Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001679

Physical Location & Seq

Genomic Coordinates Reverse (-)

66711416 .. 66712038

Gene Structure 623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG490600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCAGTTCGATCAACGCACATACGCCATGATCCGGCCGAGGAGATCAACCGACGAGGTGATGTCAACGTCGTTTCGGGCAAATGTACCGTTCTCGTGGGAGAAGAAGCCCGGGACGTCCAAGCTCAAACCATCTGATTCTTCCGATCGTCGTAGTTTGGATCACTACTTCACGACCACGACGTCGTCCCTAAAGCTGATACCTCCTCCAGCTCGTCTCTCATCGCAAATTTCCATCAGTAGTACTGCTGGTAACCGGCAGACCCGTGGCGGCCCTTGTCTATGCTCCAGTGTTGATGTTCAGCCATCTGTTGCTACGTTTCGAAACCCATTCGGATTAACGGGTGATGCTAGTCCTACTACTGCTAAAAATAATCGTCTTCAAGAAGACCCATTTCTTGCAGCTTTCATCAAATGCACCCAGATGCACGGCTCCAGAGTCACTAATAGTGGCAAAAGCTATGCAGCTGATAGTAGACATTATGCAGCAGCTAGGTTTTCTGCCGGGAAGAAAACCACCCTGTTCTCGATGTTTACTAGTAGTTTCTCATGTAAGTACTCCTCCGCTGTTAGGGACGACAATATTGTAGTTGCAAGGCCACGCAAATCCCCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

205

Amino Acids

22.61

Weight (kDa)

10.35

Isoelectric Point (pI)

61.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22840 AT4G37740
fragaria_vesca	FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671
malus_domestica	MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1
prunus_persica	Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1
pyrus_communis	pycom02g15360 pycom08g06450 pycom15g26320
rosa_chinensis	RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051
rosa_laevigata	RLG00000010515 RLG00000010516 RLG00000017688
rosa_multiflora	Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012
rosa_roxburghii	Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200
rosa_samantha	Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100
rosa_wichuraiana	Rw2G016360 Rw6G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	181
AatII	GACGTC	2 cut(s)	119, 185
AccI	GTMKAC	1 cut(s)	475
AciI	CCGC	2 cut(s)	270, 564
AclWI	GGATC	2 cut(s)	25, 168
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	228
AcyI	GRCGYC	2 cut(s)	116, 182
AfaI	GTAC	3 cut(s)	87, 244, 557
AfiI	CCNNNNNNNGG	2 cut(s)	33, 570
AgsI	TTSAA	1 cut(s)	383
AhlI	ACTAGT	1 cut(s)	536
AluBI	AGCT	7 cut(s)	124, 196, 212, 404, 459, 467, 491
AluI	AGCT	7 cut(s)	124, 196, 212, 404, 459, 467, 491
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	25, 168
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	35, 271, 596
ApeKI	GCWGC	4 cut(s)	401, 464, 485, 488
ApoI	RAATTY	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	3 cut(s)	111, 112, 505
AsuHPI	GGTGA	2 cut(s)	70, 356
AsuII	TTCGAA	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	110
BauI	CACGAG	1 cut(s)	94
BbsI	GAAGAC	2 cut(s)	371, 393
BbvI	GCAGC	4 cut(s)	413, 476, 497, 500
BccI	CCATC	3 cut(s)	139, 242, 313
BceAI	ACGGC	1 cut(s)	445
BcnI	CCSGG	3 cut(s)	111, 112, 505
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	3 cut(s)	351, 492, 537
BisI	GCNGC	5 cut(s)	271, 402, 465, 486, 489
BlsI	GCNGC	5 cut(s)	272, 403, 466, 487, 490
BmcAI	AGTACT	2 cut(s)	244, 557
Bme1390I	CCNGG	3 cut(s)	111, 112, 505
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	3 cut(s)	111, 112, 505
BmsI	GCATC	2 cut(s)	337, 414
BpiI	GAAGAC	2 cut(s)	371, 393
BpmI	CTGGAG	3 cut(s)	192, 271, 418
Bpu14I	TTCGAA	1 cut(s)	322
BpuMI	CCSGG	3 cut(s)	111, 112, 505
BsaHI	GRCGYC	2 cut(s)	116, 182
BsaJI	CCNNGG	3 cut(s)	38, 110, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 570
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	38, 110, 265
BseLI	CCNNNNNNNGG	2 cut(s)	33, 570
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	3 cut(s)	55, 195, 550
BseX3I	CGGCCG	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	413, 476, 497, 500
Bsh1285I	CGRYCG	2 cut(s)	38, 148
BshFI	GGCC	3 cut(s)	37, 273, 598
BsiEI	CGRYCG	2 cut(s)	38, 148
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	34, 111, 256, 504
BslFI	GGGAC	3 cut(s)	127, 172, 587
BslI	CCNNNNNNNGG	2 cut(s)	33, 570
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	3 cut(s)	127, 172, 587
BsnI	GGCC	3 cut(s)	37, 273, 598
BsoBI	CYCGRG	1 cut(s)	110
Bsp119I	TTCGAA	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	10, 30, 44, 145, 160
BspACI	CCGC	2 cut(s)	270, 564
BspANI	GGCC	3 cut(s)	37, 273, 598
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	2 cut(s)	25, 168
BspT104I	TTCGAA	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	3 cut(s)	38, 110, 265
BssMI	GATC	5 cut(s)	10, 30, 44, 145, 160
BssNI	GRCGYC	2 cut(s)	116, 182
BssSI	CACGAG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	90
BstACI	GRCGYC	2 cut(s)	116, 182
BstBI	TTCGAA	1 cut(s)	322
BstDSI	CCRYGG	1 cut(s)	265
BstEII	GGTNACC	1 cut(s)	251
BstKTI	GATC	5 cut(s)	13, 33, 47, 148, 163
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	10, 30, 44, 145, 160
BstMCI	CGRYCG	2 cut(s)	38, 148
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	109, 110, 503
BstV1I	GCAGC	4 cut(s)	413, 476, 497, 500
BstV2I	GAAGAC	2 cut(s)	371, 393
BstZI	CGGCCG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	37, 273, 598
BtgI	CCRYGG	1 cut(s)	265
BtgZI	GCGATG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	272
Cfr9I	CCCGGG	1 cut(s)	110
Csp6I	GTAC	3 cut(s)	86, 243, 556
CviAII	CATG	2 cut(s)	28, 549
CviQI	GTAC	3 cut(s)	86, 243, 556
DpnI	GATC	5 cut(s)	12, 32, 46, 147, 162
DpnII	GATC	5 cut(s)	10, 30, 44, 145, 160
DrdI	GACNNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	35
EagI	CGGCCG	1 cut(s)	35
EclXI	CGGCCG	1 cut(s)	35
Eco52I	CGGCCG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	2 cut(s)	31, 552
FaiI	YATR	6 cut(s)	22, 29, 283, 462, 483, 550
FaqI	GGGAC	3 cut(s)	127, 172, 587
FatI	CATG	2 cut(s)	27, 548
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	5 cut(s)	271, 402, 465, 486, 489
Fsp4HI	GCNGC	5 cut(s)	271, 402, 465, 486, 489
FspBI	CTAG	3 cut(s)	351, 492, 537
GluI	GCNGC	5 cut(s)	271, 402, 465, 486, 489
GsuI	CTGGAG	3 cut(s)	192, 271, 418
HaeIII	GGCC	3 cut(s)	37, 273, 598
HapII	CCGG	4 cut(s)	34, 111, 256, 504
Hin1I	GRCGYC	2 cut(s)	116, 182
Hin1II	CATG	2 cut(s)	31, 552
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	137, 438
HpaII	CCGG	4 cut(s)	34, 111, 256, 504
HphI	GGTGA	2 cut(s)	70, 356
Hpy166II	GTNNAC	3 cut(s)	66, 476, 534
Hpy188I	TCNGA	3 cut(s)	136, 145, 335
Hpy188III	TCNNGA	4 cut(s)	172, 383, 435, 526
Hpy8I	GTNNAC	3 cut(s)	66, 476, 534
Hpy99I	CGWCG	5 cut(s)	56, 73, 153, 184, 187
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	4 cut(s)	68, 116, 182, 317
HpyCH4V	TGCA	7 cut(s)	4, 401, 417, 427, 464, 485, 593
HpySE526I	ACGT	4 cut(s)	68, 116, 182, 317
Hsp92I	GRCGYC	2 cut(s)	116, 182
Hsp92II	CATG	2 cut(s)	31, 552
Kzo9I	GATC	5 cut(s)	10, 30, 44, 145, 160
LmnI	GCTCC	2 cut(s)	290, 437
Lsp1109I	GCAGC	4 cut(s)	413, 476, 497, 500
LweI	GCATC	2 cut(s)	337, 414
MaeI	CTAG	3 cut(s)	351, 492, 537
MaeII	ACGT	4 cut(s)	68, 116, 182, 317
MaeIII	GTNAC	2 cut(s)	251, 439
MalI	GATC	5 cut(s)	12, 32, 46, 147, 162
MboI	GATC	5 cut(s)	10, 30, 44, 145, 160
MboII	GAAGA	5 cut(s)	115, 132, 371, 398, 520
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	447
MnlI	CCTC	5 cut(s)	33, 49, 213, 216, 571
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	2 cut(s)	467, 566
MspI	CCGG	4 cut(s)	34, 111, 256, 504
MspR9I	CCNGG	3 cut(s)	111, 112, 505
NciI	CCSGG	3 cut(s)	111, 112, 505
NdeII	GATC	5 cut(s)	10, 30, 44, 145, 160
NlaIII	CATG	2 cut(s)	31, 552
NlaIV	GGNNCC	1 cut(s)	433
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	439
NspV	TTCGAA	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	184
PkrI	GCNGC	5 cut(s)	272, 403, 466, 487, 490
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PspEI	GGTNACC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	184
PvuI	CGATCG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	3 cut(s)	87, 244, 557
RsaNI	GTAC	3 cut(s)	86, 243, 556
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	5 cut(s)	271, 402, 465, 486, 489
Sau3AI	GATC	5 cut(s)	10, 30, 44, 145, 160
Sau96I	GGNCC	1 cut(s)	272
ScaI	AGTACT	2 cut(s)	244, 557
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	3 cut(s)	111, 112, 505
SfaNI	GCATC	2 cut(s)	337, 414
SfuI	TTCGAA	1 cut(s)	322
SmaI	CCCGGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	422
SpeI	ACTAGT	1 cut(s)	536
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	270, 564
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	3 cut(s)	351, 492, 537
StyD4I	CCNGG	3 cut(s)	109, 110, 503
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	4 cut(s)	71, 119, 185, 320
TaqI	TCGA	3 cut(s)	9, 322, 527
TasI	AATT	1 cut(s)	228
TatI	WGTACW	2 cut(s)	242, 555
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	4 cut(s)	401, 464, 485, 488
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	397
TspMI	CCCGGG	1 cut(s)	110
TspRI	CASTG	1 cut(s)	295
Tth111I	GACNNNGTC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	228
XmaI	CCCGGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	475
XspI	CTAG	3 cut(s)	351, 492, 537
ZraI	GACGTC	2 cut(s)	117, 183
ZrmI	AGTACT	2 cut(s)	244, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.