Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002584

Physical Location & Seq

Genomic Coordinates Reverse (-)

22320569 .. 22321901

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1144000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTTTTCTCAAGCATCAGACGCTCGATCACCCACTCGGCTCGTTCCAAACTCAATAGAAATGTGATTTCGGGTTCTTACAACTGGAGGAACACGCTGCGGCACGATTCCTTTCCGCCGTCTTTGACGCCGCTCGGCAATGCGTGCGTTGATGGCTGCGTAGGGATTCTGAGGGGATATATAGCTTACAATGGAGCTGGGAAGCAGCTCTTATCGAAAGCATACATGTCGAATTTGAAGTCTGTTCTCGGAATCCCTAGAATTCGTCGCTTGTTCTCCAGCCAAGGCCCCGGGAAAAAAACATTACGAAAACTATTATCCGAAAAACAAGAAGGAAATTCCGAAAGGGGGCGAACAGAAATCAGCGTCCAAAGAGGGATCAGGTGCAGGTGGTCAGGGGAATACTCGGGGACAGTTTTCGAAGCAGATTCAAGATTTATTGCTCCTTTAATGTTCATTGGCTTTATTGTCACATCATTATTCCTTAATCCTCATCAAACGAAGGAGGTAATCACTAAGCAGAAACTAGTTTATTTGGATCGCTTTCGCGTAGGATTAAGATTACCTTCATGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

193

Amino Acids

21.6

Weight (kDa)

10.69

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07510 AT2G29080
fragaria_vesca	FvH4_3g36790 FvH4_3g36790 FvH4_3g36790 FvH4_6g13480 FvH4_6g13480 FvH4_6g13480
malus_domestica	MD03G1088300.v1.1 MD03G1088400.v1.1 MD04G1130900.v1.1 MD11G1097400.v1.1 MD12G1144000.v1.1
prunus_persica	Prupe.6G072600_v2.0.a1 Prupe.6G257400_v2.0.a1 Prupe.6G257400_v2.0.a1
pyrus_communis	pycom03g06980 pycom03g07000 pycom04g11920 pycom11g08210 pycom12g13860
rosa_chinensis	RchiOBHm_Chr3g0466351 RchiOBHm_Chr5g0065851
rosa_laevigata	RLG00000024582 RLG00000035821
rosa_multiflora	Rmu_sc0003480.1_g000012 Rmu_sc0042868.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015310 Rroxscaffold_6G00414550
rosa_rugosa	Rorug03G0081200 Rorug05G0374100 Rorug05G0374200 Rorug05G0374300
rosa_samantha	Rh3BG148900 Rh3DG149600 Rh5BG449200 Rh5CG471400 Rh5DG462800
rosa_wichuraiana	Rw3G012050 Rw5G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	378
AccBSI	CCGCTC	1 cut(s)	133
AccII	CGCG	1 cut(s)	549
AciI	CCGC	3 cut(s)	100, 116, 131
AclWI	GGATC	2 cut(s)	386, 546
AcsI	RAATTY	3 cut(s)	232, 261, 337
AcyI	GRCGYC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	348
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	238, 432
AhlI	ACTAGT	1 cut(s)	526
AluBI	AGCT	3 cut(s)	185, 197, 208
AluI	AGCT	3 cut(s)	185, 197, 208
AlwI	GGATC	2 cut(s)	386, 546
Ama87I	CYCGRG	2 cut(s)	290, 406
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	3 cut(s)	97, 156, 205
ApoI	RAATTY	3 cut(s)	232, 261, 337
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	2 cut(s)	291, 292
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	420
AvaI	CYCGRG	2 cut(s)	290, 406
BbvI	GCAGC	3 cut(s)	84, 143, 217
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BcnI	CCSGG	2 cut(s)	291, 292
BcuI	ACTAGT	1 cut(s)	526
BfaI	CTAG	2 cut(s)	258, 527
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	5 cut(s)	98, 101, 131, 157, 206
BlsI	GCNGC	5 cut(s)	99, 102, 132, 158, 207
Bme1390I	CCNGG	2 cut(s)	291, 292
BmeT110I	CYCGRG	2 cut(s)	290, 406
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	291, 292
BmsI	GCATC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	106, 262
Bpu14I	TTCGAA	1 cut(s)	420
BpuMI	CCSGG	2 cut(s)	291, 292
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	283, 289, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	145
BseDI	CCNNGG	3 cut(s)	283, 289, 290
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	84, 143, 217
BseYI	CCCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	549
BshFI	GGCC	1 cut(s)	288
BsiHKCI	CYCGRG	2 cut(s)	290, 406
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	288
BsoBI	CYCGRG	2 cut(s)	290, 406
Bsp119I	TTCGAA	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	27, 378, 538
BspACI	CCGC	3 cut(s)	100, 116, 131
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	378
BspPI	GGATC	2 cut(s)	386, 546
BspT104I	TTCGAA	1 cut(s)	420
BsrBI	CCGCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	283, 289, 290
BssMI	GATC	3 cut(s)	27, 378, 538
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	415
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	170, 516
BstFNI	CGCG	1 cut(s)	549
BstKTI	GATC	3 cut(s)	30, 381, 541
BstMBI	GATC	3 cut(s)	27, 378, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 144, 153
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	289, 290
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	3 cut(s)	84, 143, 217
BsuRI	GGCC	1 cut(s)	288
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	287
Cfr9I	CCCGGG	1 cut(s)	290
CseI	GACGC	3 cut(s)	30, 136, 355
CviAII	CATG	2 cut(s)	226, 570
CviJI	RGCY	8 cut(s)	41, 156, 185, 197, 208, 282, 288, 462
CviKI_1	RGCY	8 cut(s)	41, 156, 185, 197, 208, 282, 288, 462
DdeI	CTNAG	2 cut(s)	170, 516
DpnI	GATC	3 cut(s)	29, 380, 540
DpnII	GATC	3 cut(s)	27, 378, 538
EciI	GGCGGA	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	283
Eco88I	CYCGRG	2 cut(s)	290, 406
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	2 cut(s)	229, 573
FaiI	YATR	5 cut(s)	180, 182, 223, 227, 571
FalI	AAGNNNNNCTT	3 cut(s)	194, 226, 550
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	2 cut(s)	225, 569
Fnu4HI	GCNGC	5 cut(s)	98, 101, 131, 157, 206
Fsp4HI	GCNGC	5 cut(s)	98, 101, 131, 157, 206
FspBI	CTAG	2 cut(s)	258, 527
GluI	GCNGC	5 cut(s)	98, 101, 131, 157, 206
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	2 cut(s)	106, 262
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	3 cut(s)	30, 136, 355
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	229, 573
HinfI	GANTC	4 cut(s)	107, 166, 252, 428
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	5 cut(s)	20, 171, 251, 322, 343
Hpy188III	TCNNGA	1 cut(s)	432
Hpy99I	CGWCG	1 cut(s)	270
HpyAV	CCTTC	3 cut(s)	326, 496, 576
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 144, 153
HpyF3I	CTNAG	2 cut(s)	170, 516
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	229, 573
Kzo9I	GATC	3 cut(s)	27, 378, 538
LmnI	GCTCC	2 cut(s)	194, 448
LpnPI	CCDG	7 cut(s)	70, 183, 292, 304, 367, 373, 381
Lsp1109I	GCAGC	3 cut(s)	84, 143, 217
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	2 cut(s)	258, 527
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	3 cut(s)	29, 380, 540
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	3 cut(s)	27, 378, 538
MluCI	AATT	3 cut(s)	232, 261, 337
MnlI	CCTC	5 cut(s)	81, 165, 368, 499, 501
MseI	TTAA	3 cut(s)	449, 486, 557
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	291, 292
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	3 cut(s)	21, 144, 153
NciI	CCSGG	2 cut(s)	291, 292
NdeII	GATC	3 cut(s)	27, 378, 538
NlaIII	CATG	2 cut(s)	229, 573
NlaIV	GGNNCC	1 cut(s)	289
NmeAIII	GCCGAG	2 cut(s)	17, 114
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	420
PaqCI	CACCTGC	1 cut(s)	378
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	4 cut(s)	107, 166, 252, 428
PkrI	GCNGC	5 cut(s)	99, 102, 132, 158, 207
PscI	ACATGT	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	449, 486, 557
SatI	GCNGC	5 cut(s)	98, 101, 131, 157, 206
Sau3AI	GATC	3 cut(s)	27, 378, 538
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	291, 292
SetI	ASST	7 cut(s)	187, 199, 210, 386, 392, 510, 568
SfaNI	GCATC	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	420
SmaI	CCCGGG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SpeI	ACTAGT	1 cut(s)	526
Sse9I	AATT	3 cut(s)	232, 261, 337
SsiI	CCGC	3 cut(s)	100, 116, 131
SspMI	CTAG	2 cut(s)	258, 527
StyD4I	CCNGG	2 cut(s)	289, 290
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	4 cut(s)	26, 215, 230, 420
TasI	AATT	3 cut(s)	232, 261, 337
TauI	GCSGC	2 cut(s)	103, 133
TfiI	GAWTC	4 cut(s)	107, 166, 252, 428
Tru1I	TTAA	3 cut(s)	449, 486, 557
Tru9I	TTAA	3 cut(s)	449, 486, 557
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	3 cut(s)	97, 156, 205
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	445, 558
TspMI	CCCGGG	1 cut(s)	290
XapI	RAATTY	3 cut(s)	232, 261, 337
XceI	RCATGY	1 cut(s)	229
XmaI	CCCGGG	1 cut(s)	290
XspI	CTAG	2 cut(s)	258, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.