pycom08g06450

Growth-regulating factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
5037777 .. 5040611
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06450.3

Sequence Viewer

Length: 1710 bp
ATGGATTTTGGGGTGGTGGGTTTTGATGGGTTGGGGGGTTGTTTTTCAGATTCTGGTTTTCCTTTTGCTGCTACTTCATCGGCAGCAGATCAGGAGGCAGAGAAGCATAAGTGGCTGTACGGATCCGGGTCTCACAGGCAGGGAAGATCTGCCGACGAGGGGGAGGATTGGAGGAGCTCTAAACTTGCAAAGACTGATGATTTTTCAGCTTCCAAAGCAACGCAACAGCAACACCAGCAGCAGCAGTTACTGAGCTTCTCTAATTCTCCCAATTCAGAATCTATCTTGGTTGAAAAGAATGCCACAATGCCTTACTTTCATCAAACATTATCTGCTTACAATACAAGTTCTGCAGGGCAAAATACTGGGAGTTTGAGTAATGGAGGAGCTGGCATGCATTGGAGTTTAGCAGGAGGCAGAGGACCTTTCACGCCATCCCAATGGATGGAGCTAGAACACCAGGCCTTGATCTACAAATACATCACTGCAAATATGCCTATTCCATCGAATTTGCTCTTCCCAATCAAGAAGGCTCTTGATTCTGCTGGATTTTCGACGTTCCCGAACGGACTTCTCAGGCCCAATTCATTGGGATGGGGTTCTATCCATTTGGGAATTTCCAACAACACTGATCCTGAGCCGGGAAGGTGTCGTAGGACCGACGGCAAGAAATGGCGGTGCTGGAGAGATGCCGTTCCTGACCAAAAGTATTGTGAGCGGCACATGAACAGAGGCCGCCACCGTTCAAGAAAGCCTGTGGAAGGCCACACCGGCCACACCGGAACCACCACCACCACCACATCAAAGCAGCCTTTGGCTTCTTCGTCATCAACATCCGTAGTGTCCGTTCCCGGTGGCGGTGGTGGCAGCAGCCTTGCTGTTGCCAACCAGCAGCTCAAGAGCTTGCAGCAGCCTGCTGCATCTAATTCTTCTGCAGCAAGCACTAAGACGAGCAGGATGTTCATGAACAAAGAGAAGGCGGGCGAGAGAATTCAACACACGCCAGGCCTCTCCATGCTGTCGAAAGAAAACCCATTCTTGACTCAGAAACAGCAAATCCGACATGAAGAGTCCCCGAGAACAGAGTTCGGGCTTGTCCTCTCTGACTCCCTCCTAAACCCTTCACAGAAAACGTCATACCCTGCAGAAACAAATTCACAACACCATTCCCTTCTCCACTTCATCGACGATTGCCCTAAAACTCCATCCGACTGCCAACCTGTTTCGTGGCCTAACCAACTCGACATGCAATCGGACAGAACCCAATTATCAATTTCGATCCCCATAGCTTCCTCCACAAGCAATGAGACTCTCTCACCGCTCCATCTCCCAAGGGAACTAGAGTCCCCTGCCTCAATGGGATTGGGAGTAGGCAGCGGTCACGCCCTCAGTGAACAAAACAACATCAAGCAAGCGAATTGGATTCCAACGGCTTGGGAGACTTCGGTTGGGGGTCCTCTAGGGGAAGTTCTGCACAATCCCAACAGCAGCAACAGTGCAGCAGAATACAAGAACAACTCTTCAGTCCTTAATCTGATGACTGGGGGCAGCTGGGACAACAATAACAATAGCCCTTCGCCTTTAGGGTCATCTCCAACTGGGGTCCTACAGAAGACGGCGTTTGGGTCTCTGTCGAATAGCAGTGCAGGGAGCAGTCCAAGAGCAGAGAATAATAATAGAAGCCATGAAGGGTTTAGCCTTTTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

570

Amino Acids

61.25

Weight (kDa)

7.75

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 445
AccBSI CCGCTC 2 cut(s) 718, 1321
AciI CCGC 7 cut(s) 676, 718, 736, 858, 980, 1319, 1377
AclWI GGATC 4 cut(s) 117, 130, 626, 1273
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 4 cut(s) 508, 615, 990, 1153
AcuI CTGAAG 1 cut(s) 1506
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 5 cut(s) 159, 445, 641, 761, 857
AgsI TTSAA 3 cut(s) 293, 747, 995
AjnI CCWGG 2 cut(s) 459, 1003
AluBI AGCT 9 cut(s) 177, 209, 255, 389, 451, 895, 903, 1289, 1551
AluI AGCT 9 cut(s) 177, 209, 255, 389, 451, 895, 903, 1289, 1551
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 4 cut(s) 135, 1301, 1433, 1632
AlwI GGATC 4 cut(s) 117, 130, 626, 1273
AlwNI CAGNNNCTG 2 cut(s) 53, 250
Ama87I CYCGRG 1 cut(s) 1075
AoxI GGCC 7 cut(s) 462, 578, 733, 763, 772, 1006, 1229
ApoI RAATTY 4 cut(s) 508, 615, 990, 1153
AspS9I GGNCC 5 cut(s) 422, 579, 657, 1454, 1603
AsuC2I CCSGG 3 cut(s) 127, 642, 852
AsuHPI GGTGA 1 cut(s) 1308
AvaI CYCGRG 1 cut(s) 1075
AvaII GGWCC 4 cut(s) 422, 657, 1454, 1603
BamHI GGATCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 1619
Bbv12I GWGCWC 1 cut(s) 179
BccI CCATC 7 cut(s) 20, 439, 442, 511, 588, 1213, 1332
BceAI ACGGC 4 cut(s) 677, 679, 1446, 1632
BciT130I CCWGG 2 cut(s) 461, 1005
BcnI CCSGG 3 cut(s) 127, 642, 852
BcoDI GTCTC 4 cut(s) 135, 1301, 1433, 1632
BfaI CTAG 3 cut(s) 452, 1340, 1460
BfmI CTRYAG 4 cut(s) 351, 933, 1143, 1607
BglI GCCNNNNNGGC 1 cut(s) 771
BglII AGATCT 1 cut(s) 146
Bme1390I CCNGG 5 cut(s) 127, 461, 642, 852, 1005
Bme18I GGWCC 4 cut(s) 422, 657, 1454, 1603
BmeT110I CYCGRG 1 cut(s) 1075
BmgT120I GGNCC 5 cut(s) 422, 579, 657, 1454, 1603
BmiI GGNNCC 4 cut(s) 124, 784, 1455, 1604
BmrFI CCNGG 5 cut(s) 127, 461, 642, 852, 1005
BmrI ACTGGG 3 cut(s) 375, 1551, 1608
BmsI GCATC 2 cut(s) 679, 929
BmuI ACTGGG 3 cut(s) 375, 1551, 1608
BpiI GAAGAC 1 cut(s) 1619
BplI GAGNNNNNCTC 2 cut(s) 1298, 1330
BpmI CTGGAG 1 cut(s) 703
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 881
BpuMI CCSGG 3 cut(s) 127, 642, 852
BsaI GGTCTC 2 cut(s) 135, 1632
BsaJI CCNNGG 1 cut(s) 1331
BsaWI WCCGGW 1 cut(s) 779
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 5 cut(s) 159, 445, 641, 761, 857
Bse118I RCCGGY 1 cut(s) 770
Bse1I ACTGG 3 cut(s) 370, 1546, 1603
Bse3DI GCAATG 1 cut(s) 1309
BseBI CCWGG 2 cut(s) 461, 1005
BseDI CCNNGG 1 cut(s) 1331
BseGI GGATG 6 cut(s) 434, 450, 599, 833, 963, 1205
BseLI CCNNNNNNNGG 5 cut(s) 159, 445, 641, 761, 857
BseMI GCAATG 1 cut(s) 1309
BseMII CTCAG 5 cut(s) 242, 589, 627, 1058, 1402
BseNI ACTGG 3 cut(s) 370, 1546, 1603
BseRI GAGGAG 2 cut(s) 187, 399
BseYI CCCAGC 1 cut(s) 1551
BsgI GTGCAG 3 cut(s) 1457, 1518, 1665
BshFI GGCC 7 cut(s) 464, 580, 735, 765, 774, 1008, 1231
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 1075
BsiSI CCGG 5 cut(s) 126, 641, 771, 780, 852
BslFI GGGAC 3 cut(s) 1057, 1330, 1568
BslI CCNNNNNNNGG 5 cut(s) 159, 445, 641, 761, 857
BsmAI GTCTC 4 cut(s) 135, 1301, 1433, 1632
BsmFI GGGAC 3 cut(s) 1057, 1330, 1568
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 7 cut(s) 464, 580, 735, 765, 774, 1008, 1231
Bso31I GGTCTC 2 cut(s) 135, 1632
BsoBI CYCGRG 1 cut(s) 1075
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 6 cut(s) 88, 122, 146, 468, 631, 1278
BspACI CCGC 7 cut(s) 676, 718, 736, 858, 980, 1319, 1377
BspANI GGCC 7 cut(s) 464, 580, 735, 765, 774, 1008, 1231
BspCNI CTCAG 5 cut(s) 243, 588, 628, 1057, 1401
BspHI TCATGA 1 cut(s) 963
BspLI GGNNCC 4 cut(s) 124, 784, 1455, 1604
BspMAI CTGCAG 3 cut(s) 355, 937, 1147
BspPI GGATC 4 cut(s) 117, 130, 626, 1273
BspQI GCTCTTC 1 cut(s) 521
BspTNI GGTCTC 2 cut(s) 135, 1632
BsrBI CCGCTC 2 cut(s) 718, 1321
BsrDI GCAATG 1 cut(s) 1309
BsrFI RCCGGY 1 cut(s) 770
BsrI ACTGG 3 cut(s) 370, 1546, 1603
BssAI RCCGGY 1 cut(s) 770
BssECI CCNNGG 1 cut(s) 1331
BssMI GATC 6 cut(s) 88, 122, 146, 468, 631, 1278
BssT1I CCWWGG 1 cut(s) 1331
Bst2UI CCWGG 2 cut(s) 461, 1005
Bst4CI ACNGT 2 cut(s) 743, 1496
Bst6I CTCTTC 3 cut(s) 521, 1062, 1525
BstC8I GCNNGC 7 cut(s) 391, 395, 905, 915, 940, 982, 1413
BstDEI CTNAG 6 cut(s) 251, 575, 636, 945, 1044, 1388
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 6 cut(s) 434, 450, 599, 833, 963, 1205
BstKTI GATC 6 cut(s) 91, 125, 149, 471, 634, 1281
BstMAI GTCTC 4 cut(s) 135, 1301, 1433, 1632
BstMBI GATC 6 cut(s) 88, 122, 146, 468, 631, 1278
BstMWI GCNNNNNNNGC 5 cut(s) 112, 215, 235, 771, 864
BstNI CCWGG 2 cut(s) 461, 1005
BstNSI RCATGY 2 cut(s) 397, 1249
BstSCI CCNGG 5 cut(s) 125, 459, 640, 850, 1003
BstSFI CTRYAG 4 cut(s) 351, 933, 1143, 1607
BstV2I GAAGAC 1 cut(s) 1619
BstX2I RGATCY 2 cut(s) 122, 146
BstXI CCANNNNNNTGG 3 cut(s) 441, 589, 1434
BstYI RGATCY 2 cut(s) 122, 146
BsuRI GGCC 7 cut(s) 464, 580, 735, 765, 774, 1008, 1231
BtsCI GGATG 6 cut(s) 434, 450, 599, 833, 963, 1205
BtsI GCAGTG 2 cut(s) 483, 1648
BtsIMutI CAGTG 5 cut(s) 483, 627, 1396, 1501, 1648
Cac8I GCNNGC 7 cut(s) 391, 395, 905, 915, 940, 982, 1413
CaiI CAGNNNCTG 2 cut(s) 53, 250
CciI TCATGA 1 cut(s) 963
Cfr10I RCCGGY 1 cut(s) 770
Cfr13I GGNCC 5 cut(s) 422, 579, 657, 1454, 1603
Csp6I GTAC 1 cut(s) 118
CviAII CATG 7 cut(s) 394, 724, 964, 1015, 1064, 1246, 1685
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 6 cut(s) 251, 575, 636, 945, 1044, 1388
DpnI GATC 6 cut(s) 90, 124, 148, 470, 633, 1280
DpnII GATC 6 cut(s) 88, 122, 146, 468, 631, 1278
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 3 cut(s) 521, 1062, 1525
EarI CTCTTC 3 cut(s) 521, 1062, 1525
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 1331
Eco147I AGGCCT 2 cut(s) 464, 1008
Eco24I GRGCYC 1 cut(s) 179
Eco31I GGTCTC 2 cut(s) 135, 1632
Eco47I GGWCC 4 cut(s) 422, 657, 1454, 1603
Eco53kI GAGCTC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 1506
Eco88I CYCGRG 1 cut(s) 1075
EcoICRI GAGCTC 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoO109I RGGNCCY 3 cut(s) 422, 1454, 1603
EcoRI GAATTC 1 cut(s) 990
EcoRII CCWGG 2 cut(s) 459, 1003
EcoT14I CCWWGG 1 cut(s) 1331
EcoT22I ATGCAT 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 1331
FaeI CATG 7 cut(s) 397, 727, 967, 1018, 1067, 1249, 1688
FaqI GGGAC 3 cut(s) 1057, 1330, 1568
FatI CATG 7 cut(s) 393, 723, 963, 1014, 1063, 1245, 1684
FauI CCCGC 1 cut(s) 973
FokI GGATG 6 cut(s) 421, 457, 606, 820, 970, 1192
FriOI GRGCYC 1 cut(s) 179
FspBI CTAG 3 cut(s) 452, 1340, 1460
GsaI CCCAGC 1 cut(s) 1555
GsuI CTGGAG 1 cut(s) 703
HaeIII GGCC 7 cut(s) 464, 580, 735, 765, 774, 1008, 1231
HapII CCGG 5 cut(s) 126, 641, 771, 780, 852
Hin1II CATG 7 cut(s) 397, 727, 967, 1018, 1067, 1249, 1688
HinfI GANTC 9 cut(s) 50, 278, 539, 1042, 1070, 1106, 1309, 1343, 1423
HpaII CCGG 5 cut(s) 126, 641, 771, 780, 852
HphI GGTGA 1 cut(s) 1308
Hpy166II GTNNAC 1 cut(s) 1394
Hpy188I TCNGA 8 cut(s) 49, 277, 1047, 1061, 1105, 1210, 1255, 1536
Hpy8I GTNNAC 1 cut(s) 1394
Hpy99I CGWCG 4 cut(s) 158, 559, 665, 1190
HpyAV CCTTC 8 cut(s) 523, 639, 755, 970, 1131, 1181, 1584, 1682
HpyCH4III ACNGT 2 cut(s) 743, 1496
HpyCH4IV ACGT 2 cut(s) 557, 1133
HpyF10VI GCNNNNNNNGC 5 cut(s) 112, 215, 235, 771, 864
HpyF3I CTNAG 6 cut(s) 251, 575, 636, 945, 1044, 1388
HpySE526I ACGT 2 cut(s) 557, 1133
Hsp92II CATG 7 cut(s) 397, 727, 967, 1018, 1067, 1249, 1688
Kzo9I GATC 6 cut(s) 88, 122, 146, 468, 631, 1278
LguI GCTCTTC 1 cut(s) 521
LmnI GCTCC 5 cut(s) 174, 386, 448, 1326, 1650
LweI GCATC 2 cut(s) 679, 929
MaeI CTAG 3 cut(s) 452, 1340, 1460
MaeII ACGT 2 cut(s) 557, 1133
MaeIII GTNAC 2 cut(s) 246, 1379
MalI GATC 6 cut(s) 90, 124, 148, 470, 633, 1280
MbiI CCGCTC 2 cut(s) 718, 1321
MboI GATC 6 cut(s) 88, 122, 146, 468, 631, 1278
MboII GAAGA 7 cut(s) 156, 508, 813, 921, 1079, 1512, 1624
MflI RGATCY 2 cut(s) 122, 146
MhlI GDGCHC 1 cut(s) 179
MlyI GAGTC 5 cut(s) 1036, 1079, 1100, 1303, 1352
MmeI TCCRAC 5 cut(s) 645, 1084, 1233, 1451, 1619
Mph1103I ATGCAT 1 cut(s) 399
MseI TTAA 1 cut(s) 1530
MslI CAYNNNNRTG 2 cut(s) 439, 592
MspA1I CMGCKG 2 cut(s) 1377, 1551
MspI CCGG 5 cut(s) 126, 641, 771, 780, 852
MspR9I CCNGG 5 cut(s) 127, 461, 642, 852, 1005
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 2 cut(s) 461, 1005
MwoI GCNNNNNNNGC 5 cut(s) 112, 215, 235, 771, 864
NciI CCSGG 3 cut(s) 127, 642, 852
NdeII GATC 6 cut(s) 88, 122, 146, 468, 631, 1278
NlaIII CATG 7 cut(s) 397, 727, 967, 1018, 1067, 1249, 1688
NlaIV GGNNCC 4 cut(s) 124, 784, 1455, 1604
NmuCI GTSAC 1 cut(s) 1379
NsiI ATGCAT 1 cut(s) 399
NspI RCATGY 2 cut(s) 397, 1249
PaeI GCATGC 1 cut(s) 397
PagI TCATGA 1 cut(s) 963
PceI AGGCCT 2 cut(s) 464, 1008
PciSI GCTCTTC 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 560
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 4 cut(s) 50, 278, 539, 1423
PflMI CCANNNNNTGG 1 cut(s) 445
PleI GAGTC 5 cut(s) 1036, 1078, 1100, 1303, 1351
PpsI GAGTC 5 cut(s) 1036, 1078, 1100, 1303, 1351
PpuMI RGGWCCY 3 cut(s) 422, 1454, 1603
Psp124BI GAGCTC 1 cut(s) 179
Psp5II RGGWCCY 3 cut(s) 422, 1454, 1603
Psp6I CCWGG 2 cut(s) 459, 1003
PspFI CCCAGC 1 cut(s) 1551
PspGI CCWGG 2 cut(s) 459, 1003
PspN4I GGNNCC 4 cut(s) 124, 784, 1455, 1604
PspPI GGNCC 5 cut(s) 422, 579, 657, 1454, 1603
PspPPI RGGWCCY 3 cut(s) 422, 1454, 1603
PsrI GAACNNNNNNTAC 2 cut(s) 831, 863
PstI CTGCAG 3 cut(s) 355, 937, 1147
PstNI CAGNNNCTG 2 cut(s) 53, 250
PsuI RGATCY 2 cut(s) 122, 146
PvuII CAGCTG 1 cut(s) 1551
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 2 cut(s) 439, 592
SacI GAGCTC 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 521
SaqAI TTAA 1 cut(s) 1530
Sau3AI GATC 6 cut(s) 88, 122, 146, 468, 631, 1278
Sau96I GGNCC 5 cut(s) 422, 579, 657, 1454, 1603
SchI GAGTC 5 cut(s) 1036, 1079, 1100, 1303, 1352
ScrFI CCNGG 5 cut(s) 127, 461, 642, 852, 1005
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 2 cut(s) 679, 929
SfcI CTRYAG 4 cut(s) 351, 933, 1143, 1607
SfiI GGCCNNNNNGGCC 1 cut(s) 771
SinI GGWCC 4 cut(s) 422, 657, 1454, 1603
SmiMI CAYNNNNRTG 2 cut(s) 439, 592
SmlI CTYRAG 1 cut(s) 896
SmoI CTYRAG 1 cut(s) 896
SphI GCATGC 1 cut(s) 397
SseBI AGGCCT 2 cut(s) 464, 1008
SsiI CCGC 7 cut(s) 676, 718, 736, 858, 980, 1319, 1377
SspMI CTAG 3 cut(s) 452, 1340, 1460
SstI GAGCTC 1 cut(s) 179
StuI AGGCCT 2 cut(s) 464, 1008
StyD4I CCNGG 5 cut(s) 125, 459, 640, 850, 1003
StyI CCWWGG 1 cut(s) 1331
TaaI ACNGT 2 cut(s) 743, 1496
TaiI ACGT 2 cut(s) 560, 1136
TaqI TCGA 7 cut(s) 506, 554, 1022, 1185, 1242, 1277, 1634
TaqII GACCGA 1 cut(s) 674
TauI GCSGC 2 cut(s) 721, 738
TfiI GAWTC 4 cut(s) 50, 278, 539, 1423
Tru1I TTAA 1 cut(s) 1530
Tru9I TTAA 1 cut(s) 1530
TscAI CASTG 5 cut(s) 490, 634, 1396, 1501, 1648
TseFI GTSAC 1 cut(s) 1379
Tsp45I GTSAC 1 cut(s) 1379
TspDTI ATGAA 9 cut(s) 66, 308, 576, 740, 952, 980, 1080, 1171, 1701
TspGWI ACGGA 4 cut(s) 135, 582, 826, 835
TspRI CASTG 5 cut(s) 490, 634, 1396, 1501, 1648
Van91I CCANNNNNTGG 1 cut(s) 445
VpaK11BI GGWCC 4 cut(s) 422, 657, 1454, 1603
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 4 cut(s) 508, 615, 990, 1153
XceI RCATGY 2 cut(s) 397, 1249
XspI CTAG 3 cut(s) 452, 1340, 1460
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.