Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001679

Physical Location & Seq

Genomic Coordinates Reverse (-)

67435560 .. 67436262

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27880

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCAACGTCGTTTCGGGCAAATGTACCGTTCTCGTGGGAGAAGAAGCCCGGGACGTCCAAGCTCAAACCATCTGATTCTTCCGATCGTCGTAGTTTGGATCACTACTTCACGACCACGACGTCGTCCCTAAAGCTGATACCTCCTCCAGCTCGTCTCTCATCGCAAATTTCCATCAGTAGTACTGCTGGTAACCGGCAGACCCGTGGCGGCCCTTGTCTATGCTCCAGTGTTGATGTTCAGCCATCTGTTGCTACGTTTCGAAACCCATTCGGATTAACGGGTGATGCTAGTCCTACTACTGCTAAAAATAATCGTCTTCAAGAAGACCCATTTCTTGCAGCTTTCATCAAATGCACCCAGATGCACGGCTCCAGAGTCACTAATAGTGGCAAAAGCTATGCAGCTGATAGTAGACATTATGCAGCAGCTAGGTTTTCTGCCGGGAAGAAAACCACCCTGTTCTCGATGTTTACTAGTAGTTTCTCATGTAAGTACTCCTCCGCTGTTAGGGACGACAATATTGTAGTTGCAAGGCCACGCAAATCCCCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.13

Weight (kDa)

10.33

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22840 AT4G37740
fragaria_vesca	FvH4_1g18220 FvH4_2g32670 FvH4_2g32670 FvH4_2g32670 FvH4_2g32671
malus_domestica	MD02G1189500.v1.1 MD04G1215900.v1.1 MD15G1065000.v1.1 MD15G1300900.v1.1
prunus_persica	Prupe.1G419000_v2.0.a1 Prupe.1G419000_v2.0.a1 Prupe.1G419200_v2.0.a1 Prupe.6G217000_v2.0.a1
pyrus_communis	pycom02g15360 pycom08g06450 pycom15g26320
rosa_chinensis	RchiOBHm_Chr2g0108741 RchiOBHm_Chr6g0310031 RchiOBHm_Chr6g0310051
rosa_laevigata	RLG00000010515 RLG00000010516 RLG00000017688
rosa_multiflora	Rmu_sc0000294.1_g000016 Rmu_sc0010317.1_g000012
rosa_roxburghii	Rroxscaffold_2G00134850 Rroxscaffold_7G00158930 Rroxscaffold_7G00158940
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug06G0377000 Rorug06G0377100 Rorug06G0377100 Rorug06G0377200
rosa_samantha	Rh2AG205600 Rh2BG217300 Rh2CG208500 Rh2DG211800 Rh6AG490600 Rh6AG490700 Rh6BG500100 Rh6BG500200 Rh6CG505000 Rh6CG505100 Rh6DG491000 Rh6DG491100
rosa_wichuraiana	Rw2G016360 Rw6G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	121
AatII	GACGTC	2 cut(s)	59, 125
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	2 cut(s)	210, 504
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	168
AcyI	GRCGYC	2 cut(s)	56, 122
AfaI	GTAC	3 cut(s)	27, 184, 497
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	1 cut(s)	323
AhlI	ACTAGT	1 cut(s)	476
AluBI	AGCT	7 cut(s)	64, 136, 152, 344, 399, 407, 431
AluI	AGCT	7 cut(s)	64, 136, 152, 344, 399, 407, 431
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	211, 536
ApeKI	GCWGC	4 cut(s)	341, 404, 425, 428
ApoI	RAATTY	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	3 cut(s)	51, 52, 445
AsuHPI	GGTGA	1 cut(s)	296
AsuII	TTCGAA	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	50
BauI	CACGAG	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	311, 333
BbvI	GCAGC	4 cut(s)	353, 416, 437, 440
BccI	CCATC	3 cut(s)	79, 182, 253
BceAI	ACGGC	1 cut(s)	385
BcnI	CCSGG	3 cut(s)	51, 52, 445
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	3 cut(s)	291, 432, 477
BisI	GCNGC	5 cut(s)	211, 342, 405, 426, 429
BlsI	GCNGC	5 cut(s)	212, 343, 406, 427, 430
BmcAI	AGTACT	2 cut(s)	184, 497
Bme1390I	CCNGG	3 cut(s)	51, 52, 445
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	3 cut(s)	51, 52, 445
BmsI	GCATC	2 cut(s)	277, 354
BpiI	GAAGAC	2 cut(s)	311, 333
BpmI	CTGGAG	3 cut(s)	132, 211, 358
Bpu14I	TTCGAA	1 cut(s)	262
BpuMI	CCSGG	3 cut(s)	51, 52, 445
BsaHI	GRCGYC	2 cut(s)	56, 122
BsaJI	CCNNGG	2 cut(s)	50, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	50, 205
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	2 cut(s)	135, 490
BseXI	GCAGC	4 cut(s)	353, 416, 437, 440
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	213, 538
BsiEI	CGRYCG	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	51, 196, 444
BslFI	GGGAC	3 cut(s)	67, 112, 527
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	3 cut(s)	67, 112, 527
BsnI	GGCC	2 cut(s)	213, 538
BsoBI	CYCGRG	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	85, 100
BspACI	CCGC	2 cut(s)	210, 504
BspANI	GGCC	2 cut(s)	213, 538
BspLI	GGNNCC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	50, 205
BssMI	GATC	2 cut(s)	85, 100
BssNI	GRCGYC	2 cut(s)	56, 122
BssSI	CACGAG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	30
BstACI	GRCGYC	2 cut(s)	56, 122
BstBI	TTCGAA	1 cut(s)	262
BstDSI	CCRYGG	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	191
BstKTI	GATC	2 cut(s)	88, 103
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	85, 100
BstMCI	CGRYCG	1 cut(s)	88
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	3 cut(s)	49, 50, 443
BstV1I	GCAGC	4 cut(s)	353, 416, 437, 440
BstV2I	GAAGAC	2 cut(s)	311, 333
BsuRI	GGCC	2 cut(s)	213, 538
BtgI	CCRYGG	1 cut(s)	205
BtgZI	GCGATG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	212
Cfr9I	CCCGGG	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	26, 183, 496
CviAII	CATG	1 cut(s)	489
CviQI	GTAC	3 cut(s)	26, 183, 496
DpnI	GATC	2 cut(s)	87, 102
DpnII	GATC	2 cut(s)	85, 100
DrdI	GACNNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	50
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	1 cut(s)	492
FaiI	YATR	4 cut(s)	223, 402, 423, 490
FaqI	GGGAC	3 cut(s)	67, 112, 527
FatI	CATG	1 cut(s)	488
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	5 cut(s)	211, 342, 405, 426, 429
Fsp4HI	GCNGC	5 cut(s)	211, 342, 405, 426, 429
FspBI	CTAG	3 cut(s)	291, 432, 477
GluI	GCNGC	5 cut(s)	211, 342, 405, 426, 429
GsuI	CTGGAG	3 cut(s)	132, 211, 358
HaeIII	GGCC	2 cut(s)	213, 538
HapII	CCGG	3 cut(s)	51, 196, 444
Hin1I	GRCGYC	2 cut(s)	56, 122
Hin1II	CATG	1 cut(s)	492
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	77, 378
HpaII	CCGG	3 cut(s)	51, 196, 444
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	6, 416, 474
Hpy188I	TCNGA	3 cut(s)	76, 85, 275
Hpy188III	TCNNGA	4 cut(s)	112, 323, 375, 466
Hpy8I	GTNNAC	3 cut(s)	6, 416, 474
Hpy99I	CGWCG	4 cut(s)	13, 93, 124, 127
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	4 cut(s)	8, 56, 122, 257
HpyCH4V	TGCA	6 cut(s)	341, 357, 367, 404, 425, 533
HpySE526I	ACGT	4 cut(s)	8, 56, 122, 257
Hsp92I	GRCGYC	2 cut(s)	56, 122
Hsp92II	CATG	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	85, 100
LmnI	GCTCC	2 cut(s)	230, 377
LpnPI	CCDG	9 cut(s)	64, 162, 174, 209, 241, 374, 388, 457, 473
Lsp1109I	GCAGC	4 cut(s)	353, 416, 437, 440
LweI	GCATC	2 cut(s)	277, 354
MaeI	CTAG	3 cut(s)	291, 432, 477
MaeII	ACGT	4 cut(s)	8, 56, 122, 257
MaeIII	GTNAC	2 cut(s)	191, 379
MalI	GATC	2 cut(s)	87, 102
MboI	GATC	2 cut(s)	85, 100
MboII	GAAGA	5 cut(s)	55, 72, 311, 338, 460
MluCI	AATT	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	387
MnlI	CCTC	3 cut(s)	153, 156, 511
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	2 cut(s)	407, 506
MspI	CCGG	3 cut(s)	51, 196, 444
MspR9I	CCNGG	3 cut(s)	51, 52, 445
NciI	CCSGG	3 cut(s)	51, 52, 445
NdeII	GATC	2 cut(s)	85, 100
NlaIII	CATG	1 cut(s)	492
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	124
PkrI	GCNGC	5 cut(s)	212, 343, 406, 427, 430
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PspEI	GGTNACC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	212
PsyI	GACNNNGTC	1 cut(s)	124
PvuI	CGATCG	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	3 cut(s)	27, 184, 497
RsaNI	GTAC	3 cut(s)	26, 183, 496
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	5 cut(s)	211, 342, 405, 426, 429
Sau3AI	GATC	2 cut(s)	85, 100
Sau96I	GGNCC	1 cut(s)	212
ScaI	AGTACT	2 cut(s)	184, 497
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	3 cut(s)	51, 52, 445
SfaNI	GCATC	2 cut(s)	277, 354
SfuI	TTCGAA	1 cut(s)	262
SmaI	CCCGGG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	362
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	2 cut(s)	210, 504
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	3 cut(s)	291, 432, 477
StyD4I	CCNGG	3 cut(s)	49, 50, 443
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	4 cut(s)	11, 59, 125, 260
TaqI	TCGA	2 cut(s)	262, 467
TasI	AATT	1 cut(s)	168
TatI	WGTACW	2 cut(s)	182, 495
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	4 cut(s)	341, 404, 425, 428
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	337
TspMI	CCCGGG	1 cut(s)	50
TspRI	CASTG	1 cut(s)	235
Tth111I	GACNNNGTC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	168
XmaI	CCCGGG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	415
XspI	CTAG	3 cut(s)	291, 432, 477
ZraI	GACGTC	2 cut(s)	57, 123
ZrmI	AGTACT	2 cut(s)	184, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.