Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001679

Physical Location & Seq

Genomic Coordinates Reverse (-)

29871031 .. 29873763

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1215900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGCCTTACTTTCATCAAGCATTATCTGCTTACAATACAAGTCCTGCAGGGCAAAATACTGGGAGTTTGAGTAATGGAGGAGCTGCCATGCATTGGAGTTTAGCAGGAGGCAGAGGACCTTTCACGCCATCCCAATGGATGGAGCTAGAACACCAGGCCTTGATCTACAAATACATCACTGCAAATATGCCTATTCCATCCAATTTGCTCTTCCCAATCAAGAAGGCTCTTGATTCTGCTGGATTTTCGACGTTCCCGAACGGACTTCTCAGGCCCAATTCATTGGGATGGGGTTCTATCCATTTGGGATTCTCCAACAACACTGATCCTGAGCCGGGAAGGTGTCGTAGGACCGACGGCAAGAAATGGCGGTGCTGGAGAGATGCCGTTCCTGACCAAAAGTATTGTGAGCGGCACATGAACAGAGGCCGCCACCGTTCAAGAAAGCCTGTGGAAGGCCACACTGGCCACACCAGAACCACCACCACCACCACCACCACCTCAAAGCAGCCTTTGGCTTCTTCGTCATCAACATCCGTAGTGTCCATTCCCGGTGGCGGTGGTGGCAGCAGCCTTGCTGTTGCCAACCAGCAGCTCAAGAGCTTGCAGCAGCCTGCTGCATCTAATTCTTCTGCAGCAACCACTCAGATGAGCAGGATGTTCATGAACAAAGAGAATGCGGGCGATAGAATTCAACGCACCATGGGCCTCTCCATGCTGTCGAAAGAAAGCCCATTCTCGACACAGAAACAGCAAACCGGACATGAAGAGTCCCCAAGAACAGAGTTCGGGCTTGTCCTCTCTGACTCCCTCCTAAACCCTTCACAGAAAACGTCATACCCTGCAGAAACAAATTCACAACACCATTCCCTTCGCCACTTCATCGACGACTGCCCTAAAACTCAATCCGACTGCCAACCTGTTTCATGGCCTAACCAACTCGACATGCAATCGGACAGAACCCAATTATCAATTTCGATCCCCATAGCTTCCTCCACAAGCAATGAGACTCTCTCACCGCTCCATCTCTCAAGGGAACTAGAGTCCCCTGCCTCAATGGGATTGGGAGCAGGCAGCAGTCACGCCCTCAGTGAACAGAACAACATCAAGCAAGCAAATTGGATTCCAACGGCTTGGGAGACTTCACTTGGCGGTCCTCTAGGGGAAGTTCTGCACAATCCCAACAGCAGCAACGGTGCAGCAGAATACAAGAACAACTCTTCAGTCCTTAATCTGATGACTGGGGGCAGCTGGGACAACAATAACAATAGCCCTTCGCCTTTAGGGTCATCTCCGACTGGGGTTCTACAGAAGACGGCGTTTGGGTCTCTGTCGAATAGCAGTGCAGGGAGCAGTCCAAGAGCAGAGAAAAATAATAGAAGCCATGAAGGGTTTAGCCTTTGCAACGACCTCCTTGGGTCCAATATGTTCAACTCTTCCTCCTTGCCTGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

486

Amino Acids

52.19

Weight (kDa)

8.97

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	40 - 73	2.4e-16	QLQ
WRC	PF08879	110 - 152	1.1e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22840 AT4G37740
fragaria_vesca	FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671
malus_domestica	MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1
prunus_persica	Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1
pyrus_communis	pycom02g15360 pycom08g06450 pycom15g26320
rosa_chinensis	RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051
rosa_laevigata	RLG00000010515 RLG00000010516 RLG00000017688
rosa_multiflora	Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012
rosa_roxburghii	Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200
rosa_samantha	Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100
rosa_wichuraiana	Rw2G016360 Rw6G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	93, 139
AccBSI	CCGCTC	2 cut(s)	412, 1021
AciI	CCGC	7 cut(s)	370, 412, 430, 558, 680, 1019, 1152
AclWI	GGATC	2 cut(s)	320, 973
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	2 cut(s)	690, 853
AcuI	CTGAAG	1 cut(s)	1206
AfiI	CCNNNNNNNGG	5 cut(s)	93, 139, 335, 455, 557
AgsI	TTSAA	3 cut(s)	441, 695, 1432
AjnI	CCWGG	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	6 cut(s)	83, 145, 595, 603, 989, 1251
AluI	AGCT	6 cut(s)	83, 145, 595, 603, 989, 1251
Alw26I	GTCTC	3 cut(s)	1001, 1133, 1332
AlwI	GGATC	2 cut(s)	320, 973
AoxI	GGCC	7 cut(s)	156, 272, 427, 457, 466, 706, 929
ApoI	RAATTY	2 cut(s)	690, 853
AspS9I	GGNCC	6 cut(s)	116, 273, 351, 706, 1154, 1419
AsuC2I	CCSGG	2 cut(s)	336, 552
AsuHPI	GGTGA	1 cut(s)	1008
AvaII	GGWCC	4 cut(s)	116, 351, 1154, 1419
BalI	TGGCCA	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	1319
BccI	CCATC	5 cut(s)	133, 136, 205, 282, 1032
BceAI	ACGGC	4 cut(s)	371, 373, 1146, 1332
BciT130I	CCWGG	1 cut(s)	155
BcnI	CCSGG	2 cut(s)	336, 552
BcoDI	GTCTC	3 cut(s)	1001, 1133, 1332
BfaI	CTAG	3 cut(s)	146, 1040, 1160
BfmI	CTRYAG	4 cut(s)	45, 633, 843, 1307
BglI	GCCNNNNNGGC	1 cut(s)	465
Bme1390I	CCNGG	3 cut(s)	155, 336, 552
Bme18I	GGWCC	4 cut(s)	116, 351, 1154, 1419
BmgT120I	GGNCC	6 cut(s)	116, 273, 351, 706, 1154, 1419
BmiI	GGNNCC	1 cut(s)	1420
BmrFI	CCNGG	3 cut(s)	155, 336, 552
BmrI	ACTGGG	3 cut(s)	69, 1251, 1308
BmsI	GCATC	2 cut(s)	373, 629
BmuI	ACTGGG	3 cut(s)	69, 1251, 1308
BpiI	GAAGAC	1 cut(s)	1319
BplI	GAGNNNNNCTC	2 cut(s)	998, 1030
BpmI	CTGGAG	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	2 cut(s)	581, 1015
BpuMI	CCSGG	2 cut(s)	336, 552
BsaI	GGTCTC	1 cut(s)	1332
BsaJI	CCNNGG	2 cut(s)	702, 1414
BsaWI	WCCGGW	1 cut(s)	758
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 1424, 1454
Bsc4I	CCNNNNNNNGG	5 cut(s)	93, 139, 335, 455, 557
Bse1I	ACTGG	4 cut(s)	64, 469, 1246, 1303
Bse3DI	GCAATG	1 cut(s)	1009
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	702, 1414
BseGI	GGATG	6 cut(s)	128, 144, 197, 293, 533, 663
BseLI	CCNNNNNNNGG	5 cut(s)	93, 139, 335, 455, 557
BseMI	GCAATG	1 cut(s)	1009
BseMII	CTCAG	4 cut(s)	283, 321, 659, 1102
BseNI	ACTGG	4 cut(s)	64, 469, 1246, 1303
BseRI	GAGGAG	1 cut(s)	93
BseYI	CCCAGC	1 cut(s)	1251
BsgI	GTGCAG	3 cut(s)	1157, 1218, 1365
BshFI	GGCC	7 cut(s)	158, 274, 429, 459, 468, 708, 931
BsiSI	CCGG	3 cut(s)	335, 552, 759
BslFI	GGGAC	3 cut(s)	757, 1030, 1268
BslI	CCNNNNNNNGG	5 cut(s)	93, 139, 335, 455, 557
BsmAI	GTCTC	3 cut(s)	1001, 1133, 1332
BsmFI	GGGAC	3 cut(s)	757, 1030, 1268
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	7 cut(s)	158, 274, 429, 459, 468, 708, 931
Bso31I	GGTCTC	1 cut(s)	1332
Bsp143I	GATC	3 cut(s)	162, 325, 978
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	7 cut(s)	370, 412, 430, 558, 680, 1019, 1152
BspANI	GGCC	7 cut(s)	158, 274, 429, 459, 468, 708, 931
BspCNI	CTCAG	4 cut(s)	282, 322, 658, 1101
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	1 cut(s)	1420
BspMAI	CTGCAG	3 cut(s)	49, 637, 847
BspPI	GGATC	2 cut(s)	320, 973
BspQI	GCTCTTC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	1332
BsrBI	CCGCTC	2 cut(s)	412, 1021
BsrDI	GCAATG	1 cut(s)	1009
BsrI	ACTGG	4 cut(s)	64, 469, 1246, 1303
BssECI	CCNNGG	2 cut(s)	702, 1414
BssMI	GATC	3 cut(s)	162, 325, 978
BssT1I	CCWWGG	2 cut(s)	702, 1414
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	437, 1196
Bst6I	CTCTTC	4 cut(s)	215, 762, 1225, 1441
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	6 cut(s)	605, 615, 682, 1072, 1113, 1449
BstDEI	CTNAG	4 cut(s)	269, 330, 645, 1088
BstDSI	CCRYGG	1 cut(s)	702
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	6 cut(s)	128, 144, 197, 293, 533, 663
BstKTI	GATC	3 cut(s)	165, 328, 981
BstMAI	GTCTC	3 cut(s)	1001, 1133, 1332
BstMBI	GATC	3 cut(s)	162, 325, 978
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 465, 564, 705
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	949
BstSCI	CCNGG	3 cut(s)	153, 334, 550
BstSFI	CTRYAG	4 cut(s)	45, 633, 843, 1307
BstV2I	GAAGAC	1 cut(s)	1319
BstXI	CCANNNNNNTGG	3 cut(s)	135, 283, 1134
BsuRI	GGCC	7 cut(s)	158, 274, 429, 459, 468, 708, 931
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	6 cut(s)	128, 144, 197, 293, 533, 663
BtsI	GCAGTG	2 cut(s)	177, 1348
BtsIMutI	CAGTG	5 cut(s)	177, 321, 462, 1096, 1348
Cac8I	GCNNGC	6 cut(s)	605, 615, 682, 1072, 1113, 1449
CciI	TCATGA	1 cut(s)	663
Cfr13I	GGNCC	6 cut(s)	116, 273, 351, 706, 1154, 1419
CviAII	CATG	9 cut(s)	88, 418, 664, 703, 715, 764, 927, 946, 1385
DdeI	CTNAG	4 cut(s)	269, 330, 645, 1088
DpnI	GATC	3 cut(s)	164, 327, 980
DpnII	GATC	3 cut(s)	162, 325, 978
EaeI	YGGCCR	1 cut(s)	466
Eam1104I	CTCTTC	4 cut(s)	215, 762, 1225, 1441
EarI	CTCTTC	4 cut(s)	215, 762, 1225, 1441
Eco130I	CCWWGG	2 cut(s)	702, 1414
Eco147I	AGGCCT	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	1332
Eco47I	GGWCC	4 cut(s)	116, 351, 1154, 1419
Eco57I	CTGAAG	1 cut(s)	1206
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	690
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	2 cut(s)	702, 1414
EcoT22I	ATGCAT	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	702, 1414
FaeI	CATG	9 cut(s)	91, 421, 667, 706, 718, 767, 930, 949, 1388
FaqI	GGGAC	3 cut(s)	757, 1030, 1268
FatI	CATG	9 cut(s)	87, 417, 663, 702, 714, 763, 926, 945, 1384
FauI	CCCGC	1 cut(s)	673
FokI	GGATG	6 cut(s)	115, 151, 184, 300, 520, 670
FspBI	CTAG	3 cut(s)	146, 1040, 1160
GsaI	CCCAGC	1 cut(s)	1255
GsuI	CTGGAG	1 cut(s)	397
HaeIII	GGCC	7 cut(s)	158, 274, 429, 459, 468, 708, 931
HapII	CCGG	3 cut(s)	335, 552, 759
Hin1II	CATG	9 cut(s)	91, 421, 667, 706, 718, 767, 930, 949, 1388
HinfI	GANTC	7 cut(s)	233, 309, 770, 806, 1009, 1043, 1123
HpaII	CCGG	3 cut(s)	335, 552, 759
HphI	GGTGA	1 cut(s)	1008
Hpy166II	GTNNAC	1 cut(s)	1094
Hpy188I	TCNGA	6 cut(s)	648, 805, 910, 955, 1236, 1296
Hpy188III	TCNNGA	9 cut(s)	220, 230, 256, 329, 392, 441, 598, 664, 739
Hpy8I	GTNNAC	1 cut(s)	1094
Hpy99I	CGWCG	3 cut(s)	253, 359, 890
HpyAV	CCTTC	7 cut(s)	217, 333, 449, 831, 881, 1284, 1382
HpyCH4III	ACNGT	2 cut(s)	437, 1196
HpyCH4IV	ACGT	2 cut(s)	251, 833
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 465, 564, 705
HpyF3I	CTNAG	4 cut(s)	269, 330, 645, 1088
HpySE526I	ACGT	2 cut(s)	251, 833
Hsp92II	CATG	9 cut(s)	91, 421, 667, 706, 718, 767, 930, 949, 1388
Kzo9I	GATC	3 cut(s)	162, 325, 978
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	5 cut(s)	80, 142, 1026, 1067, 1350
LweI	GCATC	2 cut(s)	373, 629
MaeI	CTAG	3 cut(s)	146, 1040, 1160
MaeII	ACGT	2 cut(s)	251, 833
MaeIII	GTNAC	1 cut(s)	1079
MalI	GATC	3 cut(s)	164, 327, 980
MbiI	CCGCTC	2 cut(s)	412, 1021
MboI	GATC	3 cut(s)	162, 325, 978
MboII	GAAGA	7 cut(s)	202, 513, 621, 779, 1212, 1324, 1428
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	8 cut(s)	202, 277, 625, 690, 853, 965, 972, 1117
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	4 cut(s)	779, 800, 1003, 1052
MmeI	TCCRAC	4 cut(s)	339, 933, 1151, 1319
Mox20I	TGGCCA	1 cut(s)	468
Mph1103I	ATGCAT	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	1 cut(s)	1230
MslI	CAYNNNNRTG	3 cut(s)	133, 286, 647
Msp20I	TGGCCA	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	1251
MspI	CCGG	3 cut(s)	335, 552, 759
MspR9I	CCNGG	3 cut(s)	155, 336, 552
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	26, 465, 564, 705
NciI	CCSGG	2 cut(s)	336, 552
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	3 cut(s)	162, 325, 978
NlaIII	CATG	9 cut(s)	91, 421, 667, 706, 718, 767, 930, 949, 1388
NlaIV	GGNNCC	1 cut(s)	1420
NmuCI	GTSAC	1 cut(s)	1079
NsiI	ATGCAT	1 cut(s)	93
NspI	RCATGY	1 cut(s)	949
PagI	TCATGA	1 cut(s)	663
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	3 cut(s)	233, 309, 1123
PflMI	CCANNNNNTGG	2 cut(s)	93, 139
PleI	GAGTC	4 cut(s)	778, 800, 1003, 1051
PpsI	GAGTC	4 cut(s)	778, 800, 1003, 1051
PpuMI	RGGWCCY	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	1251
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	1420
PspPI	GGNCC	6 cut(s)	116, 273, 351, 706, 1154, 1419
PspPPI	RGGWCCY	1 cut(s)	116
PstI	CTGCAG	3 cut(s)	49, 637, 847
PvuII	CAGCTG	1 cut(s)	1251
RseI	CAYNNNNRTG	3 cut(s)	133, 286, 647
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	1230
Sau3AI	GATC	3 cut(s)	162, 325, 978
Sau96I	GGNCC	6 cut(s)	116, 273, 351, 706, 1154, 1419
SbfI	CCTGCAGG	1 cut(s)	49
SchI	GAGTC	4 cut(s)	779, 800, 1003, 1052
ScrFI	CCNGG	3 cut(s)	155, 336, 552
SdaI	CCTGCAGG	1 cut(s)	49
SfaNI	GCATC	2 cut(s)	373, 629
SfcI	CTRYAG	4 cut(s)	45, 633, 843, 1307
SfiI	GGCCNNNNNGGCC	1 cut(s)	465
SinI	GGWCC	4 cut(s)	116, 351, 1154, 1419
SmiMI	CAYNNNNRTG	3 cut(s)	133, 286, 647
SmlI	CTYRAG	2 cut(s)	596, 1030
SmoI	CTYRAG	2 cut(s)	596, 1030
Sse8387I	CCTGCAGG	1 cut(s)	49
Sse9I	AATT	8 cut(s)	202, 277, 625, 690, 853, 965, 972, 1117
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	7 cut(s)	370, 412, 430, 558, 680, 1019, 1152
SspMI	CTAG	3 cut(s)	146, 1040, 1160
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	153, 334, 550
StyI	CCWWGG	2 cut(s)	702, 1414
TaaI	ACNGT	2 cut(s)	437, 1196
TaiI	ACGT	2 cut(s)	254, 836
TaqI	TCGA	7 cut(s)	248, 722, 740, 885, 942, 977, 1334
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	8 cut(s)	202, 277, 625, 690, 853, 965, 972, 1117
TauI	GCSGC	2 cut(s)	415, 432
TfiI	GAWTC	3 cut(s)	233, 309, 1123
Tru1I	TTAA	1 cut(s)	1230
Tru9I	TTAA	1 cut(s)	1230
TscAI	CASTG	5 cut(s)	184, 328, 469, 1096, 1348
TseFI	GTSAC	1 cut(s)	1079
Tsp45I	GTSAC	1 cut(s)	1079
TspDTI	ATGAA	8 cut(s)	270, 434, 652, 680, 780, 871, 915, 1401
TspGWI	ACGGA	2 cut(s)	276, 526
TspRI	CASTG	5 cut(s)	184, 328, 469, 1096, 1348
Van91I	CCANNNNNTGG	2 cut(s)	93, 139
VpaK11BI	GGWCC	4 cut(s)	116, 351, 1154, 1419
XagI	CCTNNNNNAGG	1 cut(s)	453
XapI	RAATTY	2 cut(s)	690, 853
XceI	RCATGY	1 cut(s)	949
XspI	CTAG	3 cut(s)	146, 1040, 1160
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.