Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001679

Physical Location & Seq

Genomic Coordinates Forward (+)

24710518 .. 24711461

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32671.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCAGTGCAGTTTGATCGACGCACACACGCCATGATCCGGCCGAGGAGATCAACCGACGAGGGAAAATCGCCGTCGTTTCGGGTGAATGTACCCTTCTCGTGGGAGAGGAAGCCCGGGATGTCCAAGCTCAAACCGTATTCTTCCGATCGTCTTAGTTTGGATCACTACCTCACGACCACCACGTCGTCCCTTAAGCTGATACCTCCTCCAGCTCGTCTCTCATCGCAGCTTTCTGCTAATAGTAGTCCTGCTGGTCGACAGCGGCAGAGCCGGGGCGGCCTTTGTCCATGCTCCAGTGTTGATGTTCAGCCATCTGTTGCTACGACGTTCCGAAACTCATTCAGATTAACAGGTGACGCTAGTCCTAATAATCTTCTCCAGGAAGACCCATTCTTTGCTGCTTTCATCAAATGCACTCAGATGCACGGCTCCGGAATCACTAATAGTGGCAGATGGTATGCAGCTGATTATAAACATGATGATGCAGCAGCTAGGTTTTCTGCCAGGAACAAAAACACAATGTTGTCCTCCGCTATAGAGAAAGGGAGAGAGAGATCTGAGAGAGAGAGGAAGGAGAGGGTTTTAAGAAGAGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.56

Weight (kDa)

10.34

Isoelectric Point (pI)

71.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22840 AT4G37740
fragaria_vesca	FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671
malus_domestica	MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1
prunus_persica	Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1
pyrus_communis	pycom02g15360 pycom08g06450 pycom15g26320
rosa_chinensis	RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051
rosa_laevigata	RLG00000010515 RLG00000010516 RLG00000017688
rosa_multiflora	Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012
rosa_roxburghii	Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200
rosa_samantha	Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100
rosa_wichuraiana	Rw2G016360 Rw6G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AasI	GACNNNNNNGTC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	259
AccIII	TCCGGA	1 cut(s)	434
AciI	CCGC	3 cut(s)	265, 279, 534
AclWI	GGATC	2 cut(s)	31, 171
AcoI	YGGCCR	1 cut(s)	41
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	39, 102
AflII	CTTAAG	1 cut(s)	194
AjiI	CACGTC	1 cut(s)	186
AjnI	CCWGG	2 cut(s)	381, 506
AluBI	AGCT	6 cut(s)	130, 199, 215, 232, 467, 494
AluI	AGCT	6 cut(s)	130, 199, 215, 232, 467, 494
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	31, 171
Ama87I	CYCGRG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	434
AoxI	GGCC	2 cut(s)	41, 280
ApeKI	GCWGC	5 cut(s)	229, 401, 464, 488, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AsuC2I	CCSGG	3 cut(s)	117, 118, 275
AsuHPI	GGTGA	2 cut(s)	97, 368
AvaI	CYCGRG	1 cut(s)	116
BauI	CACGAG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	5 cut(s)	241, 388, 476, 500, 503
BccI	CCATC	2 cut(s)	322, 450
BceAI	ACGGC	2 cut(s)	58, 445
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	383, 508
BcnI	CCSGG	3 cut(s)	117, 118, 275
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	2 cut(s)	363, 495
BfmI	CTRYAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	194
BglI	GCCNNNNNGGC	1 cut(s)	279
BglII	AGATCT	1 cut(s)	557
BisI	GCNGC	7 cut(s)	230, 266, 280, 402, 465, 489, 492
BlsI	GCNGC	7 cut(s)	231, 267, 281, 403, 466, 490, 493
Bme1390I	CCNGG	5 cut(s)	117, 118, 275, 383, 508
BmeT110I	CYCGRG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	5 cut(s)	117, 118, 275, 383, 508
BmsI	GCATC	2 cut(s)	414, 475
BoxI	GACNNNNGTC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	3 cut(s)	195, 280, 365
BpuMI	CCSGG	3 cut(s)	117, 118, 275
BsaJI	CCNNGG	3 cut(s)	44, 116, 274
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 102
Bse1I	ACTGG	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	383, 508
BseDI	CCNNGG	3 cut(s)	44, 116, 274
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	39, 102
BseMII	CTCAG	2 cut(s)	434, 552
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	2 cut(s)	61, 198
BseX3I	CGGCCG	1 cut(s)	41
BseXI	GCAGC	5 cut(s)	241, 388, 476, 500, 503
BsgI	GTGCAG	1 cut(s)	29
Bsh1285I	CGRYCG	2 cut(s)	44, 151
BshFI	GGCC	2 cut(s)	43, 282
BsiEI	CGRYCG	2 cut(s)	44, 151
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	4 cut(s)	40, 117, 274, 435
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	39, 102
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	43, 282
BsoBI	CYCGRG	1 cut(s)	116
Bsp13I	TCCGGA	1 cut(s)	434
Bsp143I	GATC	6 cut(s)	16, 36, 50, 148, 163, 557
BspACI	CCGC	3 cut(s)	265, 279, 534
BspANI	GGCC	2 cut(s)	43, 282
BspCNI	CTCAG	2 cut(s)	433, 553
BspEI	TCCGGA	1 cut(s)	434
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	2 cut(s)	31, 171
BspTI	CTTAAG	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	44, 116, 274
BssMI	GATC	6 cut(s)	16, 36, 50, 148, 163, 557
BssSI	CACGAG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	2 cut(s)	383, 508
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	586
BstAFI	CTTAAG	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	155, 420, 561
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	6 cut(s)	19, 39, 53, 151, 166, 560
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	6 cut(s)	16, 36, 50, 148, 163, 557
BstMCI	CGRYCG	2 cut(s)	44, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	2 cut(s)	383, 508
BstPAI	GACNNNNGTC	1 cut(s)	363
BstSCI	CCNGG	5 cut(s)	115, 116, 273, 381, 506
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	5 cut(s)	241, 388, 476, 500, 503
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BstZI	CGGCCG	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	43, 282
BtgZI	GCGATG	1 cut(s)	210
BtrI	CACGTC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	12, 304
Cfr9I	CCCGGG	1 cut(s)	116
CseI	GACGC	2 cut(s)	30, 368
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	3 cut(s)	34, 291, 479
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	155, 420, 561
DpnI	GATC	6 cut(s)	18, 38, 52, 150, 165, 559
DpnII	GATC	6 cut(s)	16, 36, 50, 148, 163, 557
DrdI	GACNNNNNNGTC	1 cut(s)	184
DseDI	GACNNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	41
EagI	CGGCCG	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	586
EclXI	CGGCCG	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	381, 506
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	3 cut(s)	37, 294, 482
FaiI	YATR	6 cut(s)	35, 292, 462, 474, 480, 539
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	3 cut(s)	33, 290, 478
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	7 cut(s)	230, 266, 280, 402, 465, 489, 492
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	7 cut(s)	230, 266, 280, 402, 465, 489, 492
FspBI	CTAG	2 cut(s)	363, 495
GluI	GCNGC	7 cut(s)	230, 266, 280, 402, 465, 489, 492
GsuI	CTGGAG	3 cut(s)	195, 280, 365
HaeIII	GGCC	2 cut(s)	43, 282
HapII	CCGG	4 cut(s)	40, 117, 274, 435
HgaI	GACGC	2 cut(s)	30, 368
Hin1II	CATG	3 cut(s)	37, 294, 482
HincII	GTYRAC	1 cut(s)	260
HindII	GTYRAC	1 cut(s)	260
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	4 cut(s)	40, 117, 274, 435
HphI	GGTGA	2 cut(s)	97, 368
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	5 cut(s)	148, 335, 347, 423, 562
Hpy188III	TCNNGA	2 cut(s)	175, 435
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	5 cut(s)	24, 62, 79, 190, 331
HpyAV	CCTTC	2 cut(s)	106, 568
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	2 cut(s)	185, 329
HpyCH4V	TGCA	5 cut(s)	10, 417, 427, 464, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	3 cut(s)	155, 420, 561
HpySE526I	ACGT	2 cut(s)	185, 329
Hsp92II	CATG	3 cut(s)	37, 294, 482
Kpn2I	TCCGGA	1 cut(s)	434
Kzo9I	GATC	6 cut(s)	16, 36, 50, 148, 163, 557
LmnI	GCTCC	2 cut(s)	299, 437
Lsp1109I	GCAGC	5 cut(s)	241, 388, 476, 500, 503
LweI	GCATC	2 cut(s)	414, 475
MaeI	CTAG	2 cut(s)	363, 495
MaeII	ACGT	2 cut(s)	185, 329
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	6 cut(s)	18, 38, 52, 150, 165, 559
MboI	GATC	6 cut(s)	16, 36, 50, 148, 163, 557
MboII	GAAGA	4 cut(s)	135, 368, 398, 603
MflI	RGATCY	1 cut(s)	557
MroI	TCCGGA	1 cut(s)	434
MseI	TTAA	3 cut(s)	195, 350, 587
MslI	CAYNNNNRTG	2 cut(s)	422, 483
MspA1I	CMGCKG	2 cut(s)	265, 467
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	4 cut(s)	40, 117, 274, 435
MspR9I	CCNGG	5 cut(s)	117, 118, 275, 383, 508
MvaI	CCWGG	2 cut(s)	383, 508
MwoI	GCNNNNNNNGC	1 cut(s)	279
NciI	CCSGG	3 cut(s)	117, 118, 275
NdeII	GATC	6 cut(s)	16, 36, 50, 148, 163, 557
NlaIII	CATG	3 cut(s)	37, 294, 482
NlaIV	GGNNCC	1 cut(s)	433
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	438
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	7 cut(s)	231, 267, 281, 403, 466, 490, 493
Ple19I	CGATCG	1 cut(s)	151
PshAI	GACNNNNGTC	1 cut(s)	363
PsiI	TTATAA	1 cut(s)	474
Psp6I	CCWGG	2 cut(s)	381, 506
PspGI	CCWGG	2 cut(s)	381, 506
PspN4I	GGNNCC	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	557
PvuI	CGATCG	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	2 cut(s)	422, 483
SalI	GTCGAC	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	195, 350, 587
SatI	GCNGC	7 cut(s)	230, 266, 280, 402, 465, 489, 492
Sau3AI	GATC	6 cut(s)	16, 36, 50, 148, 163, 557
ScrFI	CCNGG	5 cut(s)	117, 118, 275, 383, 508
SfaNI	GCATC	2 cut(s)	414, 475
SfcI	CTRYAG	1 cut(s)	537
SmaI	CCCGGG	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	422, 483
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SsiI	CCGC	3 cut(s)	265, 279, 534
SspMI	CTAG	2 cut(s)	363, 495
StyD4I	CCNGG	5 cut(s)	115, 116, 273, 381, 506
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	2 cut(s)	188, 332
TaqI	TCGA	2 cut(s)	19, 259
TauI	GCSGC	2 cut(s)	268, 282
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	3 cut(s)	195, 350, 587
Tru9I	TTAA	3 cut(s)	195, 350, 587
TscAI	CASTG	2 cut(s)	12, 304
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	5 cut(s)	229, 401, 464, 488, 491
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	397
TspMI	CCCGGG	1 cut(s)	116
TspRI	CASTG	2 cut(s)	12, 304
Vha464I	CTTAAG	1 cut(s)	194
XmaI	CCCGGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	259
XspI	CTAG	2 cut(s)	363, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.