Prupe.1G419200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001679
Physical Location & Seq
Forward (+)
36309480 .. 36309974
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G419200.1

Sequence Viewer

Length: 495 bp
ATGCACCGGAGAAGATCAAGTGACAGCGAGGCTGTTATGCCACGGCCATCTCGGGCTAGTATACCCTTTTCTTGGGAGAATGAGCCCGGGATGTCTAAGGTTGTAACGGTTGTACATGATCATCGCGATCATAAAGTACTATCAGAGCATTTGAACATGGAGCACTTAACGTTGAAGCTGAGGCCGCCTCCTTGTCTATCGACATCCCCAGGTAGGAGTGCTAGGTTTATGGTGGTTGATCGGCAAACCCGTCTTCCTCTGTGTTCTATTCAGCCTTCGCTTAGGTTAAACTCGTTCAGATTGTTAGGTGGCGGTGTTAAAAAGGAAGAAGACCCATTTTTGTCTGCTTTGATGAAATGCAGAGCCAAGAACCCTAATAGTCCAGCTCAGAATTATGGTGAGAAGAAAGTTAAGACCATGTTTAGTTTCTCATGCAAGTATTCTTGTGGTGTTAGGGAGGATAGTATAATTAAAATGCCTCAGTCTCCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.6

Weight (kDa)

9.98

Isoelectric Point (pI)

76.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 61
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 185, 312
AclI AACGTT 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 44
AfaI GTAC 2 cut(s) 114, 138
AfiI CCNNNNNNNGG 2 cut(s) 72, 213
AgsI TTSAA 2 cut(s) 154, 175
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 178, 386
AluI AGCT 2 cut(s) 178, 386
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 489
Ama87I CYCGRG 2 cut(s) 51, 86
AoxI GGCC 2 cut(s) 44, 182
AsuC2I CCSGG 2 cut(s) 87, 88
AsuHPI GGTGA 1 cut(s) 410
AvaI CYCGRG 2 cut(s) 51, 86
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 2 cut(s) 245, 336
Bbv12I GWGCWC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 2 cut(s) 87, 88
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 2 cut(s) 57, 222
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 138
Bme1390I CCNGG 3 cut(s) 87, 88, 210
BmeT110I CYCGRG 2 cut(s) 51, 86
BmrFI CCNGG 3 cut(s) 87, 88, 210
BpiI GAAGAC 2 cut(s) 245, 336
BplI GAGNNNNNCTC 2 cut(s) 172, 204
Bpu10I CCTNAGC 2 cut(s) 179, 281
BpuMI CCSGG 2 cut(s) 87, 88
BsaJI CCNNGG 3 cut(s) 41, 86, 208
BsaWI WCCGGW 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 213
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 41, 86, 208
BseGI GGATG 2 cut(s) 96, 203
BseLI CCNNNNNNNGG 2 cut(s) 72, 213
BseMII CTCAG 3 cut(s) 170, 401, 494
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 2 cut(s) 46, 184
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 2 cut(s) 51, 86
BsiSI CCGG 2 cut(s) 7, 87
BslI CCNNNNNNNGG 2 cut(s) 72, 213
BsmAI GTCTC 1 cut(s) 489
BsnI GGCC 2 cut(s) 46, 184
BsoBI CYCGRG 2 cut(s) 51, 86
Bsp1286I GDGCHC 2 cut(s) 87, 165
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 4 cut(s) 14, 118, 127, 238
Bsp68I TCGCGA 1 cut(s) 126
BspACI CCGC 2 cut(s) 185, 312
BspANI GGCC 2 cut(s) 46, 184
BspCNI CTCAG 3 cut(s) 171, 400, 493
BspFNI CGCG 1 cut(s) 126
BsrGI TGTACA 1 cut(s) 112
BssECI CCNNGG 3 cut(s) 41, 86, 208
BssMI GATC 4 cut(s) 14, 118, 127, 238
BssNAI GTATAC 1 cut(s) 62
Bst1107I GTATAC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 112
BstDEI CTNAG 5 cut(s) 96, 179, 281, 387, 480
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 2 cut(s) 96, 203
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 4 cut(s) 17, 121, 130, 241
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 4 cut(s) 14, 118, 127, 238
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 3 cut(s) 85, 86, 208
BstUI CGCG 1 cut(s) 126
BstV2I GAAGAC 2 cut(s) 245, 336
BstZ17I GTATAC 1 cut(s) 62
BsuRI GGCC 2 cut(s) 46, 184
BtgI CCRYGG 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 2 cut(s) 96, 203
BtuMI TCGCGA 1 cut(s) 126
Cfr9I CCCGGG 1 cut(s) 86
Csp6I GTAC 2 cut(s) 113, 137
CviAII CATG 4 cut(s) 116, 157, 418, 432
CviJI RGCY 9 cut(s) 32, 46, 56, 85, 178, 184, 274, 365, 386
CviKI_1 RGCY 9 cut(s) 32, 46, 56, 85, 178, 184, 274, 365, 386
CviQI GTAC 2 cut(s) 113, 137
DdeI CTNAG 5 cut(s) 96, 179, 281, 387, 480
DpnI GATC 4 cut(s) 16, 120, 129, 240
DpnII GATC 4 cut(s) 14, 118, 127, 238
EaeI YGGCCR 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 87
Eco88I CYCGRG 2 cut(s) 51, 86
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 4 cut(s) 119, 160, 421, 435
FatI CATG 4 cut(s) 115, 156, 417, 431
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 103, 190
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 2 cut(s) 57, 222
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 46, 184
HapII CCGG 2 cut(s) 7, 87
Hin1II CATG 4 cut(s) 119, 160, 421, 435
HpaII CCGG 2 cut(s) 7, 87
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 3 cut(s) 145, 299, 390
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 3 cut(s) 4, 360, 435
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 5 cut(s) 96, 179, 281, 387, 480
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 4 cut(s) 119, 160, 421, 435
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 14, 118, 127, 238
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 20, 100, 195, 222, 396
MaeI CTAG 2 cut(s) 57, 222
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 20, 103
MalI GATC 4 cut(s) 16, 120, 129, 240
MboI GATC 4 cut(s) 14, 118, 127, 238
MboII GAAGA 5 cut(s) 24, 245, 338, 341, 415
MhlI GDGCHC 2 cut(s) 87, 165
MluCI AATT 2 cut(s) 391, 468
MnlI CCTC 6 cut(s) 22, 174, 198, 267, 451, 489
MseI TTAA 5 cut(s) 167, 287, 318, 411, 471
MspI CCGG 2 cut(s) 7, 87
MspR9I CCNGG 3 cut(s) 87, 88, 210
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 184
NciI CCSGG 2 cut(s) 87, 88
NdeII GATC 4 cut(s) 14, 118, 127, 238
NlaIII CATG 4 cut(s) 119, 160, 421, 435
NmuCI GTSAC 1 cut(s) 20
NruI TCGCGA 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PkrI GCNGC 1 cut(s) 186
Psp1406I AACGTT 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
RruI TCGCGA 1 cut(s) 126
RsaI GTAC 2 cut(s) 114, 138
RsaNI GTAC 2 cut(s) 113, 137
SaqAI TTAA 5 cut(s) 167, 287, 318, 411, 471
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 4 cut(s) 14, 118, 127, 238
ScaI AGTACT 1 cut(s) 138
ScrFI CCNGG 3 cut(s) 87, 88, 210
SduI GDGCHC 2 cut(s) 87, 165
SetI ASST 8 cut(s) 102, 173, 180, 214, 227, 287, 310, 388
SmaI CCCGGG 1 cut(s) 88
Sse9I AATT 2 cut(s) 391, 468
SsiI CCGC 2 cut(s) 185, 312
SspMI CTAG 2 cut(s) 57, 222
StyD4I CCNGG 3 cut(s) 85, 86, 208
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 200
TasI AATT 2 cut(s) 391, 468
TatI WGTACW 2 cut(s) 112, 136
TauI GCSGC 1 cut(s) 187
Tru1I TTAA 5 cut(s) 167, 287, 318, 411, 471
Tru9I TTAA 5 cut(s) 167, 287, 318, 411, 471
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 368
TspMI CCCGGG 1 cut(s) 86
XmaI CCCGGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 2 cut(s) 57, 222
ZrmI AGTACT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.