 821
BstC8I GCNNGC 2 cut(s) 1225, 1261
BstDEI CTNAG 6 cut(s) 771, 795, 881, 1003, 1177, 1267
BstDSI CCRYGG 1 cut(s) 304
BstEII GGTNACC 1 cut(s) 349
BstENI CCTNNNNNAGG 1 cut(s) 288
BstF5I GGATG 7 cut(s) 196, 383, 543, 836, 842, 1105, 1222
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 4 cut(s) 163, 478, 685, 952
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 4 cut(s) 160, 475, 682, 949
BstMWI GCNNNNNNNGC 4 cut(s) 300, 434, 1101, 1182
BstNI CCWGG 1 cut(s) 171
BstPI GGTNACC 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 3 cut(s) 1116, 1119, 1197
BstV2I GAAGAC 1 cut(s) 1113
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
Bsu15I ATCGAT 1 cut(s) 723
Bsu36I CCTNAGG 2 cut(s) 771, 1003
BsuRI GGCC 5 cut(s) 264, 294, 303, 733, 769
BsuTUI ATCGAT 1 cut(s) 723
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 7 cut(s) 196, 383, 543, 836, 842, 1105, 1222
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 382, 429, 678
Cac8I GCNNGC 2 cut(s) 1225, 1261
CaiI CAGNNNCTG 1 cut(s) 1032
CfoI GCGC 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 1130
Cfr13I GGNCC 4 cut(s) 262, 732, 739, 998
ClaI ATCGAT 1 cut(s) 723
CseI GACGC 1 cut(s) 810
Csp6I GTAC 4 cut(s) 114, 238, 968, 1241
CspAI ACCGGT 1 cut(s) 1130
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 1 cut(s) 305
CviQI GTAC 4 cut(s) 114, 238, 968, 1241
DdeI CTNAG 6 cut(s) 771, 795, 881, 1003, 1177, 1267
DinI GGCGCC 1 cut(s) 342
DpnI GATC 4 cut(s) 162, 477, 684, 951
DpnII GATC 4 cut(s) 160, 475, 682, 949
DraI TTTAAA 1 cut(s) 780
Eam1104I CTCTTC 1 cut(s) 1202
EarI CTCTTC 1 cut(s) 1202
Ecl136II GAGCTC 1 cut(s) 636
Eco130I CCWWGG 2 cut(s) 304, 735
Eco24I GRGCYC 1 cut(s) 638
Eco31I GGTCTC 1 cut(s) 491
Eco47I GGWCC 2 cut(s) 739, 998
Eco53kI GAGCTC 1 cut(s) 636
Eco81I CCTNAGG 2 cut(s) 771, 1003
Eco91I GGTNACC 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 636
EcoNI CCTNNNNNAGG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 998
EcoO65I GGTNACC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 304, 735
EcoT38I GRGCYC 1 cut(s) 638
EgeI GGCGCC 1 cut(s) 342
EheI GGCGCC 1 cut(s) 342
ErhI CCWWGG 2 cut(s) 304, 735
FaeI CATG 1 cut(s) 308
FaiI YATR 8 cut(s) 19, 27, 306, 566, 630, 818, 1231, 1233
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 1 cut(s) 984
FatI CATG 1 cut(s) 304
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 6 cut(s) 265, 392, 435, 1105, 1108, 1186
FokI GGATG 7 cut(s) 203, 370, 530, 823, 829, 1112, 1229
FriOI GRGCYC 1 cut(s) 638
Fsp4HI GCNGC 6 cut(s) 265, 392, 435, 1105, 1108, 1186
FspBI CTAG 3 cut(s) 315, 507, 1256
GlaI GCGC 1 cut(s) 342
GluI GCNGC 6 cut(s) 265, 392, 435, 1105, 1108, 1186
GsaI CCCAGC 2 cut(s) 391, 1099
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 5 cut(s) 264, 294, 303, 733, 769
HapII CCGG 2 cut(s) 347, 1131
HgaI GACGC 1 cut(s) 810
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 2 cut(s) 341, 821
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HincII GTYRAC 1 cut(s) 1149
HindII GTYRAC 1 cut(s) 1149
HindIII AAGCTT 2 cut(s) 403, 863
HinfI GANTC 8 cut(s) 38, 521, 572, 608, 793, 870, 1118, 1210
HpaII CCGG 2 cut(s) 347, 1131
HphI GGTGA 5 cut(s) 704, 840, 867, 934, 1062
Hpy166II GTNNAC 3 cut(s) 1039, 1149, 1160
Hpy188I TCNGA 5 cut(s) 37, 43, 586, 787, 826
Hpy188III TCNNGA 9 cut(s) 164, 213, 276, 547, 686, 893, 1015, 1084, 1214
Hpy8I GTNNAC 3 cut(s) 1039, 1149, 1160
Hpy99I CGWCG 5 cut(s) 186, 373, 580, 826, 1063
HpyAV CCTTC 3 cut(s) 284, 633, 1085
HpyCH4III ACNGT 2 cut(s) 118, 1172
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 3 cut(s) 383, 472, 1141
HpyF10VI GCNNNNNNNGC 4 cut(s) 300, 434, 1101, 1182
HpyF3I CTNAG 6 cut(s) 771, 795, 881, 1003, 1177, 1267
HpySE526I ACGT 1 cut(s) 368
Hsp92I GRCGYC 2 cut(s) 341, 821
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 1 cut(s) 341
KasI GGCGCC 1 cut(s) 340
KflI GGGWCCC 1 cut(s) 998
KpnI GGTACC 1 cut(s) 971
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 4 cut(s) 160, 475, 682, 949
LmnI GCTCC 4 cut(s) 409, 633, 1182, 1268
Lsp1109I GCAGC 3 cut(s) 1116, 1119, 1197
LweI GCATC 5 cut(s) 208, 392, 415, 442, 519
MaeI CTAG 3 cut(s) 315, 507, 1256
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 2 cut(s) 349, 760
MalI GATC 4 cut(s) 162, 477, 684, 951
MboI GATC 4 cut(s) 160, 475, 682, 949
MboII GAAGA 6 cut(s) 80, 208, 435, 581, 1113, 1219
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 2 cut(s) 212, 638
MluCI AATT 6 cut(s) 5, 76, 325, 439, 913, 961
Mly113I GGCGCC 1 cut(s) 341
MlyI GAGTC 4 cut(s) 787, 864, 1127, 1219
MmeI TCCRAC 1 cut(s) 804
MseI TTAA 4 cut(s) 255, 540, 779, 1077
MspA1I CMGCKG 1 cut(s) 880
MspI CCGG 2 cut(s) 347, 1131
MspR9I CCNGG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 474
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 4 cut(s) 300, 434, 1101, 1182
NarI GGCGCC 1 cut(s) 341
NcoI CCATGG 1 cut(s) 304
NdeII GATC 4 cut(s) 160, 475, 682, 949
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 7 cut(s) 263, 310, 342, 411, 969, 999, 1000
PctI GAATGC 1 cut(s) 474
PfeI GAWTC 4 cut(s) 38, 521, 572, 608
PinAI ACCGGT 1 cut(s) 1130
PkrI GCNGC 6 cut(s) 266, 393, 436, 1106, 1109, 1187
PleI GAGTC 4 cut(s) 787, 864, 1126, 1218
PluTI GGCGCC 1 cut(s) 344
PpsI GAGTC 4 cut(s) 787, 864, 1126, 1218
PpuMI RGGWCCY 1 cut(s) 998
Psp124BI GAGCTC 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 998
Psp6I CCWGG 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 349
PspFI CCCAGC 2 cut(s) 387, 1095
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 7 cut(s) 263, 310, 342, 411, 969, 999, 1000
PspPI GGNCC 4 cut(s) 262, 732, 739, 998
PspPPI RGGWCCY 1 cut(s) 998
PstNI CAGNNNCTG 1 cut(s) 1032
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 4 cut(s) 115, 239, 969, 1242
RsaNI GTAC 4 cut(s) 114, 238, 968, 1241
SacI GAGCTC 1 cut(s) 638
SaqAI TTAA 4 cut(s) 255, 540, 779, 1077
SatI GCNGC 6 cut(s) 265, 392, 435, 1105, 1108, 1186
Sau3AI GATC 4 cut(s) 160, 475, 682, 949
Sau96I GGNCC 4 cut(s) 262, 732, 739, 998
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 4 cut(s) 787, 864, 1127, 1219
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 2 cut(s) 212, 638
SfaNI GCATC 5 cut(s) 208, 392, 415, 442, 519
SfcI CTRYAG 1 cut(s) 222
SfiI GGCCNNNNNGGCC 1 cut(s) 300
SfoI GGCGCC 1 cut(s) 342
SinI GGWCC 2 cut(s) 739, 998
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 6 cut(s) 5, 76, 325, 439, 913, 961
SsiI CCGC 5 cut(s) 205, 265, 392, 435, 878
SspDI GGCGCC 1 cut(s) 340
SspMI CTAG 3 cut(s) 315, 507, 1256
SstI GAGCTC 1 cut(s) 638
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 2 cut(s) 304, 735
TaaI ACNGT 2 cut(s) 118, 1172
TaiI ACGT 1 cut(s) 371
TaqI TCGA 6 cut(s) 184, 533, 723, 900, 989, 1061
TaqII GACCGA 1 cut(s) 361
TasI AATT 6 cut(s) 5, 76, 325, 439, 913, 961
TatI WGTACW 2 cut(s) 237, 1240
TauI GCSGC 3 cut(s) 267, 394, 437
TfiI GAWTC 4 cut(s) 38, 521, 572, 608
Tru1I TTAA 4 cut(s) 255, 540, 779, 1077
Tru9I TTAA 4 cut(s) 255, 540, 779, 1077
TscAI CASTG 3 cut(s) 382, 436, 685
TseI GCWGC 3 cut(s) 1104, 1107, 1185
TspDTI ATGAA 1 cut(s) 709
TspGWI ACGGA 2 cut(s) 203, 481
TspRI CASTG 3 cut(s) 382, 436, 685
VpaK11BI GGWCC 2 cut(s) 739, 998
XagI CCTNNNNNAGG 1 cut(s) 288
XapI RAATTY 3 cut(s) 5, 325, 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 3 cut(s) 315, 507, 1256
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.