Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001679

Physical Location & Seq

Genomic Coordinates Reverse (-)

13861347 .. 13865174

Gene Structure 3828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0155400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCCACTGTCTTATTGTATAGCAGCGAGAAAGCCCTGCGTGCGTTGGGTTGAGAAATACTTCAAGGACTGCCTCTGCAACCTCCGCGACGACTTCTCCTTCGGTTTCGGGCTTGTCAGCTTAGTCTGTTGGGGAGTTGCAGAAATTCCTCAGATAATCACCAACTTTCAGACTAAGTCAAGCCATGGAGTCTCTCTTGCTTTTCTCCTCACTTGGGTTGCCGGGGATGTGTTTAATCTGGTGGGTTGTCTTCTGGAACCAGCAACTTTGCCTACCCAGTACTACACAGCTCTGCTTTACACAATAAGCACTGTAGTGTTGGTGTTGCAGAGCGTGTACTATGATTACTTCTATACATGGTGGAAATGTGGCAAAGTCACAGTTAACCAACTGGCACAAGATGAAGAAGAAGATTCCAGAAAACCATTGAATCCAAAGTTGGTTGATTCAGGCGTCCCAATACCGAGTGCTTCACCCAAAGCCACTCCTAGAAGGGAGTTCTACTATACGTCAGCTAGATCGATGGCTGGTAGTGGCACTCCGCCGTTTCGAACGTATATGAAGGTAGCCAGAAGTGGTCCTTCTACATTGGCAGTAGACAGTGACTCATCTTCGGAGGACGAGTCGGCTCCAGTTACATCCAAAAAATCTGATAGGACTTCCCAACCTAGGCCAATTCCAAGATCGGTAGGTTATGGGGCATTTTTAGCTACATCACTTAACTTGCCCTTCGGAAGCAAGGGAATGACACAAGTATTATGCATAGGAATTACTGGGAGGAAGCTATTGCAGGAACACTCGGTGGAGCATAGTGTTTATGGGCAATGGTTGGGGTGGCTGATGGCTGCTATATACATGGGCGGTCGACTACCTCAGATTTGGTTAAACATTAAAAGAGGGAGTGTGGAGGGCTTGAATCCTCTAATGTTCGTCTTTGCATTGGTTGCAAATGTTGCTTATGTGGCTAGCATACTTGTAAGAACAATCGAGTGGGATAACATTAAAGCCAATATGCCATGGTTGCTCGATGCTGCAGTTTGCGTGGTGCTCGACTTATTTATAATACTGCAGTACATGTATTACAGATACTGGAGGAAGAGGACATCACCACGTGATGAGGAAGACAACATATACTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

380

Amino Acids

42.83

Weight (kDa)

8.71

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	32 - 88	4.1e-18	PQ loop repeat
PQ-loop	PF04193	274 - 329	1e-16	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22840 AT4G37740
fragaria_vesca	FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671
malus_domestica	MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1
prunus_persica	Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1
pyrus_communis	pycom02g15360 pycom08g06450 pycom15g26320
rosa_chinensis	RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051
rosa_laevigata	RLG00000010515 RLG00000010516 RLG00000017688
rosa_multiflora	Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012
rosa_roxburghii	Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200
rosa_samantha	Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100
rosa_wichuraiana	Rw2G016360 Rw6G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1061
AccI	GTMKAC	2 cut(s)	597, 865
AccII	CGCG	1 cut(s)	87
AciI	CCGC	3 cut(s)	85, 542, 861
AcsI	RAATTY	1 cut(s)	144
AcvI	CACGTG	1 cut(s)	1112
AcyI	GRCGYC	1 cut(s)	453
AdeI	CACNNNGTG	2 cut(s)	802, 1112
AfaI	GTAC	3 cut(s)	281, 338, 1073
AfiI	CCNNNNNNNGG	2 cut(s)	214, 669
AflIII	ACRYGT	1 cut(s)	1074
AgsI	TTSAA	3 cut(s)	64, 430, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	5 cut(s)	120, 290, 515, 710, 784
AluI	AGCT	5 cut(s)	120, 290, 515, 710, 784
Alw21I	GWGCWC	1 cut(s)	1050
Alw26I	GTCTC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	1089
AoxI	GGCC	1 cut(s)	671
ApeKI	GCWGC	3 cut(s)	23, 845, 1031
ApoI	RAATTY	1 cut(s)	144
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
Asp700I	GAANNNNTTC	1 cut(s)	59
AspA2I	CCTAGG	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	578
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	151, 465, 1098
AsuII	TTCGAA	1 cut(s)	550
AsuNHI	GCTAGC	1 cut(s)	965
AvaII	GGWCC	1 cut(s)	578
AvrII	CCTAGG	1 cut(s)	668
BbrPI	CACGTG	1 cut(s)	1112
BbsI	GAAGAC	2 cut(s)	242, 1128
Bbv12I	GWGCWC	1 cut(s)	1050
BbvI	GCAGC	3 cut(s)	35, 832, 1018
BccI	CCATC	2 cut(s)	517, 835
BceAI	ACGGC	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	4 cut(s)	489, 516, 669, 966
BfmI	CTRYAG	3 cut(s)	312, 1032, 1067
BisI	GCNGC	3 cut(s)	24, 846, 1032
BlnI	CCTAGG	1 cut(s)	668
BlsI	GCNGC	3 cut(s)	25, 847, 1033
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	258, 630
BmrFI	CCNGG	1 cut(s)	223
BmrI	ACTGGG	2 cut(s)	271, 783
BmsI	GCATC	1 cut(s)	1018
BmtI	GCTAGC	1 cut(s)	969
BmuI	ACTGGG	2 cut(s)	271, 783
BpiI	GAAGAC	2 cut(s)	242, 1128
BpmI	CTGGAG	2 cut(s)	615, 1111
Bpu14I	TTCGAA	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	223
Bsa29I	ATCGAT	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	1112
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	4 cut(s)	184, 222, 668, 1016
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 608, 638
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 669
Bse1I	ACTGG	5 cut(s)	277, 396, 632, 778, 1094
Bse3DI	GCAATG	1 cut(s)	830
BseCI	ATCGAT	1 cut(s)	521
BseDI	CCNNGG	4 cut(s)	184, 222, 668, 1016
BseGI	GGATG	2 cut(s)	232, 638
BseLI	CCNNNNNNNGG	2 cut(s)	214, 669
BseMI	GCAATG	1 cut(s)	830
BseMII	CTCAG	2 cut(s)	164, 887
BseNI	ACTGG	5 cut(s)	277, 396, 632, 778, 1094
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	3 cut(s)	35, 832, 1018
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	865
BshFI	GGCC	1 cut(s)	673
BshVI	ATCGAT	1 cut(s)	521
BsiEI	CGRYCG	1 cut(s)	865
BsiHKAI	GWGCWC	1 cut(s)	1050
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	214, 669
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	673
Bsp119I	TTCGAA	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	1050
Bsp143I	GATC	2 cut(s)	518, 683
Bsp19I	CCATGG	2 cut(s)	184, 1016
BspACI	CCGC	3 cut(s)	85, 542, 861
BspANI	GGCC	1 cut(s)	673
BspCNI	CTCAG	2 cut(s)	163, 886
BspDI	ATCGAT	1 cut(s)	521
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	258, 630
BspMAI	CTGCAG	2 cut(s)	1036, 1071
BspOI	GCTAGC	1 cut(s)	969
BspT104I	TTCGAA	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	830
BsrI	ACTGG	5 cut(s)	277, 396, 632, 778, 1094
BssECI	CCNNGG	4 cut(s)	184, 222, 668, 1016
BssMI	GATC	2 cut(s)	518, 683
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	3 cut(s)	184, 668, 1016
Bst4CI	ACNGT	4 cut(s)	9, 313, 382, 602
Bst6I	CTCTTC	1 cut(s)	1091
BstACI	GRCGYC	1 cut(s)	453
BstAPI	GCANNNNNTGC	2 cut(s)	944, 953
BstBAI	YACGTR	1 cut(s)	1112
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	41, 967
BstDEI	CTNAG	4 cut(s)	121, 150, 174, 873
BstDSI	CCRYGG	2 cut(s)	184, 1016
BstF5I	GGATG	2 cut(s)	232, 638
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	521, 686
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	518, 683
BstMCI	CGRYCG	1 cut(s)	865
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 84, 707, 944, 953, 962, 1021
BstNSI	RCATGY	1 cut(s)	1078
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	3 cut(s)	312, 1032, 1067
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	35, 832, 1018
BstV2I	GAAGAC	2 cut(s)	242, 1128
Bsu15I	ATCGAT	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	673
BsuTUI	ATCGAT	1 cut(s)	521
BtgI	CCRYGG	2 cut(s)	184, 1016
BtsCI	GGATG	2 cut(s)	232, 638
BtsIMutI	CAGTG	3 cut(s)	5, 309, 607
Cac8I	GCNNGC	2 cut(s)	41, 967
CaiI	CAGNNNCTG	1 cut(s)	1089
Cfr13I	GGNCC	1 cut(s)	578
ClaI	ATCGAT	1 cut(s)	521
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	3 cut(s)	280, 337, 1072
CviAII	CATG	5 cut(s)	185, 357, 856, 1017, 1075
CviQI	GTAC	3 cut(s)	280, 337, 1072
DdeI	CTNAG	4 cut(s)	121, 150, 174, 873
DpnI	GATC	2 cut(s)	520, 685
DpnII	GATC	2 cut(s)	518, 683
DraIII	CACNNNGTG	2 cut(s)	802, 1112
Eam1104I	CTCTTC	1 cut(s)	1091
EarI	CTCTTC	1 cut(s)	1091
EciI	GGCGGA	1 cut(s)	531
Eco130I	CCWWGG	3 cut(s)	184, 668, 1016
Eco47I	GGWCC	1 cut(s)	578
Eco72I	CACGTG	1 cut(s)	1112
EcoT14I	CCWWGG	3 cut(s)	184, 668, 1016
EcoT22I	ATGCAT	1 cut(s)	764
ErhI	CCWWGG	3 cut(s)	184, 668, 1016
FaeI	CATG	5 cut(s)	188, 360, 859, 1020, 1078
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	5 cut(s)	184, 356, 855, 1016, 1074
FblI	GTMKAC	2 cut(s)	597, 865
Fnu4HI	GCNGC	3 cut(s)	24, 846, 1032
FokI	GGATG	2 cut(s)	239, 625
Fsp4HI	GCNGC	3 cut(s)	24, 846, 1032
FspBI	CTAG	4 cut(s)	489, 516, 669, 966
GluI	GCNGC	3 cut(s)	24, 846, 1032
GsuI	CTGGAG	2 cut(s)	615, 1111
HaeIII	GGCC	1 cut(s)	673
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	442
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	5 cut(s)	188, 360, 859, 1020, 1078
HincII	GTYRAC	2 cut(s)	385, 866
HindII	GTYRAC	2 cut(s)	385, 866
HinfI	GANTC	7 cut(s)	189, 413, 430, 446, 605, 623, 916
HpaI	GTTAAC	1 cut(s)	385
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	3 cut(s)	151, 465, 1098
Hpy166II	GTNNAC	4 cut(s)	337, 385, 598, 866
Hpy188I	TCNGA	6 cut(s)	153, 171, 616, 652, 734, 876
Hpy188III	TCNNGA	2 cut(s)	254, 417
Hpy8I	GTNNAC	4 cut(s)	337, 385, 598, 866
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	5 cut(s)	109, 486, 556, 591, 739
HpyCH4III	ACNGT	4 cut(s)	9, 313, 382, 602
HpyCH4IV	ACGT	3 cut(s)	509, 554, 1111
HpyCH4V	TGCA	9 cut(s)	78, 140, 328, 762, 790, 938, 947, 1034, 1069
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 84, 707, 944, 953, 962, 1021
HpyF3I	CTNAG	4 cut(s)	121, 150, 174, 873
HpySE526I	ACGT	3 cut(s)	509, 554, 1111
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	5 cut(s)	188, 360, 859, 1020, 1078
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	518, 683
LmnI	GCTCC	2 cut(s)	634, 805
Lsp1109I	GCAGC	3 cut(s)	35, 832, 1018
LweI	GCATC	1 cut(s)	1018
MaeI	CTAG	4 cut(s)	489, 516, 669, 966
MaeII	ACGT	3 cut(s)	509, 554, 1111
MaeIII	GTNAC	3 cut(s)	376, 602, 634
MalI	GATC	2 cut(s)	520, 685
MboI	GATC	2 cut(s)	518, 683
MboII	GAAGA	7 cut(s)	242, 416, 419, 422, 603, 1108, 1133
MhlI	GDGCHC	1 cut(s)	1050
MluCI	AATT	3 cut(s)	144, 675, 768
MlyI	GAGTC	3 cut(s)	198, 599, 632
Mph1103I	ATGCAT	1 cut(s)	764
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	6 cut(s)	234, 384, 720, 884, 891, 1002
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	7 cut(s)	40, 84, 707, 944, 953, 962, 1021
NciI	CCSGG	1 cut(s)	223
NcoI	CCATGG	2 cut(s)	184, 1016
NdeII	GATC	2 cut(s)	518, 683
NheI	GCTAGC	1 cut(s)	965
NlaIII	CATG	5 cut(s)	188, 360, 859, 1020, 1078
NlaIV	GGNNCC	2 cut(s)	258, 630
NmuCI	GTSAC	2 cut(s)	376, 602
NsiI	ATGCAT	1 cut(s)	764
NspI	RCATGY	1 cut(s)	1078
NspV	TTCGAA	1 cut(s)	550
OliI	CACNNNNGTG	1 cut(s)	314
PciI	ACATGT	1 cut(s)	1074
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	4 cut(s)	413, 430, 446, 916
PflFI	GACNNNGTC	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	25, 847, 1033
PleI	GAGTC	3 cut(s)	197, 599, 631
PmaCI	CACGTG	1 cut(s)	1112
PmlI	CACGTG	1 cut(s)	1112
PpsI	GAGTC	3 cut(s)	197, 599, 631
Ppu21I	YACGTR	1 cut(s)	1112
PscI	ACATGT	1 cut(s)	1074
PsiI	TTATAA	1 cut(s)	1061
PspCI	CACGTG	1 cut(s)	1112
PspN4I	GGNNCC	2 cut(s)	258, 630
PspPI	GGNCC	1 cut(s)	578
PstI	CTGCAG	2 cut(s)	1036, 1071
PstNI	CAGNNNCTG	1 cut(s)	1089
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	3 cut(s)	281, 338, 1073
RsaNI	GTAC	3 cut(s)	280, 337, 1072
RseI	CAYNNNNRTG	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	864
SaqAI	TTAA	6 cut(s)	234, 384, 720, 884, 891, 1002
SatI	GCNGC	3 cut(s)	24, 846, 1032
Sau3AI	GATC	2 cut(s)	518, 683
Sau96I	GGNCC	1 cut(s)	578
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	3 cut(s)	198, 599, 632
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	1050
SfaNI	GCATC	1 cut(s)	1018
SfcI	CTRYAG	3 cut(s)	312, 1032, 1067
SfuI	TTCGAA	1 cut(s)	550
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	3 cut(s)	144, 675, 768
SsiI	CCGC	3 cut(s)	85, 542, 861
SspMI	CTAG	4 cut(s)	489, 516, 669, 966
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	3 cut(s)	184, 668, 1016
TaaI	ACNGT	4 cut(s)	9, 313, 382, 602
TaiI	ACGT	3 cut(s)	512, 557, 1114
TaqI	TCGA	6 cut(s)	521, 550, 865, 987, 1026, 1050
TasI	AATT	3 cut(s)	144, 675, 768
TatI	WGTACW	3 cut(s)	279, 336, 1071
TfiI	GAWTC	4 cut(s)	413, 430, 446, 916
Tru1I	TTAA	6 cut(s)	234, 384, 720, 884, 891, 1002
Tru9I	TTAA	6 cut(s)	234, 384, 720, 884, 891, 1002
TscAI	CASTG	3 cut(s)	12, 316, 607
TseFI	GTSAC	2 cut(s)	376, 602
TseI	GCWGC	3 cut(s)	23, 845, 1031
Tsp45I	GTSAC	2 cut(s)	376, 602
TspDTI	ATGAA	2 cut(s)	417, 575
TspRI	CASTG	3 cut(s)	12, 316, 607
Tth111I	GACNNNGTC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	144
XceI	RCATGY	1 cut(s)	1078
XmaJI	CCTAGG	1 cut(s)	668
XmiI	GTMKAC	2 cut(s)	597, 865
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	4 cut(s)	489, 516, 669, 966
ZrmI	AGTACT	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.