Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001679

Physical Location & Seq

Genomic Coordinates Reverse (-)

65095966 .. 65096571

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG491000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGATCCGGCCGAGGAGATCAACCGACGAGGTGATGTCGACCGACGAGGTGATGTTGACGTCGTTTCGGGCAAATGTACCGTTCTCGTGGGAGAAGAAGCCCGGGACGTCCAAGCTCAAACCATCTTCTTCCGATCGTCGTAGTTTGGATCACTACTTCACGACCACGACGTCGTCCCTAAAGCTGATACCTCCTCCAGCTCGTCTCTCATCGCAAATTTCCATCAGTAGTACTGCTGGTAACCGGCAGACCCGTGGTGGCCCTTGTCTATGCTCCAGTGTTGATGTTCAGCCATCTGTTGCTACGTTTCGAAACCCATTCGGATTAACGGGTGGTGCTAGCCCTACCACTGCTAAAAATAATCGTCTTCAAGAAGACCCATTTCTTGCAGCTTTCATCAAATGCACCCAGATGCACGGCTCCAGAGTCACTAATAGTGGCAAAAGGTATGCAGCTGATAGTAAACATTATGCAGCAGCTAGGTTTTCTGCCGGGAAGAAAACCACCCTGATCTCGATGTTTACTAGTAGTTTCTCATGTAAGTACTCCTCCGCTGTTGGGGACGACAATATTGTAGTTGCAAGGCCACGCAAATCTCCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

21.89

Weight (kDa)

10.36

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22840 AT4G37740
fragaria_vesca	FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671
malus_domestica	MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1
prunus_persica	Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1
pyrus_communis	pycom02g15360 pycom08g06450 pycom15g26320
rosa_chinensis	RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051
rosa_laevigata	RLG00000010515 RLG00000010516 RLG00000017688
rosa_multiflora	Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012
rosa_roxburghii	Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200
rosa_samantha	Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100
rosa_wichuraiana	Rw2G016360 Rw6G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	169
AatII	GACGTC	3 cut(s)	62, 110, 173
AccI	GTMKAC	1 cut(s)	38
AciI	CCGC	1 cut(s)	552
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	216
AcyI	GRCGYC	3 cut(s)	59, 107, 170
AfaI	GTAC	3 cut(s)	78, 232, 545
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	1 cut(s)	371
AhlI	ACTAGT	1 cut(s)	524
AluBI	AGCT	6 cut(s)	115, 184, 200, 392, 455, 479
AluI	AGCT	6 cut(s)	115, 184, 200, 392, 455, 479
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	3 cut(s)	8, 259, 584
ApeKI	GCWGC	4 cut(s)	389, 452, 473, 476
ApoI	RAATTY	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	3 cut(s)	102, 103, 493
AsuHPI	GGTGA	2 cut(s)	43, 61
AsuII	TTCGAA	1 cut(s)	310
AsuNHI	GCTAGC	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	101
BauI	CACGAG	1 cut(s)	85
BbsI	GAAGAC	2 cut(s)	359, 381
BbvI	GCAGC	4 cut(s)	401, 464, 485, 488
BccI	CCATC	3 cut(s)	130, 230, 301
BceAI	ACGGC	1 cut(s)	433
BcnI	CCSGG	3 cut(s)	102, 103, 493
BcoDI	GTCTC	1 cut(s)	209
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	3 cut(s)	339, 480, 525
BisI	GCNGC	4 cut(s)	390, 453, 474, 477
BlsI	GCNGC	4 cut(s)	391, 454, 475, 478
BmcAI	AGTACT	2 cut(s)	232, 545
Bme1390I	CCNGG	3 cut(s)	102, 103, 493
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	3 cut(s)	102, 103, 493
BmsI	GCATC	1 cut(s)	402
BmtI	GCTAGC	1 cut(s)	342
BpiI	GAAGAC	2 cut(s)	359, 381
BpmI	CTGGAG	3 cut(s)	180, 259, 406
Bpu14I	TTCGAA	1 cut(s)	310
BpuMI	CCSGG	3 cut(s)	102, 103, 493
BsaHI	GRCGYC	3 cut(s)	59, 107, 170
BsaJI	CCNNGG	3 cut(s)	11, 101, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	11, 101, 253
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	3 cut(s)	28, 183, 538
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	401, 464, 485, 488
Bsh1285I	CGRYCG	3 cut(s)	11, 42, 136
BshFI	GGCC	3 cut(s)	10, 261, 586
BsiEI	CGRYCG	3 cut(s)	11, 42, 136
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	4 cut(s)	7, 102, 244, 492
BslFI	GGGAC	3 cut(s)	118, 160, 575
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	3 cut(s)	118, 160, 575
BsnI	GGCC	3 cut(s)	10, 261, 586
BsoBI	CYCGRG	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	3, 17, 133, 148, 510
BspACI	CCGC	1 cut(s)	552
BspANI	GGCC	3 cut(s)	10, 261, 586
BspLI	GGNNCC	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	11, 101, 253
BssMI	GATC	5 cut(s)	3, 17, 133, 148, 510
BssNI	GRCGYC	3 cut(s)	59, 107, 170
BssSI	CACGAG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	81
BstACI	GRCGYC	3 cut(s)	59, 107, 170
BstBI	TTCGAA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	253
BstEII	GGTNACC	1 cut(s)	239
BstKTI	GATC	5 cut(s)	6, 20, 136, 151, 513
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	5 cut(s)	3, 17, 133, 148, 510
BstMCI	CGRYCG	3 cut(s)	11, 42, 136
BstPI	GGTNACC	1 cut(s)	239
BstSCI	CCNGG	3 cut(s)	100, 101, 491
BstV1I	GCAGC	4 cut(s)	401, 464, 485, 488
BstV2I	GAAGAC	2 cut(s)	359, 381
BstZI	CGGCCG	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	10, 261, 586
BtgI	CCRYGG	1 cut(s)	253
BtgZI	GCGATG	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	283, 348
Cac8I	GCNNGC	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	260
Cfr9I	CCCGGG	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	77, 231, 544
CviAII	CATG	1 cut(s)	537
CviQI	GTAC	3 cut(s)	77, 231, 544
DpnI	GATC	5 cut(s)	5, 19, 135, 150, 512
DpnII	GATC	5 cut(s)	3, 17, 133, 148, 510
DrdI	GACNNNNNNGTC	1 cut(s)	169
DseDI	GACNNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
EclXI	CGGCCG	1 cut(s)	8
Eco52I	CGGCCG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	101
Eco91I	GGTNACC	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	239
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	1 cut(s)	540
FaiI	YATR	4 cut(s)	271, 450, 471, 538
FaqI	GGGAC	3 cut(s)	118, 160, 575
FatI	CATG	1 cut(s)	536
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	4 cut(s)	390, 453, 474, 477
Fsp4HI	GCNGC	4 cut(s)	390, 453, 474, 477
FspBI	CTAG	3 cut(s)	339, 480, 525
GluI	GCNGC	4 cut(s)	390, 453, 474, 477
GsuI	CTGGAG	3 cut(s)	180, 259, 406
HaeIII	GGCC	3 cut(s)	10, 261, 586
HapII	CCGG	4 cut(s)	7, 102, 244, 492
Hin1I	GRCGYC	3 cut(s)	59, 107, 170
Hin1II	CATG	1 cut(s)	540
HincII	GTYRAC	2 cut(s)	39, 57
HindII	GTYRAC	2 cut(s)	39, 57
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	4 cut(s)	7, 102, 244, 492
HphI	GGTGA	2 cut(s)	43, 61
Hpy166II	GTNNAC	4 cut(s)	39, 57, 464, 522
Hpy188I	TCNGA	2 cut(s)	133, 323
Hpy188III	TCNNGA	4 cut(s)	160, 371, 423, 514
Hpy8I	GTNNAC	4 cut(s)	39, 57, 464, 522
Hpy99I	CGWCG	6 cut(s)	29, 47, 64, 141, 172, 175
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	4 cut(s)	59, 107, 170, 305
HpyCH4V	TGCA	6 cut(s)	389, 405, 415, 452, 473, 581
HpySE526I	ACGT	4 cut(s)	59, 107, 170, 305
Hsp92I	GRCGYC	3 cut(s)	59, 107, 170
Hsp92II	CATG	1 cut(s)	540
Kzo9I	GATC	5 cut(s)	3, 17, 133, 148, 510
LmnI	GCTCC	2 cut(s)	278, 425
Lsp1109I	GCAGC	4 cut(s)	401, 464, 485, 488
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	3 cut(s)	339, 480, 525
MaeII	ACGT	4 cut(s)	59, 107, 170, 305
MaeIII	GTNAC	2 cut(s)	239, 427
MalI	GATC	5 cut(s)	5, 19, 135, 150, 512
MboI	GATC	5 cut(s)	3, 17, 133, 148, 510
MboII	GAAGA	6 cut(s)	106, 117, 120, 359, 386, 508
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	435
MnlI	CCTC	6 cut(s)	6, 22, 40, 201, 204, 559
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	455, 554
MspI	CCGG	4 cut(s)	7, 102, 244, 492
MspR9I	CCNGG	3 cut(s)	102, 103, 493
NciI	CCSGG	3 cut(s)	102, 103, 493
NdeII	GATC	5 cut(s)	3, 17, 133, 148, 510
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	1 cut(s)	540
NlaIV	GGNNCC	1 cut(s)	421
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	391, 454, 475, 478
Ple19I	CGATCG	1 cut(s)	136
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PspEI	GGTNACC	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	172
PvuI	CGATCG	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	3 cut(s)	78, 232, 545
RsaNI	GTAC	3 cut(s)	77, 231, 544
RseI	CAYNNNNRTG	1 cut(s)	410
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	4 cut(s)	390, 453, 474, 477
Sau3AI	GATC	5 cut(s)	3, 17, 133, 148, 510
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	2 cut(s)	232, 545
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	3 cut(s)	102, 103, 493
SfaNI	GCATC	1 cut(s)	402
SfuI	TTCGAA	1 cut(s)	310
SmaI	CCCGGG	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	552
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	3 cut(s)	339, 480, 525
StyD4I	CCNGG	3 cut(s)	100, 101, 491
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	4 cut(s)	62, 110, 173, 308
TaqI	TCGA	3 cut(s)	38, 310, 515
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	216
TatI	WGTACW	2 cut(s)	230, 543
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	2 cut(s)	283, 355
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	4 cut(s)	389, 452, 473, 476
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	385
TspMI	CCCGGG	1 cut(s)	101
TspRI	CASTG	2 cut(s)	283, 355
Tth111I	GACNNNGTC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	216
XmaI	CCCGGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	3 cut(s)	339, 480, 525
ZraI	GACGTC	3 cut(s)	60, 108, 171
ZrmI	AGTACT	2 cut(s)	232, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.