Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001679

Physical Location & Seq

Genomic Coordinates Forward (+)

2323086 .. 2323700

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010516

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCAGCTCGATCAACGCACATACGCCATGATCCGGCCGAGGAGATCAACCGACGAAGTGATGTCGACGTCGTTTCGGGCAAATGTACCGTTCTCGTGGGAGAAGAAGCCCGGGACGTCCAAGCTCAAATCATCTTCTTCCGATCGTCGTAGTTTGGATCACTACTTCACGACCACGACGTCGTCCCTAAAGCTGATACTTCCTCCAGCTCGTCTCTCATCCCAAATTTCCATCAGTAGTACTGCTGGTAACCGGCAGACCCGTGGCGGCCCTTGTCTATGCTCCAGTGTTGATGTTCAGCCATCTGTTGCTACGTTTCGAAACCCATTCGGATTAACGGGTGGTGCTAGTCCTACTACTGCTAAAAATAATCGCCTTCAAGAAGACCCATTTCTTGCAGCTTTCATCAAATGCACCCAGATGCACGGCTCCAGAGTCACTAATAGTGGCAAAAGGTATGCAGCTGATAGTAAACATTATGCAGCAGCTAGGTTTTCTGCCGGGAAGAAAACCACCCTGTTCTCGATGTTTACTAGTAGTTTCTCATGTAAGTACTCCTCCGCTGTTAGGGACGACAATATTGTAGTTGCAAGGCCACGCAAATCTCCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.45

Weight (kDa)

10.6

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22840 AT4G37740
fragaria_vesca	FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671
malus_domestica	MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1
prunus_persica	Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1
pyrus_communis	pycom02g15360 pycom08g06450 pycom15g26320
rosa_chinensis	RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051
rosa_laevigata	RLG00000010515 RLG00000010516 RLG00000017688
rosa_multiflora	Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012
rosa_roxburghii	Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200
rosa_samantha	Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100
rosa_wichuraiana	Rw2G016360 Rw6G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
AatII	GACGTC	3 cut(s)	71, 119, 182
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	2 cut(s)	267, 561
AclWI	GGATC	2 cut(s)	25, 165
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	225
AcyI	GRCGYC	3 cut(s)	68, 116, 179
AfaI	GTAC	3 cut(s)	87, 241, 554
AfiI	CCNNNNNNNGG	2 cut(s)	33, 567
AgsI	TTSAA	1 cut(s)	380
AhlI	ACTAGT	1 cut(s)	533
AluBI	AGCT	7 cut(s)	7, 124, 193, 209, 401, 464, 488
AluI	AGCT	7 cut(s)	7, 124, 193, 209, 401, 464, 488
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	25, 165
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	35, 268, 593
ApeKI	GCWGC	5 cut(s)	4, 398, 461, 482, 485
ApoI	RAATTY	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	3 cut(s)	111, 112, 502
AsuII	TTCGAA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	110
BauI	CACGAG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	5 cut(s)	16, 410, 473, 494, 497
BccI	CCATC	2 cut(s)	239, 310
BceAI	ACGGC	1 cut(s)	442
BcnI	CCSGG	3 cut(s)	111, 112, 502
BcoDI	GTCTC	1 cut(s)	218
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	3 cut(s)	348, 489, 534
BisI	GCNGC	6 cut(s)	5, 268, 399, 462, 483, 486
BlsI	GCNGC	6 cut(s)	6, 269, 400, 463, 484, 487
BmcAI	AGTACT	2 cut(s)	241, 554
Bme1390I	CCNGG	3 cut(s)	111, 112, 502
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	3 cut(s)	111, 112, 502
BmsI	GCATC	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	3 cut(s)	189, 268, 415
Bpu14I	TTCGAA	1 cut(s)	319
BpuMI	CCSGG	3 cut(s)	111, 112, 502
BsaHI	GRCGYC	3 cut(s)	68, 116, 179
BsaJI	CCNNGG	3 cut(s)	38, 110, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 567
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	38, 110, 262
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	33, 567
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	2 cut(s)	55, 547
BseX3I	CGGCCG	1 cut(s)	35
BseXI	GCAGC	5 cut(s)	16, 410, 473, 494, 497
Bsh1285I	CGRYCG	2 cut(s)	38, 145
BshFI	GGCC	3 cut(s)	37, 270, 595
BsiEI	CGRYCG	2 cut(s)	38, 145
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	34, 111, 253, 501
BslFI	GGGAC	3 cut(s)	127, 169, 584
BslI	CCNNNNNNNGG	2 cut(s)	33, 567
BsmAI	GTCTC	1 cut(s)	218
BsmBI	CGTCTC	1 cut(s)	218
BsmFI	GGGAC	3 cut(s)	127, 169, 584
BsnI	GGCC	3 cut(s)	37, 270, 595
BsoBI	CYCGRG	1 cut(s)	110
Bsp119I	TTCGAA	1 cut(s)	319
Bsp143I	GATC	5 cut(s)	10, 30, 44, 142, 157
BspACI	CCGC	2 cut(s)	267, 561
BspANI	GGCC	3 cut(s)	37, 270, 595
BspLI	GGNNCC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	25, 165
BspT104I	TTCGAA	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	3 cut(s)	38, 110, 262
BssMI	GATC	5 cut(s)	10, 30, 44, 142, 157
BssNI	GRCGYC	3 cut(s)	68, 116, 179
BssSI	CACGAG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	90
BstACI	GRCGYC	3 cut(s)	68, 116, 179
BstBI	TTCGAA	1 cut(s)	319
BstDSI	CCRYGG	1 cut(s)	262
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	5 cut(s)	13, 33, 47, 145, 160
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	5 cut(s)	10, 30, 44, 142, 157
BstMCI	CGRYCG	2 cut(s)	38, 145
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	109, 110, 500
BstV1I	GCAGC	5 cut(s)	16, 410, 473, 494, 497
BstV2I	GAAGAC	1 cut(s)	390
BstZI	CGGCCG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	37, 270, 595
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	269
Cfr9I	CCCGGG	1 cut(s)	110
Csp6I	GTAC	3 cut(s)	86, 240, 553
CviAII	CATG	2 cut(s)	28, 546
CviQI	GTAC	3 cut(s)	86, 240, 553
DpnI	GATC	5 cut(s)	12, 32, 46, 144, 159
DpnII	GATC	5 cut(s)	10, 30, 44, 142, 157
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	35
EagI	CGGCCG	1 cut(s)	35
EclXI	CGGCCG	1 cut(s)	35
Eco52I	CGGCCG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	248
Esp3I	CGTCTC	1 cut(s)	218
FaeI	CATG	2 cut(s)	31, 549
FaiI	YATR	6 cut(s)	22, 29, 280, 459, 480, 547
FaqI	GGGAC	3 cut(s)	127, 169, 584
FatI	CATG	2 cut(s)	27, 545
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	6 cut(s)	5, 268, 399, 462, 483, 486
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	6 cut(s)	5, 268, 399, 462, 483, 486
FspBI	CTAG	3 cut(s)	348, 489, 534
GluI	GCNGC	6 cut(s)	5, 268, 399, 462, 483, 486
GsuI	CTGGAG	3 cut(s)	189, 268, 415
HaeIII	GGCC	3 cut(s)	37, 270, 595
HapII	CCGG	4 cut(s)	34, 111, 253, 501
Hin1I	GRCGYC	3 cut(s)	68, 116, 179
Hin1II	CATG	2 cut(s)	31, 549
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	435
HpaII	CCGG	4 cut(s)	34, 111, 253, 501
Hpy166II	GTNNAC	3 cut(s)	66, 473, 531
Hpy188I	TCNGA	2 cut(s)	142, 332
Hpy188III	TCNNGA	4 cut(s)	169, 380, 432, 523
Hpy8I	GTNNAC	3 cut(s)	66, 473, 531
Hpy99I	CGWCG	6 cut(s)	56, 70, 73, 150, 181, 184
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	4 cut(s)	68, 116, 179, 314
HpyCH4V	TGCA	7 cut(s)	4, 398, 414, 424, 461, 482, 590
HpySE526I	ACGT	4 cut(s)	68, 116, 179, 314
Hsp92I	GRCGYC	3 cut(s)	68, 116, 179
Hsp92II	CATG	2 cut(s)	31, 549
Kzo9I	GATC	5 cut(s)	10, 30, 44, 142, 157
LmnI	GCTCC	2 cut(s)	287, 434
Lsp1109I	GCAGC	5 cut(s)	16, 410, 473, 494, 497
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	3 cut(s)	348, 489, 534
MaeII	ACGT	4 cut(s)	68, 116, 179, 314
MaeIII	GTNAC	2 cut(s)	248, 436
MalI	GATC	5 cut(s)	12, 32, 46, 144, 159
MboI	GATC	5 cut(s)	10, 30, 44, 142, 157
MboII	GAAGA	5 cut(s)	115, 126, 129, 395, 517
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	444
MnlI	CCTC	3 cut(s)	33, 213, 568
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	2 cut(s)	464, 563
MspI	CCGG	4 cut(s)	34, 111, 253, 501
MspR9I	CCNGG	3 cut(s)	111, 112, 502
NciI	CCSGG	3 cut(s)	111, 112, 502
NdeII	GATC	5 cut(s)	10, 30, 44, 142, 157
NlaIII	CATG	2 cut(s)	31, 549
NlaIV	GGNNCC	1 cut(s)	430
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	181
PkrI	GCNGC	6 cut(s)	6, 269, 400, 463, 484, 487
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PspEI	GGTNACC	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	3 cut(s)	87, 241, 554
RsaNI	GTAC	3 cut(s)	86, 240, 553
RseI	CAYNNNNRTG	1 cut(s)	419
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	6 cut(s)	5, 268, 399, 462, 483, 486
Sau3AI	GATC	5 cut(s)	10, 30, 44, 142, 157
Sau96I	GGNCC	1 cut(s)	269
ScaI	AGTACT	2 cut(s)	241, 554
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	3 cut(s)	111, 112, 502
SfaNI	GCATC	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	319
SmaI	CCCGGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	419
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	267, 561
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	3 cut(s)	348, 489, 534
StyD4I	CCNGG	3 cut(s)	109, 110, 500
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	4 cut(s)	71, 119, 182, 317
TaqI	TCGA	4 cut(s)	9, 65, 319, 524
TasI	AATT	1 cut(s)	225
TatI	WGTACW	2 cut(s)	239, 552
TauI	GCSGC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	5 cut(s)	4, 398, 461, 482, 485
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	394
TspMI	CCCGGG	1 cut(s)	110
TspRI	CASTG	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	225
XmaI	CCCGGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	3 cut(s)	348, 489, 534
ZraI	GACGTC	3 cut(s)	69, 117, 180
ZrmI	AGTACT	2 cut(s)	241, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.