Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002584

Physical Location & Seq

Genomic Coordinates Reverse (-)

12489627 .. 12493329

Gene Structure 3703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGACAATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAGGGATTTTTGTACGGTGGTGGTGTTAGATCGGCGGCAAGGCTACTTACTTCGCCGGGACTTGAGGCGGCGTCTGTGAATGAAGTGGAAGGTGGATTAGGGTTTATAAGAAGACACTTTGCTTCTTTAGCTTCACGGAAGGGTTTAGTCAATAATGATTTGATTGGTGTTTTTGCTAATCCAAGACTTCGTAGATTCTTCTCTGATGAAGCTCCTAAGAAGAAGAATTATGAGAACTATTTTCCTAAAGATAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGAGGGTTCAGAAAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACCGATTCCAAAATTTGCTAATTCCTCTACTAGCTCTTGCTGTATTCTTTTCTACTTTCTCGTTTGGCTCTGGGGAACAACAACAGATAAGTTTCCAGGAGTTCAAAAACAAGCTACTCGAGCCTGGTTTAGTTGACCACATAGATGTTTCAAACAAATCAGTAGCAAAAGTCTACGTGAGGAGCACACCGAAAGACCAACAAACAACTGACGTTGTCCATGGTAATGGTAACGGTATTCCTGCTAAAAGAACTGGTGGTCAGTATAAGTACTACTTCAATATCGGTAGTGTTGATTCTTTTGAGGAGAAACTCGAAGAAGCTCAAGAAGCGTTAGGTGTTGATCGTCATGAATATGTTCCTGTCACATACGTCTCTGAAATGGTCTGGTATCAAGAGTTCATGAGGTTTGCACCGACTTTGTTGCTCTTGGGTACTCTGATCTATGGTGCGAGACGGATGCAAGGTGGATTGGGTGTAGGAGGAACTGGCGGTAAGAATGGTCGTGGAATTTTCAATATAGGCAAAGCTACAATAACGAGAGCTGATAAACATTCCAAGAATAAGATTTATTTCAAGGATGTTGCTGGATGTGACGAGGCTAAACAAGAAATTATGGAGTTTGTACATTTCCTTAAGAACCCAAAGAAGTATGAAGATTTGGGTGCTAAAATTCCGAAAGGTGCACTTTTAGTCGGTCCGCCTGGAACCGGAAAGACCCTTTTAGCAAAAGCCACAGCAGGAGAATCTGGTGTGCCATTTCTGTCTATTTCTGGCTCAGATTTCATGGAGATGTTTGTTGGTGTTGGGCCTTCGAGGGTGAGACATTTGTTCCAAGAGGCGAGACAAGCTGCACCGAGCATTATATTTATCGATGAGATTGATGCTATTGGTCGGGCAAGAGGTCGTGGAGGTTTAGGCGGAAATGATGAGCGTGAAAGCACTCTGAATCAGTTGCTAGTTGAAATGGATGGTTTTGGTACAACCGCTGGTGTTGTGGTTCTTGCTGGAACCAACAGACCGGATATTTTGGATAAAGCTTTGTTAAGGCCTGGACGTTTTGATCGCCAGATAACTATTGATAAACCTGATATCAAAGGGCGTGATCAGATTTTCAAGATTTACTTGAAGAAGATCAAACTTGATCATGAGCCATCATATTACTCTCAAAGGCTTGCTGCTCTCACTCCCGGGTTTGCAGGAGCTGACATTGCGAATGTCTGTAACGAAGCAGCTCTTATTGCTGCTAGACACGAAGGAGCAACGGTTACTATGGCACACTTTGAATCTGCGATTGATCGTGTTATTGGTGGTCTTGAGAAGAAAAACCGGGTGATAAGCAAGTTGGAGCGACGTACAGTTGCATATCATGAATCTGGTCACGCAGTTGTAGGGTGGTTCCTTGAACATGCAGAGCCGTTACTGAAAGTGACTATTGTACCACGTGGCACAGCGGCTCTCGGATTTGCACAATACGTTCCAAACGAAAACCTTCTCATGACCAAAGAGCAACTCTTTGACATGACTTGCATGACTCTCGGAGGCCGTGCAGCTGAGCAGGTATTGATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTGACGAAGATGACTTACGCGCAAGTAGCTGTGTATGGTTTCAGTGACAAGGTTGGGCTACTCTCGTTTCCACCAAGGGATGATGGCTACGACTTCTCTAAACCATACAGCAACAAAACCGGTGCTATCATAGACGAAGAAGTTAGGGACTGGGTGGCCAAAGCTTATGAGCGGACCGTAGAGCTGGTTGAGGAACACAAAGTGAAAGTGGCTGAGATCGCCGAGCTTTTACTAGAGAAAGAGGTGTTGCATCAGGATGATCTCTTAAAAATTTTAGGTGAACGTCCGTTTAAGTCAGCTGAGGTCACTAATTATGACCGGTTCAAGTCTGGGTTTGAAGAGACTGAGAAGGACTCAGCCGCCACCCCTACAGTGGAGCCTGTGGTGGATGATGGAGCTCCCCCGCCGTTTGAACCCCAGGTTGTTCCGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

809

Amino Acids

89.35

Weight (kDa)

6.8

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsH_ext	PF06480	136 - 246	5.4e-13	FtsH Extracellular
AAA	PF00004	359 - 490	5.9e-43	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	520 - 558	3.3e-12	AAA+ lid domain
Peptidase_M41	PF01434	573 - 755	1.7e-65	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07510 AT2G29080
fragaria_vesca	FvH4_3g36790 FvH4_3g36790 FvH4_3g36790 FvH4_6g13480 FvH4_6g13480 FvH4_6g13480
malus_domestica	MD03G1088300.v1.1 MD03G1088400.v1.1 MD04G1130900.v1.1 MD11G1097400.v1.1 MD12G1144000.v1.1
prunus_persica	Prupe.6G072600_v2.0.a1 Prupe.6G257400_v2.0.a1 Prupe.6G257400_v2.0.a1
pyrus_communis	pycom03g06980 pycom03g07000 pycom04g11920 pycom11g08210 pycom12g13860
rosa_chinensis	RchiOBHm_Chr3g0466351 RchiOBHm_Chr5g0065851
rosa_laevigata	RLG00000024582 RLG00000035821
rosa_multiflora	Rmu_sc0003480.1_g000012 Rmu_sc0042868.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015310 Rroxscaffold_6G00414550
rosa_rugosa	Rorug03G0081200 Rorug05G0374100 Rorug05G0374200 Rorug05G0374300
rosa_samantha	Rh3BG148900 Rh3DG149600 Rh5BG449200 Rh5CG471400 Rh5DG462800
rosa_wichuraiana	Rw3G012050 Rw5G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	155
Acc16I	TGCGCA	1 cut(s)	1977
Acc36I	ACCTGC	1 cut(s)	1936
AccBSI	CCGCTC	1 cut(s)	2167
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	2015
AcoI	YGGCCR	1 cut(s)	2151
AcsI	RAATTY	4 cut(s)	400, 897, 1059, 2265
AcvI	CACGTG	1 cut(s)	1832
AcyI	GRCGYC	1 cut(s)	119
AdeI	CACNNNGTG	1 cut(s)	2197
AfaI	GTAC	7 cut(s)	62, 659, 823, 1014, 1369, 1744, 1827
AfiI	CCNNNNNNNGG	2 cut(s)	1097, 2368
AflII	CTTAAG	1 cut(s)	1022
AgeI	ACCGGT	2 cut(s)	2114, 2313
AjnI	CCWGG	5 cut(s)	483, 511, 1090, 1438, 2412
Alw21I	GWGCWC	3 cut(s)	575, 1075, 2395
Alw26I	GTCTC	5 cut(s)	766, 835, 1204, 1225, 2330
Alw44I	GTGCAC	1 cut(s)	1071
AlwNI	CAGNNNCTG	1 cut(s)	1592
Ama87I	CYCGRG	2 cut(s)	506, 1577
AoxI	GGCC	4 cut(s)	1196, 1436, 1930, 2151
ApaLI	GTGCAC	1 cut(s)	1071
ApeKI	GCWGC	5 cut(s)	1238, 1565, 1619, 1631, 1937
ApoI	RAATTY	4 cut(s)	400, 897, 1059, 2265
AsiGI	ACCGGT	2 cut(s)	2114, 2313
Asp700I	GAANNNNTTC	3 cut(s)	392, 744, 1878
AspLEI	GCGC	2 cut(s)	1978, 2017
AspS9I	GGNCC	3 cut(s)	1085, 1196, 2169
AsuC2I	CCSGG	4 cut(s)	105, 1578, 1579, 1718
AsuHPI	GGTGA	4 cut(s)	1219, 1732, 2008, 2285
AvaI	CYCGRG	2 cut(s)	506, 1577
AvaII	GGWCC	2 cut(s)	1085, 2169
BaeGI	GKGCMC	1 cut(s)	1075
BaeI	ACNNNNGTAYC	2 cut(s)	1809, 1842
BalI	TGGCCA	1 cut(s)	2153
BanII	GRGCYC	1 cut(s)	2395
BarI	GAAGNNNNNNTAC	2 cut(s)	1994, 2026
BbrPI	CACGTG	1 cut(s)	1832
BbsI	GAAGAC	1 cut(s)	166
Bbv12I	GWGCWC	3 cut(s)	575, 1075, 2395
BbvCI	CCTCAGC	1 cut(s)	2295
BbvI	GCAGC	5 cut(s)	1225, 1552, 1618, 1631, 1949
BccI	CCATC	4 cut(s)	1352, 1549, 2072, 2381
BceAI	ACGGC	3 cut(s)	1789, 1917, 2386
BcgI	CGANNNNNNTGC	6 cut(s)	793, 827, 829, 863, 1906, 1940
BciT130I	CCWGG	5 cut(s)	485, 513, 1092, 1440, 2414
BclI	TGATCA	3 cut(s)	319, 1492, 1531
BcnI	CCSGG	4 cut(s)	105, 1578, 1579, 1718
BcoDI	GTCTC	5 cut(s)	766, 835, 1204, 1225, 2330
BfaI	CTAG	5 cut(s)	419, 1346, 1635, 1988, 2228
BfmI	CTRYAG	1 cut(s)	2364
BfrI	CTTAAG	1 cut(s)	1022
BfuAI	ACCTGC	1 cut(s)	1936
BisI	GCNGC	9 cut(s)	84, 117, 1239, 1566, 1620, 1632, 1842, 1938, 2355
BlpI	GCTNAGC	1 cut(s)	1941
BlsI	GCNGC	9 cut(s)	85, 118, 1240, 1567, 1621, 1633, 1843, 1939, 2356
BmcAI	AGTACT	1 cut(s)	659
Bme1390I	CCNGG	9 cut(s)	105, 485, 513, 1092, 1440, 1578, 1579, 1718, 2414
Bme18I	GGWCC	2 cut(s)	1085, 2169
BmeT110I	CYCGRG	2 cut(s)	506, 1577
BmgT120I	GGNCC	3 cut(s)	1085, 1196, 2169
BmiI	GGNNCC	4 cut(s)	1096, 1399, 1787, 2373
BmrFI	CCNGG	9 cut(s)	105, 485, 513, 1092, 1440, 1578, 1579, 1718, 2414
BmrI	ACTGGG	1 cut(s)	2155
BmsI	GCATC	3 cut(s)	837, 1261, 2254
BmuI	ACTGGG	1 cut(s)	2155
BpiI	GAAGAC	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	2333, 2365
Bpu10I	CCTNAGC	1 cut(s)	2295
Bpu1102I	GCTNAGC	1 cut(s)	1941
BpuEI	CTTGAG	3 cut(s)	131, 696, 1724
BpuMI	CCSGG	4 cut(s)	105, 1578, 1579, 1718
Bsa29I	ATCGAT	1 cut(s)	1260
BsaAI	YACGTR	2 cut(s)	565, 1832
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	4 cut(s)	607, 1577, 2069, 2412
BsaWI	WCCGGW	4 cut(s)	1097, 1408, 2114, 2313
BsaXI	ACNNNNNCTCC	2 cut(s)	1638, 1668
Bsc4I	CCNNNNNNNGG	2 cut(s)	1097, 2368
Bse118I	RCCGGY	2 cut(s)	2114, 2313
Bse1I	ACTGG	3 cut(s)	646, 880, 2150
Bse3DI	GCAATG	1 cut(s)	1596
BseBI	CCWGG	5 cut(s)	485, 513, 1092, 1440, 2414
BseCI	ATCGAT	1 cut(s)	1260
BseDI	CCNNGG	4 cut(s)	607, 1577, 2069, 2412
BseGI	GGATG	7 cut(s)	852, 973, 983, 1363, 2080, 2257, 2389
BseLI	CCNNNNNNNGG	2 cut(s)	1097, 2368
BseMI	GCAATG	1 cut(s)	1596
BseMII	CTCAG	6 cut(s)	1179, 1932, 2199, 2286, 2331, 2364
BseNI	ACTGG	3 cut(s)	646, 880, 2150
BseRI	GAGGAG	2 cut(s)	583, 707
BseSI	GKGCMC	1 cut(s)	1075
BseXI	GCAGC	5 cut(s)	1225, 1552, 1618, 1631, 1949
BsgI	GTGCAG	2 cut(s)	1224, 1956
Bsh1236I	CGCG	1 cut(s)	2015
BshFI	GGCC	4 cut(s)	1198, 1438, 1932, 2153
BshTI	ACCGGT	2 cut(s)	2114, 2313
BshVI	ATCGAT	1 cut(s)	1260
BsiHKAI	GWGCWC	3 cut(s)	575, 1075, 2395
BsiHKCI	CYCGRG	2 cut(s)	506, 1577
BsiSI	CCGG	7 cut(s)	104, 1098, 1409, 1578, 1717, 2115, 2314
BslFI	GGGAC	2 cut(s)	120, 2156
BslI	CCNNNNNNNGG	2 cut(s)	1097, 2368
BsmAI	GTCTC	5 cut(s)	766, 835, 1204, 1225, 2330
BsmBI	CGTCTC	2 cut(s)	766, 835
BsmFI	GGGAC	2 cut(s)	120, 2156
BsnI	GGCC	4 cut(s)	1198, 1438, 1932, 2153
BsoBI	CYCGRG	2 cut(s)	506, 1577
Bsp1286I	GDGCHC	3 cut(s)	575, 1075, 2395
Bsp1407I	TGTACA	1 cut(s)	1012
Bsp1720I	GCTNAGC	1 cut(s)	1941
Bsp19I	CCATGG	1 cut(s)	607
BspANI	GGCC	4 cut(s)	1198, 1438, 1932, 2153
BspCNI	CTCAG	6 cut(s)	1178, 1933, 2200, 2287, 2332, 2363
BspDI	ATCGAT	1 cut(s)	1260
BspFNI	CGCG	1 cut(s)	2015
BspHI	TCATGA	6 cut(s)	384, 736, 789, 1534, 1756, 1884
BspLI	GGNNCC	4 cut(s)	1096, 1399, 1787, 2373
BspMI	ACCTGC	1 cut(s)	1936
BspTI	CTTAAG	1 cut(s)	1022
BsrBI	CCGCTC	1 cut(s)	2167
BsrDI	GCAATG	1 cut(s)	1596
BsrFI	RCCGGY	2 cut(s)	2114, 2313
BsrGI	TGTACA	1 cut(s)	1012
BsrI	ACTGG	3 cut(s)	646, 880, 2150
BssAI	RCCGGY	2 cut(s)	2114, 2313
BssECI	CCNNGG	4 cut(s)	607, 1577, 2069, 2412
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	2 cut(s)	607, 2069
Bst2UI	CCWGG	5 cut(s)	485, 513, 1092, 1440, 2414
Bst4CI	ACNGT	6 cut(s)	65, 623, 1654, 1747, 2173, 2368
Bst6I	CTCTTC	1 cut(s)	2328
BstACI	GRCGYC	1 cut(s)	119
BstAFI	CTTAAG	1 cut(s)	1022
BstAUI	TGTACA	1 cut(s)	1012
BstBAI	YACGTR	2 cut(s)	565, 1832
BstC8I	GCNNGC	1 cut(s)	1563
BstDEI	CTNAG	8 cut(s)	21, 264, 1165, 1941, 2208, 2295, 2340, 2350
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	7 cut(s)	852, 973, 983, 1363, 2080, 2257, 2389
BstFNI	CGCG	1 cut(s)	2015
BstHHI	GCGC	2 cut(s)	1978, 2017
BstMAI	GTCTC	5 cut(s)	766, 835, 1204, 1225, 2330
BstMWI	GCNNNNNNNGC	8 cut(s)	176, 508, 716, 1235, 1598, 1628, 2021, 2213
BstNI	CCWGG	5 cut(s)	485, 513, 1092, 1440, 2414
BstNSI	RCATGY	1 cut(s)	1799
BstSCI	CCNGG	9 cut(s)	103, 483, 511, 1090, 1438, 1576, 1577, 1716, 2412
BstSFI	CTRYAG	1 cut(s)	2364
BstSLI	GKGCMC	1 cut(s)	1075
BstUI	CGCG	1 cut(s)	2015
BstV1I	GCAGC	5 cut(s)	1225, 1552, 1618, 1631, 1949
BstV2I	GAAGAC	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	1260
BsuRI	GGCC	4 cut(s)	1198, 1438, 1932, 2153
BsuTUI	ATCGAT	1 cut(s)	1260
BtgI	CCRYGG	1 cut(s)	607
BtsCI	GGATG	7 cut(s)	852, 973, 983, 1363, 2080, 2257, 2389
BtsIMutI	CAGTG	2 cut(s)	2044, 2373
BveI	ACCTGC	1 cut(s)	1936
Cac8I	GCNNGC	1 cut(s)	1563
CaiI	CAGNNNCTG	1 cut(s)	1592
CciI	TCATGA	6 cut(s)	384, 736, 789, 1534, 1756, 1884
CfoI	GCGC	2 cut(s)	1978, 2017
Cfr10I	RCCGGY	2 cut(s)	2114, 2313
Cfr13I	GGNCC	3 cut(s)	1085, 1196, 2169
Cfr9I	CCCGGG	1 cut(s)	1577
ClaI	ATCGAT	1 cut(s)	1260
CpoI	CGGWCCG	2 cut(s)	1085, 2169
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	7 cut(s)	61, 658, 822, 1013, 1368, 1743, 1826
CspAI	ACCGGT	2 cut(s)	2114, 2313
CspI	CGGWCCG	2 cut(s)	1085, 2169
CviQI	GTAC	7 cut(s)	61, 658, 822, 1013, 1368, 1743, 1826
DdeI	CTNAG	8 cut(s)	21, 264, 1165, 1941, 2208, 2295, 2340, 2350
DraIII	CACNNNGTG	1 cut(s)	2197
EaeI	YGGCCR	1 cut(s)	2151
Eam1104I	CTCTTC	1 cut(s)	2328
EarI	CTCTTC	1 cut(s)	2328
EciI	GGCGGA	2 cut(s)	1077, 1323
Ecl136II	GAGCTC	1 cut(s)	2393
Eco130I	CCWWGG	2 cut(s)	607, 2069
Eco147I	AGGCCT	1 cut(s)	1438
Eco24I	GRGCYC	1 cut(s)	2395
Eco32I	GATATC	1 cut(s)	1480
Eco47I	GGWCC	2 cut(s)	1085, 2169
Eco53kI	GAGCTC	1 cut(s)	2393
Eco72I	CACGTG	1 cut(s)	1832
Eco88I	CYCGRG	2 cut(s)	506, 1577
EcoICRI	GAGCTC	1 cut(s)	2393
EcoRII	CCWGG	5 cut(s)	483, 511, 1090, 1438, 2412
EcoRV	GATATC	1 cut(s)	1480
EcoT14I	CCWWGG	2 cut(s)	607, 2069
EcoT38I	GRGCYC	1 cut(s)	2395
ErhI	CCWWGG	2 cut(s)	607, 2069
Esp3I	CGTCTC	2 cut(s)	766, 835
FalI	AAGNNNNNCTT	8 cut(s)	647, 679, 1059, 1091, 1496, 1528, 1608, 1640
FaqI	GGGAC	2 cut(s)	120, 2156
FauI	CCCGC	1 cut(s)	2406
FbaI	TGATCA	3 cut(s)	319, 1492, 1531
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	9 cut(s)	84, 117, 1239, 1566, 1620, 1632, 1842, 1938, 2355
FokI	GGATG	7 cut(s)	859, 980, 990, 1370, 2087, 2264, 2396
FriOI	GRGCYC	1 cut(s)	2395
Fsp4HI	GCNGC	9 cut(s)	84, 117, 1239, 1566, 1620, 1632, 1842, 1938, 2355
FspBI	CTAG	5 cut(s)	419, 1346, 1635, 1988, 2228
FspI	TGCGCA	1 cut(s)	1977
GlaI	GCGC	2 cut(s)	1977, 2016
GluI	GCNGC	9 cut(s)	84, 117, 1239, 1566, 1620, 1632, 1842, 1938, 2355
HaeIII	GGCC	4 cut(s)	1198, 1438, 1932, 2153
HapII	CCGG	7 cut(s)	104, 1098, 1409, 1578, 1717, 2115, 2314
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	2 cut(s)	1978, 2017
Hin1I	GRCGYC	1 cut(s)	119
Hin6I	GCGC	2 cut(s)	1976, 2015
HinP1I	GCGC	2 cut(s)	1976, 2015
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	3 cut(s)	23, 1425, 2157
HinfI	GANTC	9 cut(s)	243, 393, 683, 1133, 1336, 1673, 1760, 1921, 2348
HpaII	CCGG	7 cut(s)	104, 1098, 1409, 1578, 1717, 2115, 2314
HphI	GGTGA	4 cut(s)	1219, 1732, 2008, 2285
Hpy166II	GTNNAC	4 cut(s)	523, 562, 1073, 2276
Hpy8I	GTNNAC	4 cut(s)	523, 562, 1073, 2276
Hpy99I	CGWCG	2 cut(s)	1743, 2428
HpyAV	CCTTC	7 cut(s)	131, 181, 1209, 1637, 1889, 1987, 2338
HpyCH4III	ACNGT	6 cut(s)	65, 623, 1654, 1747, 2173, 2368
HpyCH4IV	ACGT	9 cut(s)	564, 600, 759, 1444, 1741, 1831, 1863, 2278, 2426
HpyF10VI	GCNNNNNNNGC	8 cut(s)	176, 508, 716, 1235, 1598, 1628, 2021, 2213
HpyF3I	CTNAG	8 cut(s)	21, 264, 1165, 1941, 2208, 2295, 2340, 2350
HpySE526I	ACGT	9 cut(s)	564, 600, 759, 1444, 1741, 1831, 1863, 2278, 2426
Hsp92I	GRCGYC	1 cut(s)	119
HspAI	GCGC	2 cut(s)	1976, 2015
Ksp22I	TGATCA	3 cut(s)	319, 1492, 1531
LmnI	GCTCC	9 cut(s)	38, 265, 570, 1589, 1646, 1735, 2371, 2390, 2398
Lsp1109I	GCAGC	5 cut(s)	1225, 1552, 1618, 1631, 1949
LweI	GCATC	3 cut(s)	837, 1261, 2254
MaeI	CTAG	5 cut(s)	419, 1346, 1635, 1988, 2228
MaeII	ACGT	9 cut(s)	564, 600, 759, 1444, 1741, 1831, 1863, 2278, 2426
MbiI	CCGCTC	1 cut(s)	2167
MhlI	GDGCHC	3 cut(s)	575, 1075, 2395
MlsI	TGGCCA	1 cut(s)	2153
MluCI	AATT	8 cut(s)	274, 400, 408, 897, 999, 1059, 2265, 2305
MluNI	TGGCCA	1 cut(s)	2153
MlyI	GAGTC	2 cut(s)	1915, 2342
MmeI	TCCRAC	1 cut(s)	1713
Mox20I	TGGCCA	1 cut(s)	2153
MroXI	GAANNNNTTC	3 cut(s)	392, 744, 1878
MscI	TGGCCA	1 cut(s)	2153
MseI	TTAA	5 cut(s)	27, 1023, 1433, 2261, 2286
MslI	CAYNNNNRTG	5 cut(s)	531, 612, 741, 1178, 2250
Msp20I	TGGCCA	1 cut(s)	2153
MspA1I	CMGCKG	4 cut(s)	1376, 1841, 1940, 2294
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	7 cut(s)	104, 1098, 1409, 1578, 1717, 2115, 2314
MspR9I	CCNGG	9 cut(s)	105, 485, 513, 1092, 1440, 1578, 1579, 1718, 2414
MvaI	CCWGG	5 cut(s)	485, 513, 1092, 1440, 2414
MvnI	CGCG	1 cut(s)	2015
MwoI	GCNNNNNNNGC	8 cut(s)	176, 508, 716, 1235, 1598, 1628, 2021, 2213
NciI	CCSGG	4 cut(s)	105, 1578, 1579, 1718
NcoI	CCATGG	1 cut(s)	607
NlaIV	GGNNCC	4 cut(s)	1096, 1399, 1787, 2373
NmeAIII	GCCGAG	1 cut(s)	2242
NmuCI	GTSAC	7 cut(s)	751, 980, 1766, 1816, 1996, 2039, 2299
NsbI	TGCGCA	1 cut(s)	1977
NspI	RCATGY	1 cut(s)	1799
PaeR7I	CTCGAG	1 cut(s)	506
PagI	TCATGA	6 cut(s)	384, 736, 789, 1534, 1756, 1884
PceI	AGGCCT	1 cut(s)	1438
PcsI	WCGNNNNNNNCGW	1 cut(s)	1869
PdmI	GAANNNNTTC	3 cut(s)	392, 744, 1878
PfeI	GAWTC	7 cut(s)	243, 393, 683, 1133, 1336, 1673, 1760
PflFI	GACNNNGTC	1 cut(s)	602
PfoI	TCCNGGA	1 cut(s)	483
PinAI	ACCGGT	2 cut(s)	2114, 2313
PkrI	GCNGC	9 cut(s)	85, 118, 1240, 1567, 1621, 1633, 1843, 1939, 2356
PleI	GAGTC	2 cut(s)	1915, 2342
PmaCI	CACGTG	1 cut(s)	1832
PmlI	CACGTG	1 cut(s)	1832
PpsI	GAGTC	2 cut(s)	1915, 2342
Ppu21I	YACGTR	2 cut(s)	565, 1832
PsiI	TTATAA	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	2395
Psp6I	CCWGG	5 cut(s)	483, 511, 1090, 1438, 2412
PspCI	CACGTG	1 cut(s)	1832
PspGI	CCWGG	5 cut(s)	483, 511, 1090, 1438, 2412
PspN4I	GGNNCC	4 cut(s)	1096, 1399, 1787, 2373
PspPI	GGNCC	3 cut(s)	1085, 1196, 2169
PspXI	VCTCGAGB	1 cut(s)	506
PsrI	GAACNNNNNNTAC	2 cut(s)	770, 802
PstNI	CAGNNNCTG	1 cut(s)	1592
PsyI	GACNNNGTC	1 cut(s)	602
PvuII	CAGCTG	2 cut(s)	1940, 2294
RsaI	GTAC	7 cut(s)	62, 659, 823, 1014, 1369, 1744, 1827
RsaNI	GTAC	7 cut(s)	61, 658, 822, 1013, 1368, 1743, 1826
RseI	CAYNNNNRTG	5 cut(s)	531, 612, 741, 1178, 2250
Rsr2I	CGGWCCG	2 cut(s)	1085, 2169
RsrII	CGGWCCG	2 cut(s)	1085, 2169
SacI	GAGCTC	1 cut(s)	2395
SaqAI	TTAA	5 cut(s)	27, 1023, 1433, 2261, 2286
SatI	GCNGC	9 cut(s)	84, 117, 1239, 1566, 1620, 1632, 1842, 1938, 2355
Sau96I	GGNCC	3 cut(s)	1085, 1196, 2169
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	2 cut(s)	1915, 2342
ScrFI	CCNGG	9 cut(s)	105, 485, 513, 1092, 1440, 1578, 1579, 1718, 2414
SduI	GDGCHC	3 cut(s)	575, 1075, 2395
SfaNI	GCATC	3 cut(s)	837, 1261, 2254
SfcI	CTRYAG	1 cut(s)	2364
Sfr274I	CTCGAG	1 cut(s)	506
SinI	GGWCC	2 cut(s)	1085, 2169
SlaI	CTCGAG	1 cut(s)	506
SmaI	CCCGGG	1 cut(s)	1579
SmiMI	CAYNNNNRTG	5 cut(s)	531, 612, 741, 1178, 2250
SmlI	CTYRAG	5 cut(s)	110, 506, 711, 1022, 1703
SmoI	CTYRAG	5 cut(s)	110, 506, 711, 1022, 1703
Sse9I	AATT	8 cut(s)	274, 400, 408, 897, 999, 1059, 2265, 2305
SseBI	AGGCCT	1 cut(s)	1438
SspMI	CTAG	5 cut(s)	419, 1346, 1635, 1988, 2228
SstI	GAGCTC	1 cut(s)	2395
StuI	AGGCCT	1 cut(s)	1438
StyD4I	CCNGG	9 cut(s)	103, 483, 511, 1090, 1438, 1576, 1577, 1716, 2412
StyI	CCWWGG	2 cut(s)	607, 2069
TaaI	ACNGT	6 cut(s)	65, 623, 1654, 1747, 2173, 2368
TaiI	ACGT	9 cut(s)	567, 603, 762, 1447, 1744, 1834, 1866, 2281, 2429
TaqI	TCGA	4 cut(s)	507, 702, 1202, 1260
TaqII	GACCGA	1 cut(s)	1073
TasI	AATT	8 cut(s)	274, 400, 408, 897, 999, 1059, 2265, 2305
TatI	WGTACW	2 cut(s)	657, 1012
TauI	GCSGC	4 cut(s)	86, 119, 1844, 2357
TfiI	GAWTC	7 cut(s)	243, 393, 683, 1133, 1336, 1673, 1760
Tru1I	TTAA	5 cut(s)	27, 1023, 1433, 2261, 2286
Tru9I	TTAA	5 cut(s)	27, 1023, 1433, 2261, 2286
TscAI	CASTG	2 cut(s)	2044, 2373
TseFI	GTSAC	7 cut(s)	751, 980, 1766, 1816, 1996, 2039, 2299
TseI	GCWGC	5 cut(s)	1238, 1565, 1619, 1631, 1937
Tsp45I	GTSAC	7 cut(s)	751, 980, 1766, 1816, 1996, 2039, 2299
TspGWI	ACGGA	3 cut(s)	199, 859, 2271
TspMI	CCCGGG	1 cut(s)	1577
TspRI	CASTG	2 cut(s)	2044, 2373
Tth111I	GACNNNGTC	1 cut(s)	602
Vha464I	CTTAAG	1 cut(s)	1022
VneI	GTGCAC	1 cut(s)	1071
VpaK11BI	GGWCC	2 cut(s)	1085, 2169
XapI	RAATTY	4 cut(s)	400, 897, 1059, 2265
XbaI	TCTAGA	1 cut(s)	1987
XceI	RCATGY	1 cut(s)	1799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2365
XhoI	CTCGAG	1 cut(s)	506
XmaI	CCCGGG	1 cut(s)	1577
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	3 cut(s)	392, 744, 1878
XspI	CTAG	5 cut(s)	419, 1346, 1635, 1988, 2228
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.