Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002584

Physical Location & Seq

Genomic Coordinates Forward (+)

5569841 .. 5570829

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCAGGTTTCAGTAGTCAAGCTCGAGTGCCGTACTGTTGCCTACCATGAGTCAGGGCATGCTGTTACTGGCTGGTTCTTAGAACACGCAGAACCGTTGTTGAAAGTGACCATTGTTCCTCGAGCTACTGCAGCACTTGGGTTTGCCCAGTATGTTCCAAATGAAAACCTCCTCATGACCAAGGAGCAGCTTTTTGATATGACCTGCATGACCCTCGGTGGTAGAGCAGCTGAACAGGTTATGTTGGGAAAAATATCTACGGGAGCCCAAAACGATCTGGAGAAAGTGACAAAGATGACATCCGCCCAAATTGCAGTGTATGGTTTCAGTGACAAGGTGGGTCTCCTGTCTTTCCCTCAAAGGGAAGAATCATTTGAGATGTCAAAGCCCTACAGCAGCAAGACTGGAGCCCTTATTGACAGTGAAGTGCGTGAATGGGTGGGTAAGGCGTATGCACGCACAGTTGAACTCATAGAGGAACACAAAGAGCAAGTAGCTCAAATTGCAGAACTGTTGCTTGAAAAGGAAGTTCTTCACCATGATGACCTGCTCAAGGCGTTGGGGGGAAGACCACATAAACCTGCTGAAGTGACCAACTACGATAGATTTAAGGAAGGTTTCGAAGGGAAAGGTGATGAGAAAACAGTGGAGACCGCTGGTTGGGGCCGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

225

Amino Acids

24.87

Weight (kDa)

5.57

Isoelectric Point (pI)

24.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	9 - 183	8.4e-63	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07510 AT2G29080
fragaria_vesca	FvH4_3g36790 FvH4_3g36790 FvH4_3g36790 FvH4_6g13480 FvH4_6g13480 FvH4_6g13480
malus_domestica	MD03G1088300.v1.1 MD03G1088400.v1.1 MD04G1130900.v1.1 MD11G1097400.v1.1 MD12G1144000.v1.1
prunus_persica	Prupe.6G072600_v2.0.a1 Prupe.6G257400_v2.0.a1 Prupe.6G257400_v2.0.a1
pyrus_communis	pycom03g06980 pycom03g07000 pycom04g11920 pycom11g08210 pycom12g13860
rosa_chinensis	RchiOBHm_Chr3g0466351 RchiOBHm_Chr5g0065851
rosa_laevigata	RLG00000024582 RLG00000035821
rosa_multiflora	Rmu_sc0003480.1_g000012 Rmu_sc0042868.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015310 Rroxscaffold_6G00414550
rosa_rugosa	Rorug03G0081200 Rorug05G0374100 Rorug05G0374200 Rorug05G0374300
rosa_samantha	Rh3BG148900 Rh3DG149600 Rh5BG449200 Rh5CG471400 Rh5DG462800
rosa_wichuraiana	Rw3G012050 Rw5G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	212, 555, 589
AciI	CCGC	2 cut(s)	303, 654
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	3 cut(s)	361, 553, 660
AgsI	TTSAA	3 cut(s)	103, 467, 521
AluBI	AGCT	5 cut(s)	22, 125, 190, 230, 497
AluI	AGCT	5 cut(s)	22, 125, 190, 230, 497
Alw26I	GTCTC	2 cut(s)	347, 644
Ama87I	CYCGRG	2 cut(s)	23, 120
AoxI	GGCC	1 cut(s)	664
ApeKI	GCWGC	4 cut(s)	131, 187, 227, 396
Asp700I	GAANNNNTTC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	664
AsuHPI	GGTGA	2 cut(s)	527, 644
AsuII	TTCGAA	1 cut(s)	621
AvaI	CYCGRG	2 cut(s)	23, 120
BanII	GRGCYC	2 cut(s)	268, 412
BbsI	GAAGAC	1 cut(s)	574
BbvI	GCAGC	4 cut(s)	143, 199, 239, 408
BceAI	ACGGC	1 cut(s)	15
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BcoDI	GTCTC	2 cut(s)	347, 644
BfmI	CTRYAG	2 cut(s)	129, 391
BfuAI	ACCTGC	3 cut(s)	212, 555, 589
BisI	GCNGC	4 cut(s)	132, 188, 228, 397
BlsI	GCNGC	4 cut(s)	133, 189, 229, 398
BmeT110I	CYCGRG	2 cut(s)	23, 120
BmgT120I	GGNCC	1 cut(s)	664
BmiI	GGNNCC	3 cut(s)	265, 409, 665
BmrI	ACTGGG	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	574
BpmI	CTGGAG	2 cut(s)	299, 426
Bpu14I	TTCGAA	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	536
BsaI	GGTCTC	2 cut(s)	347, 644
BsaJI	CCNNGG	3 cut(s)	180, 214, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 553, 660
Bse1I	ACTGG	3 cut(s)	73, 148, 409
BseDI	CCNNGG	3 cut(s)	180, 214, 667
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	3 cut(s)	361, 553, 660
BseNI	ACTGG	3 cut(s)	73, 148, 409
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	4 cut(s)	143, 199, 239, 408
BshFI	GGCC	1 cut(s)	666
BsiHKCI	CYCGRG	2 cut(s)	23, 120
BslI	CCNNNNNNNGG	3 cut(s)	361, 553, 660
BsmAI	GTCTC	2 cut(s)	347, 644
BsnI	GGCC	1 cut(s)	666
Bso31I	GGTCTC	2 cut(s)	347, 644
BsoBI	CYCGRG	2 cut(s)	23, 120
Bsp119I	TTCGAA	1 cut(s)	621
Bsp1286I	GDGCHC	2 cut(s)	268, 412
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	2 cut(s)	303, 654
BspANI	GGCC	1 cut(s)	666
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	265, 409, 665
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	3 cut(s)	212, 555, 589
BspT104I	TTCGAA	1 cut(s)	621
BspTNI	GGTCTC	2 cut(s)	347, 644
BsrI	ACTGG	3 cut(s)	73, 148, 409
BssECI	CCNNGG	3 cut(s)	180, 214, 667
BssMI	GATC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	6 cut(s)	37, 96, 422, 463, 513, 646
BstBI	TTCGAA	1 cut(s)	621
BstC8I	GCNNGC	2 cut(s)	60, 457
BstDEI	CTNAG	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	1 cut(s)	299
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	2 cut(s)	347, 644
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 311, 503
BstNSI	RCATGY	1 cut(s)	62
BstSFI	CTRYAG	2 cut(s)	129, 391
BstV1I	GCAGC	4 cut(s)	143, 199, 239, 408
BstV2I	GAAGAC	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	666
BtsCI	GGATG	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	4 cut(s)	321, 334, 427, 651
BveI	ACCTGC	3 cut(s)	212, 555, 589
Cac8I	GCNNGC	2 cut(s)	60, 457
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	664
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	5 cut(s)	47, 59, 175, 208, 539
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	2 cut(s)	268, 412
Eco31I	GGTCTC	2 cut(s)	347, 644
Eco57I	CTGAAG	1 cut(s)	606
Eco88I	CYCGRG	2 cut(s)	23, 120
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	2 cut(s)	268, 412
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	5 cut(s)	50, 62, 178, 211, 542
FatI	CATG	5 cut(s)	46, 58, 174, 207, 538
Fnu4HI	GCNGC	4 cut(s)	132, 188, 228, 397
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	2 cut(s)	268, 412
Fsp4HI	GCNGC	4 cut(s)	132, 188, 228, 397
GluI	GCNGC	4 cut(s)	132, 188, 228, 397
GsuI	CTGGAG	2 cut(s)	299, 426
HaeIII	GGCC	1 cut(s)	666
Hin1II	CATG	5 cut(s)	50, 62, 178, 211, 542
HinfI	GANTC	2 cut(s)	50, 368
HphI	GGTGA	2 cut(s)	527, 644
Hpy188III	TCNNGA	2 cut(s)	175, 278
HpyAV	CCTTC	2 cut(s)	608, 617
HpyCH4III	ACNGT	6 cut(s)	37, 96, 422, 463, 513, 646
HpyCH4V	TGCA	6 cut(s)	4, 131, 207, 314, 455, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 311, 503
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	5 cut(s)	50, 62, 178, 211, 542
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	3 cut(s)	184, 263, 407
Lsp1109I	GCAGC	4 cut(s)	143, 199, 239, 408
MaeIII	GTNAC	5 cut(s)	64, 106, 286, 329, 589
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	3 cut(s)	377, 524, 579
MhlI	GDGCHC	2 cut(s)	268, 412
MluCI	AATT	2 cut(s)	309, 501
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	7 cut(s)	129, 179, 182, 224, 366, 469, 662
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	540
MspA1I	CMGCKG	2 cut(s)	230, 656
MwoI	GCNNNNNNNGC	3 cut(s)	131, 311, 503
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	5 cut(s)	50, 62, 178, 211, 542
NlaIV	GGNNCC	3 cut(s)	265, 409, 665
NmuCI	GTSAC	4 cut(s)	106, 286, 329, 589
NspI	RCATGY	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	621
PaeI	GCATGC	1 cut(s)	62
PaeR7I	CTCGAG	2 cut(s)	23, 120
PagI	TCATGA	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	133, 189, 229, 398
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	265, 409, 665
PspPI	GGNCC	1 cut(s)	664
PspXI	VCTCGAGB	2 cut(s)	23, 120
PstI	CTGCAG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	4 cut(s)	132, 188, 228, 397
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	664
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	2 cut(s)	268, 412
SfcI	CTRYAG	2 cut(s)	129, 391
Sfr274I	CTCGAG	2 cut(s)	23, 120
SfuI	TTCGAA	1 cut(s)	621
SlaI	CTCGAG	2 cut(s)	23, 120
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	3 cut(s)	23, 120, 551
SmoI	CTYRAG	3 cut(s)	23, 120, 551
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	2 cut(s)	309, 501
SsiI	CCGC	2 cut(s)	303, 654
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	6 cut(s)	37, 96, 422, 463, 513, 646
TaqI	TCGA	3 cut(s)	24, 121, 621
TasI	AATT	2 cut(s)	309, 501
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	4 cut(s)	321, 334, 427, 651
TseFI	GTSAC	4 cut(s)	106, 286, 329, 589
TseI	GCWGC	4 cut(s)	131, 187, 227, 396
Tsp45I	GTSAC	4 cut(s)	106, 286, 329, 589
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	4 cut(s)	321, 334, 427, 651
XagI	CCTNNNNNAGG	1 cut(s)	551
XceI	RCATGY	1 cut(s)	62
XhoI	CTCGAG	2 cut(s)	23, 120
XmnI	GAANNNNTTC	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.