Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001679

Physical Location & Seq

Genomic Coordinates Forward (+)

72404882 .. 72408048

Gene Structure 3167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGGATTTTGGGGTGGTGGGTGGTATGGACATGGATTGCTTGATGGGTCCTGAACCCGGAGAAGGAGCAACAGCTCATTCTCATGTCTCAGGACCCGAGACCAAACCGGGTCATGGATCTGGGTTGTCTTTCAAGCAACAGAGATCATGGCCTGTTGAGGATGACTGGAGGGTCTCCAAAATCTCCCAACCCGACGACATGTCGTCTCCCAGGACAATGCCATTGCCTCAGGGGCCTCCTTCTCAGCTCCTGATGAGATCTAGTTCTCTGGCTCCTCCCAGACAAGAGCAAATGCTGAGCTTTGCCTCCAATAAATCAGAGGTCACTTTTCTGAGCAAAGATGGAGGAGCAAGCTCAGATTTTGCATACTACCAGCGCATGCCTACTCCCTCTTCTCCCTATGCTAGAAATGCAGGTTATGGGTCTGGAAGCTTGAATGCAAACATGCATGGGCTTTATGCAGCGGCTAAAGGACCATTTACTCCTTCACAGTGGATTGAGCTAGAGCACCAGGCCTTGATCTACAAGTACCTGAATGCAAATGCGCCTGTGCCATCCAATTTGCTCATTCCTCTCAAGAAGGCCCTCTACCCTTATGGCTTGTCTGGTGCCTCTCCCAACTCATTAGGTTGGGGGTCTTTCCATCTGGGATATTCCGGCAATGCTGATCCTGAACCTGGGAGGTGTCGTCGAACGGATGGGAAGAAGTGGCGGTGCTCAAGAGATGCTGTAGCAGACCAGAAGTACTGCGAGAGGCACATTAACAGGGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAGACAGGCCATGGTGCCTCTAGGAGAGCAAATTCAAAGGAAGTGGCGCCTCCAGTAACCTCATCAATGCCAACGTCGGTCAGTGGTGCATCCCAGCCGCAGTTCAAAAGCTTGGAGCCTCCTCCTGCTGATGCTGCCGCCACCAATTCTTCTGTTGATGCCTTTGCCAACAGAATGCAAGATCCACAGGGTCTCTCCGTGATGTCTGCTTCTAGCATCAAGCCTGAATCTAATGCTTCGAGTTTTAACATCCCGAAACGAGATTTCCCTATGGAAGAATCGTCGCAATCAGAGTTTGGTCTTGTTTCTACTGATTCACTTCTCAACCCTTCACATAGGGGCTCTTACATTCCCAAAGATTTTGGTGGTTCTTTCCTTGATTTCACTGATCAGGAAACACAAGACCAAAATCTGCTTCACCAGTTCATCGATGATTGGCCCAAGGACCAGTCCAGTCAATCAGTTGTTACTTGGCCTGAGGATTTAAAATCAGACTGGACTCAGCTCTCAATGGCAATCCCTATGGCGTCAGACTTCTCCTCATCCTCATCCTCACCCACACAAGACAAGCTAGGACTCTCACCGCTGAGGCTCTCTCGGGAAGTCCTGACCAACACCAGTAGCTGTGTGAACTCCAAGAACTCATCATCGTCGAACACATCACCTATTAACCTCTTGAACGAAGGCTGGGATGGCAGCAGCCAGTTAGAGTCTTCCCCAACCGGTGTCCTGCAAAAGTCAACATTCTGTTCACTTTCAAACAGTAGCTCAGGGAGCAGCCCAAGAGCTGATAACAAGAAGAGTCGGGATGGGGCAAGCCGATATGATGATGTACTCGGTTCGACTTTAGCAAGCTCCTCAGTTCCCTCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

558

Amino Acids

60.07

Weight (kDa)

6.28

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	159 - 192	1.4e-14	QLQ
WRC	PF08879	224 - 266	1e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22840 AT4G37740
fragaria_vesca	FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671
malus_domestica	MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1
prunus_persica	Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1
pyrus_communis	pycom02g15360 pycom08g06450 pycom15g26320
rosa_chinensis	RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051
rosa_laevigata	RLG00000010515 RLG00000010516 RLG00000017688
rosa_multiflora	Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012
rosa_roxburghii	Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200
rosa_samantha	Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100
rosa_wichuraiana	Rw2G016360 Rw6G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	404
AccB1I	GGYRCC	3 cut(s)	608, 815, 847
AciI	CCGC	6 cut(s)	464, 712, 772, 899, 939, 1385
AclWI	GGATC	3 cut(s)	124, 662, 977
AcsI	RAATTY	1 cut(s)	832
AcyI	GRCGYC	2 cut(s)	848, 1328
AfaI	GTAC	3 cut(s)	530, 746, 1635
AfiI	CCNNNNNNNGG	5 cut(s)	56, 62, 113, 677, 797
AflIII	ACRYGT	1 cut(s)	198
AgeI	ACCGGT	1 cut(s)	1523
AgsI	TTSAA	7 cut(s)	133, 436, 783, 837, 907, 1480, 1560
AhdI	GACNNNNNGTC	2 cut(s)	199, 202
AjnI	CCWGG	3 cut(s)	209, 510, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	1200, 1232
Alw21I	GWGCWC	2 cut(s)	510, 719
Alw26I	GTCTC	5 cut(s)	91, 92, 178, 210, 998
AlwI	GGATC	3 cut(s)	124, 662, 977
AlwNI	CAGNNNCTG	2 cut(s)	250, 1425
Ama87I	CYCGRG	2 cut(s)	95, 1398
AoxI	GGCC	9 cut(s)	149, 233, 513, 582, 769, 799, 808, 1238, 1274
ApeKI	GCWGC	5 cut(s)	461, 935, 1497, 1500, 1578
ApoI	RAATTY	1 cut(s)	832
AsiGI	ACCGGT	1 cut(s)	1523
AspLEI	GCGC	3 cut(s)	378, 547, 850
AspS9I	GGNCC	8 cut(s)	47, 92, 233, 473, 583, 769, 1239, 1246
AsuC2I	CCSGG	2 cut(s)	57, 108
AsuHPI	GGTGA	4 cut(s)	1211, 1347, 1374, 1455
AvaI	CYCGRG	2 cut(s)	95, 1398
AvaII	GGWCC	4 cut(s)	47, 92, 473, 1246
AxyI	CCTNAGG	2 cut(s)	228, 1278
BanI	GGYRCC	3 cut(s)	608, 815, 847
BanII	GRGCYC	1 cut(s)	1145
BarI	GAAGNNNNNNTAC	2 cut(s)	572, 604
BbsI	GAAGAC	1 cut(s)	1506
Bbv12I	GWGCWC	2 cut(s)	510, 719
BbvCI	CCTCAGC	1 cut(s)	1388
BbvI	GCAGC	5 cut(s)	473, 922, 1509, 1512, 1590
BccI	CCATC	8 cut(s)	37, 335, 562, 651, 692, 783, 1487, 1604
BciT130I	CCWGG	3 cut(s)	211, 512, 678
BclI	TGATCA	1 cut(s)	1189
BcnI	CCSGG	2 cut(s)	57, 108
BcoDI	GTCTC	5 cut(s)	91, 92, 178, 210, 998
BfaI	CTAG	6 cut(s)	261, 405, 503, 822, 1014, 1373
BfmI	CTRYAG	1 cut(s)	729
BfoI	RGCGCY	1 cut(s)	851
BfuAI	ACCTGC	1 cut(s)	404
BglI	GCCNNNNNGGC	2 cut(s)	232, 807
BglII	AGATCT	1 cut(s)	257
BisI	GCNGC	9 cut(s)	462, 465, 772, 899, 936, 939, 1498, 1501, 1579
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	9 cut(s)	463, 466, 773, 900, 937, 940, 1499, 1502, 1580
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	5 cut(s)	57, 108, 211, 512, 678
Bme18I	GGWCC	4 cut(s)	47, 92, 473, 1246
BmeRI	GACNNNNNGTC	2 cut(s)	199, 202
BmeT110I	CYCGRG	2 cut(s)	95, 1398
BmgT120I	GGNCC	8 cut(s)	47, 92, 233, 473, 583, 769, 1239, 1246
BmiI	GGNNCC	9 cut(s)	48, 94, 234, 273, 610, 770, 817, 849, 918
BmrFI	CCNGG	5 cut(s)	57, 108, 211, 512, 678
BmsI	GCATC	5 cut(s)	715, 899, 922, 949, 1026
BpiI	GAAGAC	1 cut(s)	1506
BplI	GAGNNNNNCTC	2 cut(s)	1381, 1413
BpmI	CTGGAG	2 cut(s)	187, 837
Bpu10I	CCTNAGC	2 cut(s)	1388, 1570
Bpu1102I	GCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	2 cut(s)	560, 703
BpuMI	CCSGG	2 cut(s)	57, 108
Bsa29I	ATCGAT	1 cut(s)	1230
BsaHI	GRCGYC	2 cut(s)	848, 1328
BsaI	GGTCTC	3 cut(s)	92, 178, 998
BsaJI	CCNNGG	4 cut(s)	209, 677, 811, 1242
BsaWI	WCCGGW	1 cut(s)	1523
BsaXI	ACNNNNNCTCC	2 cut(s)	673, 703
Bsc4I	CCNNNNNNNGG	5 cut(s)	56, 62, 113, 677, 797
Bse118I	RCCGGY	1 cut(s)	1523
Bse1I	ACTGG	8 cut(s)	170, 854, 1222, 1249, 1254, 1301, 1419, 1504
Bse21I	CCTNAGG	2 cut(s)	228, 1278
Bse3DI	GCAATG	2 cut(s)	221, 667
BseBI	CCWGG	3 cut(s)	211, 512, 678
BseCI	ATCGAT	1 cut(s)	1230
BseDI	CCNNGG	4 cut(s)	209, 677, 811, 1242
BseGI	GGATG	9 cut(s)	166, 554, 703, 890, 1050, 1343, 1349, 1498, 1615
BseLI	CCNNNNNNNGG	5 cut(s)	56, 62, 113, 677, 797
BseMI	GCAATG	2 cut(s)	221, 667
BseNI	ACTGG	8 cut(s)	170, 854, 1222, 1249, 1254, 1301, 1419, 1504
BseRI	GAGGAG	5 cut(s)	264, 360, 912, 1330, 1648
BseXI	GCAGC	5 cut(s)	473, 922, 1509, 1512, 1590
BseYI	CCCAGC	2 cut(s)	894, 1488
BshFI	GGCC	9 cut(s)	151, 235, 515, 584, 771, 801, 810, 1240, 1276
BshNI	GGYRCC	3 cut(s)	608, 815, 847
BshTI	ACCGGT	1 cut(s)	1523
BshVI	ATCGAT	1 cut(s)	1230
BsiHKAI	GWGCWC	2 cut(s)	510, 719
BsiHKCI	CYCGRG	2 cut(s)	95, 1398
BsiSI	CCGG	4 cut(s)	57, 107, 657, 1524
BslI	CCNNNNNNNGG	5 cut(s)	56, 62, 113, 677, 797
BsmAI	GTCTC	5 cut(s)	91, 92, 178, 210, 998
BsmBI	CGTCTC	1 cut(s)	210
BsmI	GAATGC	3 cut(s)	442, 541, 981
BsnI	GGCC	9 cut(s)	151, 235, 515, 584, 771, 801, 810, 1240, 1276
Bso31I	GGTCTC	3 cut(s)	92, 178, 998
BsoBI	CYCGRG	2 cut(s)	95, 1398
Bsp1286I	GDGCHC	3 cut(s)	510, 719, 1145
Bsp143I	GATC	7 cut(s)	116, 143, 257, 519, 667, 982, 1189
Bsp1720I	GCTNAGC	1 cut(s)	296
Bsp19I	CCATGG	1 cut(s)	811
BspACI	CCGC	6 cut(s)	464, 712, 772, 899, 939, 1385
BspANI	GGCC	9 cut(s)	151, 235, 515, 584, 771, 801, 810, 1240, 1276
BspDI	ATCGAT	1 cut(s)	1230
BspLI	GGNNCC	9 cut(s)	48, 94, 234, 273, 610, 770, 817, 849, 918
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	3 cut(s)	124, 662, 977
BspT107I	GGYRCC	3 cut(s)	608, 815, 847
BspTNI	GGTCTC	3 cut(s)	92, 178, 998
BsrDI	GCAATG	2 cut(s)	221, 667
BsrFI	RCCGGY	1 cut(s)	1523
BsrI	ACTGG	8 cut(s)	170, 854, 1222, 1249, 1254, 1301, 1419, 1504
BssAI	RCCGGY	1 cut(s)	1523
BssECI	CCNNGG	4 cut(s)	209, 677, 811, 1242
BssMI	GATC	7 cut(s)	116, 143, 257, 519, 667, 982, 1189
BssNI	GRCGYC	2 cut(s)	848, 1328
BssT1I	CCWWGG	2 cut(s)	811, 1242
Bst2UI	CCWGG	3 cut(s)	211, 512, 678
Bst4CI	ACNGT	2 cut(s)	492, 1565
Bst6I	CTCTTC	2 cut(s)	397, 1595
BstACI	GRCGYC	2 cut(s)	848, 1328
BstC8I	GCNNGC	4 cut(s)	352, 380, 1618, 1654
BstDSI	CCRYGG	1 cut(s)	811
BstENI	CCTNNNNNAGG	1 cut(s)	795
BstF5I	GGATG	9 cut(s)	166, 554, 703, 890, 1050, 1343, 1349, 1498, 1615
BstH2I	RGCGCY	1 cut(s)	851
BstHHI	GCGC	3 cut(s)	378, 547, 850
BstKTI	GATC	7 cut(s)	119, 146, 260, 522, 670, 985, 1192
BstMAI	GTCTC	5 cut(s)	91, 92, 178, 210, 998
BstMBI	GATC	7 cut(s)	116, 143, 257, 519, 667, 982, 1189
BstMWI	GCNNNNNNNGC	6 cut(s)	232, 410, 807, 935, 1494, 1575
BstNI	CCWGG	3 cut(s)	211, 512, 678
BstNSI	RCATGY	3 cut(s)	202, 382, 448
BstSCI	CCNGG	5 cut(s)	55, 106, 209, 510, 676
BstSFI	CTRYAG	1 cut(s)	729
BstV1I	GCAGC	5 cut(s)	473, 922, 1509, 1512, 1590
BstV2I	GAAGAC	1 cut(s)	1506
BstX2I	RGATCY	3 cut(s)	116, 257, 982
BstYI	RGATCY	3 cut(s)	116, 257, 982
Bsu15I	ATCGAT	1 cut(s)	1230
Bsu36I	CCTNAGG	2 cut(s)	228, 1278
BsuRI	GGCC	9 cut(s)	151, 235, 515, 584, 771, 801, 810, 1240, 1276
BsuTUI	ATCGAT	1 cut(s)	1230
BtgI	CCRYGG	1 cut(s)	811
BtsCI	GGATG	9 cut(s)	166, 554, 703, 890, 1050, 1343, 1349, 1498, 1615
BtsIMutI	CAGTG	3 cut(s)	497, 889, 1185
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	4 cut(s)	352, 380, 1618, 1654
CaiI	CAGNNNCTG	2 cut(s)	250, 1425
CfoI	GCGC	3 cut(s)	378, 547, 850
Cfr10I	RCCGGY	1 cut(s)	1523
Cfr13I	GGNCC	8 cut(s)	47, 92, 233, 473, 583, 769, 1239, 1246
ClaI	ATCGAT	1 cut(s)	1230
CseI	GACGC	1 cut(s)	1317
Csp6I	GTAC	3 cut(s)	529, 745, 1634
CspAI	ACCGGT	1 cut(s)	1523
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviAII	CATG	9 cut(s)	31, 83, 113, 147, 199, 379, 445, 449, 812
CviQI	GTAC	3 cut(s)	529, 745, 1634
DinI	GGCGCC	1 cut(s)	849
DpnI	GATC	7 cut(s)	118, 145, 259, 521, 669, 984, 1191
DpnII	GATC	7 cut(s)	116, 143, 257, 519, 667, 982, 1189
DraI	TTTAAA	1 cut(s)	1287
DrdI	GACNNNNNNGTC	1 cut(s)	170
DriI	GACNNNNNGTC	2 cut(s)	199, 202
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	2 cut(s)	397, 1595
Eam1105I	GACNNNNNGTC	2 cut(s)	199, 202
EarI	CTCTTC	2 cut(s)	397, 1595
Eco130I	CCWWGG	2 cut(s)	811, 1242
Eco147I	AGGCCT	1 cut(s)	515
Eco24I	GRGCYC	1 cut(s)	1145
Eco31I	GGTCTC	3 cut(s)	92, 178, 998
Eco47I	GGWCC	4 cut(s)	47, 92, 473, 1246
Eco81I	CCTNAGG	2 cut(s)	228, 1278
Eco88I	CYCGRG	2 cut(s)	95, 1398
EcoNI	CCTNNNNNAGG	1 cut(s)	795
EcoO109I	RGGNCCY	4 cut(s)	47, 92, 233, 583
EcoRII	CCWGG	3 cut(s)	209, 510, 676
EcoT14I	CCWWGG	2 cut(s)	811, 1242
EcoT22I	ATGCAT	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	1145
EgeI	GGCGCC	1 cut(s)	849
EheI	GGCGCC	1 cut(s)	849
ErhI	CCWWGG	2 cut(s)	811, 1242
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	9 cut(s)	34, 86, 116, 150, 202, 382, 448, 452, 815
FatI	CATG	9 cut(s)	30, 82, 112, 146, 198, 378, 444, 448, 811
FbaI	TGATCA	1 cut(s)	1189
Fnu4HI	GCNGC	9 cut(s)	462, 465, 772, 899, 936, 939, 1498, 1501, 1579
FokI	GGATG	9 cut(s)	173, 541, 710, 877, 1037, 1330, 1336, 1505, 1622
FriOI	GRGCYC	1 cut(s)	1145
Fsp4HI	GCNGC	9 cut(s)	462, 465, 772, 899, 936, 939, 1498, 1501, 1579
FspBI	CTAG	6 cut(s)	261, 405, 503, 822, 1014, 1373
GlaI	GCGC	3 cut(s)	377, 546, 849
GluI	GCNGC	9 cut(s)	462, 465, 772, 899, 936, 939, 1498, 1501, 1579
GsaI	CCCAGC	2 cut(s)	898, 1492
GsuI	CTGGAG	2 cut(s)	187, 837
HaeII	RGCGCY	1 cut(s)	851
HaeIII	GGCC	9 cut(s)	151, 235, 515, 584, 771, 801, 810, 1240, 1276
HapII	CCGG	4 cut(s)	57, 107, 657, 1524
HgaI	GACGC	1 cut(s)	1317
HhaI	GCGC	3 cut(s)	378, 547, 850
Hin1I	GRCGYC	2 cut(s)	848, 1328
Hin1II	CATG	9 cut(s)	34, 86, 116, 150, 202, 382, 448, 452, 815
Hin6I	GCGC	3 cut(s)	376, 545, 848
HinP1I	GCGC	3 cut(s)	376, 545, 848
HincII	GTYRAC	1 cut(s)	1542
HindII	GTYRAC	1 cut(s)	1542
HindIII	AAGCTT	2 cut(s)	430, 910
HinfI	GANTC	7 cut(s)	1028, 1079, 1115, 1300, 1377, 1511, 1603
HpaII	CCGG	4 cut(s)	57, 107, 657, 1524
HphI	GGTGA	4 cut(s)	1211, 1347, 1374, 1455
Hpy166II	GTNNAC	3 cut(s)	1432, 1542, 1553
Hpy188I	TCNGA	6 cut(s)	319, 333, 358, 1093, 1294, 1333
Hpy8I	GTNNAC	3 cut(s)	1432, 1542, 1553
Hpy99I	CGWCG	5 cut(s)	197, 693, 880, 1087, 1456
HpyAV	CCTTC	7 cut(s)	56, 249, 495, 574, 791, 1140, 1478
HpyCH4III	ACNGT	2 cut(s)	492, 1565
HpyCH4IV	ACGT	1 cut(s)	875
HpyCH4V	TGCA	9 cut(s)	365, 413, 440, 448, 461, 539, 890, 979, 1534
HpyF10VI	GCNNNNNNNGC	6 cut(s)	232, 410, 807, 935, 1494, 1575
HpySE526I	ACGT	1 cut(s)	875
Hsp92I	GRCGYC	2 cut(s)	848, 1328
Hsp92II	CATG	9 cut(s)	34, 86, 116, 150, 202, 382, 448, 452, 815
HspAI	GCGC	3 cut(s)	376, 545, 848
KasI	GGCGCC	1 cut(s)	847
Ksp22I	TGATCA	1 cut(s)	1189
Kzo9I	GATC	7 cut(s)	116, 143, 257, 519, 667, 982, 1189
LmnI	GCTCC	7 cut(s)	65, 252, 277, 347, 916, 1575, 1661
Lsp1109I	GCAGC	5 cut(s)	473, 922, 1509, 1512, 1590
LweI	GCATC	5 cut(s)	715, 899, 922, 949, 1026
MaeI	CTAG	6 cut(s)	261, 405, 503, 822, 1014, 1373
MaeII	ACGT	1 cut(s)	875
MaeIII	GTNAC	3 cut(s)	322, 856, 1267
MalI	GATC	7 cut(s)	118, 145, 259, 521, 669, 984, 1191
MboI	GATC	7 cut(s)	116, 143, 257, 519, 667, 982, 1189
MboII	GAAGA	6 cut(s)	384, 715, 942, 1088, 1506, 1612
MflI	RGATCY	3 cut(s)	116, 257, 982
MhlI	GDGCHC	3 cut(s)	510, 719, 1145
MluCI	AATT	3 cut(s)	559, 832, 946
Mly113I	GGCGCC	1 cut(s)	848
MlyI	GAGTC	4 cut(s)	1294, 1371, 1520, 1612
Mph1103I	ATGCAT	1 cut(s)	450
MseI	TTAA	4 cut(s)	762, 1047, 1286, 1470
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	464, 1387
MspI	CCGG	4 cut(s)	57, 107, 657, 1524
MspR9I	CCNGG	5 cut(s)	57, 108, 211, 512, 678
Mva1269I	GAATGC	3 cut(s)	442, 541, 981
MvaI	CCWGG	3 cut(s)	211, 512, 678
MwoI	GCNNNNNNNGC	6 cut(s)	232, 410, 807, 935, 1494, 1575
NarI	GGCGCC	1 cut(s)	848
NciI	CCSGG	2 cut(s)	57, 108
NcoI	CCATGG	1 cut(s)	811
NdeII	GATC	7 cut(s)	116, 143, 257, 519, 667, 982, 1189
NlaIII	CATG	9 cut(s)	34, 86, 116, 150, 202, 382, 448, 452, 815
NlaIV	GGNNCC	9 cut(s)	48, 94, 234, 273, 610, 770, 817, 849, 918
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	450
NspI	RCATGY	3 cut(s)	202, 382, 448
PaeI	GCATGC	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	515
PciI	ACATGT	1 cut(s)	198
PctI	GAATGC	3 cut(s)	442, 541, 981
PfeI	GAWTC	3 cut(s)	1028, 1079, 1115
PinAI	ACCGGT	1 cut(s)	1523
PkrI	GCNGC	9 cut(s)	463, 466, 773, 900, 937, 940, 1499, 1502, 1580
PleI	GAGTC	4 cut(s)	1294, 1371, 1519, 1611
PluTI	GGCGCC	1 cut(s)	851
PpsI	GAGTC	4 cut(s)	1294, 1371, 1519, 1611
PpuMI	RGGWCCY	2 cut(s)	47, 92
PscI	ACATGT	1 cut(s)	198
Psp5II	RGGWCCY	2 cut(s)	47, 92
Psp6I	CCWGG	3 cut(s)	209, 510, 676
PspFI	CCCAGC	2 cut(s)	894, 1488
PspGI	CCWGG	3 cut(s)	209, 510, 676
PspN4I	GGNNCC	9 cut(s)	48, 94, 234, 273, 610, 770, 817, 849, 918
PspPI	GGNCC	8 cut(s)	47, 92, 233, 473, 583, 769, 1239, 1246
PspPPI	RGGWCCY	2 cut(s)	47, 92
PstNI	CAGNNNCTG	2 cut(s)	250, 1425
PsuI	RGATCY	3 cut(s)	116, 257, 982
RsaI	GTAC	3 cut(s)	530, 746, 1635
RsaNI	GTAC	3 cut(s)	529, 745, 1634
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	762, 1047, 1286, 1470
SatI	GCNGC	9 cut(s)	462, 465, 772, 899, 936, 939, 1498, 1501, 1579
Sau3AI	GATC	7 cut(s)	116, 143, 257, 519, 667, 982, 1189
Sau96I	GGNCC	8 cut(s)	47, 92, 233, 473, 583, 769, 1239, 1246
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	4 cut(s)	1294, 1371, 1520, 1612
ScrFI	CCNGG	5 cut(s)	57, 108, 211, 512, 678
SduI	GDGCHC	3 cut(s)	510, 719, 1145
SfaNI	GCATC	5 cut(s)	715, 899, 922, 949, 1026
SfcI	CTRYAG	1 cut(s)	729
SfiI	GGCCNNNNNGGCC	1 cut(s)	807
SfoI	GGCGCC	1 cut(s)	849
SinI	GGWCC	4 cut(s)	47, 92, 473, 1246
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	575, 718
SmoI	CTYRAG	2 cut(s)	575, 718
SphI	GCATGC	1 cut(s)	382
Sse9I	AATT	3 cut(s)	559, 832, 946
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	6 cut(s)	464, 712, 772, 899, 939, 1385
SspDI	GGCGCC	1 cut(s)	847
SspMI	CTAG	6 cut(s)	261, 405, 503, 822, 1014, 1373
StuI	AGGCCT	1 cut(s)	515
StyD4I	CCNGG	5 cut(s)	55, 106, 209, 510, 676
StyI	CCWWGG	2 cut(s)	811, 1242
TaaI	ACNGT	2 cut(s)	492, 1565
TaiI	ACGT	1 cut(s)	878
TaqI	TCGA	5 cut(s)	691, 1040, 1230, 1454, 1643
TaqII	GACCGA	1 cut(s)	868
TasI	AATT	3 cut(s)	559, 832, 946
TatI	WGTACW	2 cut(s)	744, 1633
TauI	GCSGC	4 cut(s)	467, 774, 901, 941
TfiI	GAWTC	3 cut(s)	1028, 1079, 1115
Tru1I	TTAA	4 cut(s)	762, 1047, 1286, 1470
Tru9I	TTAA	4 cut(s)	762, 1047, 1286, 1470
TscAI	CASTG	3 cut(s)	497, 889, 1192
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	5 cut(s)	461, 935, 1497, 1500, 1578
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	1216
TspGWI	ACGGA	2 cut(s)	710, 988
TspRI	CASTG	3 cut(s)	497, 889, 1192
VpaK11BI	GGWCC	4 cut(s)	47, 92, 473, 1246
XagI	CCTNNNNNAGG	1 cut(s)	795
XapI	RAATTY	1 cut(s)	832
XceI	RCATGY	3 cut(s)	202, 382, 448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	809
XspI	CTAG	6 cut(s)	261, 405, 503, 822, 1014, 1373
ZrmI	AGTACT	1 cut(s)	746
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.