Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003480.1

Orthogroup ID

OG0002584

Physical Location & Seq

Genomic Coordinates Reverse (-)

47113 .. 51880

Gene Structure 4768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003480.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

atgattttctccagcggcggacgcctcctctctcgctcggctcgttccgccttccaaaagagcgtaatttgggttaattataatggaagagctgcgcttaggcacgaaccgccgacgccgcttggcggcaatgcgggcatttccggcgggttagggcttctgagggggtatttaacttatagtggagctgggaagcagctcgtttcgaatacctacatgtctaatttgaaatcggctcttgcaaaccctaggattcgtcgcctgttctccagcgaaaggcctgggaagaaaaattacgagaattattatccgaaagataagaaggaaattccgaaagggaatgatcagaaatccgggtcgaaagaaggtgctggtgatcaggggaatacccagggaaatttttcaaagcagattcaagatttaatcactcctttattgttcatgggatttattttcatatcgttattcctcactcctcagaaacataagcagataagtttccaagaatttaaaaacaagctacttgaacctgggttggtggatcacattgaagtggcaaataaatcagttgcaaaagtgtttgtgagaagctccccacgcactcaagatgtgagtagtgatgattttgtcaagggacctgaaaacagtactccttccggaggaaatttgagccagtacaagtactattttaacattgggagtgttgactcttttgaggaaaaattggaggaagcccaagaagctttagggattgaccgtcatgattttgttcctgtaatttatgtagcgcaaatcaattggttccaagagctgatgaagtatgcgccaacaatgttgcttttgggagctctttggttcacagggcgaaaaatgcctggtattggtggcacaggtggaaaagttgggagaggaatattcaatataggaaaagcacagataacaaaagtggataagaatgccaaaaacaaggttttctttaaagatgtagctggctgtgatgaggctaagcaagaaattatggaatttgtgcactttctcaagaaccctaagaaatatgaggaattgggagcaaaaattccaaaaggtgcccttcttgttggccctcccggaactggaaaaactcttattgcaaaggcaactgcaggtgaatctggggtgccatttctatctatatctggttcggattttatggaaatgtttgttggtgttgggccatcaagggttcggagtttatttcaagaggcaagacaatgtgcacctagtataatatttattgatgagattgatgcaattggccgggcaagagggcgtggaggcttttcaggtggcaatgatgagcgagaaagtactctcaatcaattgcttgtagaaatggatggatttggaacaactgctggagttgttgtacttgctgggaccaataggcctgatattctggataaagcactcttgaggcctggtcggtttgaccgtcaaattactattgataaaccagacattaaaggtcgtaaccagatttttcagatatatctgaaaaagctcaaattagatcgcgaaccatcccattactcagagagacttgctgctctgactcctggattcgctggagcagatatagcaaatgtctgcaatgaagctgccttgattgctgcaaggaatgagagtgcaaagatcacaatgaaacattttgaggcagctatcgatcgggtaattggcggtcttgaaaagaagaacaaggtaataagcaagctggaaagacggactgttgcttaccatgaagctggccatgctgttgctggttggttcttagaacatgcagaacctttacttaaagtaactattgttccacgtggcactgcagcactggggtttgctcagtatgttcccaatgaaaatcttcttatgaccaaagagcagctttttgatatgacatgcatgacccttggtggtcgagcttctgaagaggttttgttggggaagatttcaactggagcacagaacgacttggagaaagtgaccaaaatgacatatgcccaagttgcagtatatggcttcagcgacaaagtgggccttctttcttttcctcaaagggatgaatttgagatgacgaagccttacagtagtaagactggtgcaataattgacagtgaagttagagaatgggttgccaaagcatatacccgcactattgagctgatagaggagcacaaggagcacgtaggacagattgcagagctgttactggaaaaggaggtcctacaccaagaagactttattcgagtcttgggagagcgcccatggaagtcggaggagcccacaaattatgatcgattcaagcaagggttccaagaagaagaagataaggaggctaaagagacaaccactgagggtaaggatgtgaaggatggtcggtcaccacctcttcaaccagatgctgtgcctgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

815

Amino Acids

90.03

Weight (kDa)

8.81

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07510 AT2G29080
fragaria_vesca	FvH4_3g36790 FvH4_3g36790 FvH4_3g36790 FvH4_6g13480 FvH4_6g13480 FvH4_6g13480
malus_domestica	MD03G1088300.v1.1 MD03G1088400.v1.1 MD04G1130900.v1.1 MD11G1097400.v1.1 MD12G1144000.v1.1
prunus_persica	Prupe.6G072600_v2.0.a1 Prupe.6G257400_v2.0.a1 Prupe.6G257400_v2.0.a1
pyrus_communis	pycom03g06980 pycom03g07000 pycom04g11920 pycom11g08210 pycom12g13860
rosa_chinensis	RchiOBHm_Chr3g0466351 RchiOBHm_Chr5g0065851
rosa_laevigata	RLG00000024582 RLG00000035821
rosa_multiflora	Rmu_sc0003480.1_g000012 Rmu_sc0042868.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015310 Rroxscaffold_6G00414550
rosa_rugosa	Rorug03G0081200 Rorug05G0374100 Rorug05G0374200 Rorug05G0374300
rosa_samantha	Rh3BG148900 Rh3DG149600 Rh5BG449200 Rh5CG471400 Rh5DG462800
rosa_wichuraiana	Rw3G012050 Rw5G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AarI	CACCTGC	1 cut(s)	1133
Acc36I	ACCTGC	1 cut(s)	1133
AccB1I	GGYRCC	2 cut(s)	1085, 1156
AccII	CGCG	1 cut(s)	1554
AccIII	TCCGGA	1 cut(s)	656
AclWI	GGATC	1 cut(s)	549
AcoI	YGGCCR	2 cut(s)	1294, 1783
AcsI	RAATTY	7 cut(s)	327, 397, 506, 664, 1022, 1074, 2096
AcuI	CTGAAG	2 cut(s)	1980, 2038
AcvI	CACGTG	1 cut(s)	1850
AcyI	GRCGYC	2 cut(s)	22, 116
AfaI	GTAC	5 cut(s)	649, 677, 683, 1348, 1407
AfiI	CCNNNNNNNGG	5 cut(s)	125, 276, 659, 881, 1112
AflIII	ACRYGT	1 cut(s)	216
AjnI	CCWGG	6 cut(s)	280, 390, 529, 874, 1456, 1594
AjuI	GAANNNNNNNTTGG	2 cut(s)	1185, 1217
Alw21I	GWGCWC	6 cut(s)	850, 1032, 1258, 1996, 2208, 2217
Alw26I	GTCTC	2 cut(s)	1570, 2369
Alw44I	GTGCAC	2 cut(s)	1028, 1254
AlwI	GGATC	1 cut(s)	549
AlwNI	CAGNNNCTG	1 cut(s)	2435
Aor13HI	TCCGGA	1 cut(s)	656
AoxI	GGCC	8 cut(s)	278, 1099, 1211, 1294, 1424, 1454, 1783, 2068
ApaLI	GTGCAC	2 cut(s)	1028, 1254
ApeKI	GCWGC	8 cut(s)	92, 196, 1583, 1637, 1649, 1694, 1859, 1915
ApoI	RAATTY	7 cut(s)	327, 397, 506, 664, 1022, 1074, 2096
Asp700I	GAANNNNTTC	2 cut(s)	400, 1896
AspA2I	CCTAGG	1 cut(s)	248
AspLEI	GCGC	4 cut(s)	97, 790, 826, 2295
AspS9I	GGNCC	6 cut(s)	635, 1100, 1211, 1416, 2068, 2254
AsuC2I	CCSGG	3 cut(s)	355, 1107, 1298
AsuHPI	GGTGA	3 cut(s)	386, 1157, 2406
AsuII	TTCGAA	1 cut(s)	206
AvaII	GGWCC	3 cut(s)	635, 1416, 2254
AvrII	CCTAGG	1 cut(s)	248
BaeGI	GKGCMC	3 cut(s)	1032, 1090, 1258
BalI	TGGCCA	1 cut(s)	1785
BanI	GGYRCC	2 cut(s)	1085, 1156
BanII	GRGCYC	2 cut(s)	850, 2316
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbrPI	CACGTG	1 cut(s)	1850
BbsI	GAAGAC	1 cut(s)	2274
Bbv12I	GWGCWC	6 cut(s)	850, 1032, 1258, 1996, 2208, 2217
BbvI	GCAGC	8 cut(s)	79, 208, 1570, 1624, 1636, 1706, 1871, 1927
BccI	CCATC	4 cut(s)	1222, 1370, 1567, 2399
BciT130I	CCWGG	6 cut(s)	282, 392, 531, 876, 1458, 1596
BclI	TGATCA	2 cut(s)	343, 376
BcnI	CCSGG	3 cut(s)	355, 1107, 1298
BcoDI	GTCTC	2 cut(s)	1570, 2369
BfaI	CTAG	2 cut(s)	249, 1260
BfmI	CTRYAG	2 cut(s)	1140, 1857
BfoI	RGCGCY	1 cut(s)	2296
BfuAI	ACCTGC	1 cut(s)	1133
BlnI	CCTAGG	1 cut(s)	248
BlpI	GCTNAGC	1 cut(s)	1005
BmcAI	AGTACT	3 cut(s)	649, 683, 1348
Bme1390I	CCNGG	9 cut(s)	282, 355, 392, 531, 876, 1107, 1298, 1458, 1596
Bme18I	GGWCC	3 cut(s)	635, 1416, 2254
BmgT120I	GGNCC	6 cut(s)	635, 1100, 1211, 1416, 2068, 2254
BmiI	GGNNCC	7 cut(s)	636, 803, 1087, 1158, 1417, 2313, 2345
BmrFI	CCNGG	9 cut(s)	282, 355, 392, 531, 876, 1107, 1298, 1458, 1596
BmrI	ACTGGG	1 cut(s)	1874
BmsI	GCATC	2 cut(s)	1276, 2422
BmuI	ACTGGG	1 cut(s)	1874
BpiI	GAAGAC	1 cut(s)	2274
BpmI	CTGGAG	4 cut(s)	253, 1416, 1626, 2010
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	1005
Bpu14I	TTCGAA	1 cut(s)	206
BpuEI	CTTGAG	3 cut(s)	588, 1022, 1471
BpuMI	CCSGG	3 cut(s)	355, 1107, 1298
Bsa29I	ATCGAT	2 cut(s)	1701, 2329
BsaAI	YACGTR	2 cut(s)	1850, 2218
BsaHI	GRCGYC	2 cut(s)	22, 116
BsaJI	CCNNGG	7 cut(s)	248, 281, 390, 391, 530, 1942, 2297
BsaWI	WCCGGW	1 cut(s)	656
BsaXI	ACNNNNNCTCC	2 cut(s)	1389, 1419
Bsc4I	CCNNNNNNNGG	5 cut(s)	125, 276, 659, 881, 1112
Bse1I	ACTGG	6 cut(s)	673, 1117, 1869, 1993, 2134, 2247
Bse3DI	GCAATG	3 cut(s)	136, 1336, 1636
BseAI	TCCGGA	1 cut(s)	656
BseBI	CCWGG	6 cut(s)	282, 392, 531, 876, 1458, 1596
BseCI	ATCGAT	2 cut(s)	1701, 2329
BseDI	CCNNGG	7 cut(s)	248, 281, 390, 391, 530, 1942, 2297
BseGI	GGATG	5 cut(s)	1381, 1559, 2098, 2401, 2410
BseLI	CCNNNNNNNGG	5 cut(s)	125, 276, 659, 881, 1112
BseMI	GCAATG	3 cut(s)	136, 1336, 1636
BseMII	CTCAG	5 cut(s)	152, 491, 1584, 1889, 2376
BseNI	ACTGG	6 cut(s)	673, 1117, 1869, 1993, 2134, 2247
BseRI	GAGGAG	4 cut(s)	17, 465, 2216, 2324
BseSI	GKGCMC	3 cut(s)	1032, 1090, 1258
BseXI	GCAGC	8 cut(s)	79, 208, 1570, 1624, 1636, 1706, 1871, 1927
BseYI	CCCAGC	2 cut(s)	188, 1412
Bsh1236I	CGCG	1 cut(s)	1554
Bsh1285I	CGRYCG	1 cut(s)	1705
BshFI	GGCC	8 cut(s)	280, 1101, 1213, 1296, 1426, 1456, 1785, 2070
BshNI	GGYRCC	2 cut(s)	1085, 1156
BshVI	ATCGAT	2 cut(s)	1701, 2329
BsiEI	CGRYCG	1 cut(s)	1705
BsiHKAI	GWGCWC	6 cut(s)	850, 1032, 1258, 1996, 2208, 2217
BsiSI	CCGG	5 cut(s)	144, 354, 657, 1107, 1297
BslFI	GGGAC	2 cut(s)	648, 1429
BslI	CCNNNNNNNGG	5 cut(s)	125, 276, 659, 881, 1112
BsmAI	GTCTC	2 cut(s)	1570, 2369
BsmFI	GGGAC	2 cut(s)	648, 1429
BsmI	GAATGC	1 cut(s)	961
BsnI	GGCC	8 cut(s)	280, 1101, 1213, 1296, 1426, 1456, 1785, 2070
Bsp119I	TTCGAA	1 cut(s)	206
Bsp1286I	GDGCHC	8 cut(s)	850, 1032, 1090, 1258, 1996, 2208, 2217, 2316
Bsp13I	TCCGGA	1 cut(s)	656
Bsp143I	GATC	7 cut(s)	343, 376, 541, 1549, 1671, 1702, 2326
Bsp1720I	GCTNAGC	1 cut(s)	1005
Bsp19I	CCATGG	1 cut(s)	2297
Bsp68I	TCGCGA	1 cut(s)	1554
BspANI	GGCC	8 cut(s)	280, 1101, 1213, 1296, 1426, 1456, 1785, 2070
BspCNI	CTCAG	5 cut(s)	153, 490, 1583, 1888, 2377
BspDI	ATCGAT	2 cut(s)	1701, 2329
BspEI	TCCGGA	1 cut(s)	656
BspFNI	CGCG	1 cut(s)	1554
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	7 cut(s)	636, 803, 1087, 1158, 1417, 2313, 2345
BspMAI	CTGCAG	2 cut(s)	1144, 1861
BspMI	ACCTGC	1 cut(s)	1133
BspPI	GGATC	1 cut(s)	549
BspQI	GCTCTTC	1 cut(s)	82
BspT104I	TTCGAA	1 cut(s)	206
BspT107I	GGYRCC	2 cut(s)	1085, 1156
BsrDI	GCAATG	3 cut(s)	136, 1336, 1636
BsrI	ACTGG	6 cut(s)	673, 1117, 1869, 1993, 2134, 2247
BssECI	CCNNGG	7 cut(s)	248, 281, 390, 391, 530, 1942, 2297
BssMI	GATC	7 cut(s)	343, 376, 541, 1549, 1671, 1702, 2326
BssNI	GRCGYC	2 cut(s)	22, 116
BssT1I	CCWWGG	3 cut(s)	248, 1942, 2297
Bst2UI	CCWGG	6 cut(s)	282, 392, 531, 876, 1458, 1596
Bst4CI	ACNGT	6 cut(s)	647, 758, 1472, 1765, 2120, 2147
Bst6I	CTCTTC	3 cut(s)	82, 1956, 2427
BstACI	GRCGYC	2 cut(s)	22, 116
BstBAI	YACGTR	2 cut(s)	1850, 2218
BstBI	TTCGAA	1 cut(s)	206
BstC8I	GCNNGC	5 cut(s)	136, 991, 1748, 1783, 2442
BstDEI	CTNAG	9 cut(s)	98, 161, 477, 1005, 1047, 1570, 1807, 1875, 2385
BstDSI	CCRYGG	1 cut(s)	2297
BstEII	GGTNACC	1 cut(s)	2412
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	5 cut(s)	1381, 1559, 2098, 2401, 2410
BstFNI	CGCG	1 cut(s)	1554
BstH2I	RGCGCY	1 cut(s)	2296
BstHHI	GCGC	4 cut(s)	97, 790, 826, 2295
BstKTI	GATC	7 cut(s)	346, 379, 544, 1552, 1674, 1705, 2329
BstMAI	GTCTC	2 cut(s)	1570, 2369
BstMBI	GATC	7 cut(s)	343, 376, 541, 1549, 1671, 1702, 2326
BstMCI	CGRYCG	1 cut(s)	1705
BstNI	CCWGG	6 cut(s)	282, 392, 531, 876, 1458, 1596
BstNSI	RCATGY	3 cut(s)	220, 1817, 1935
BstPI	GGTNACC	1 cut(s)	2412
BstSCI	CCNGG	9 cut(s)	280, 353, 390, 529, 874, 1105, 1296, 1456, 1594
BstSFI	CTRYAG	2 cut(s)	1140, 1857
BstSLI	GKGCMC	3 cut(s)	1032, 1090, 1258
BstUI	CGCG	1 cut(s)	1554
BstV1I	GCAGC	8 cut(s)	79, 208, 1570, 1624, 1636, 1706, 1871, 1927
BstV2I	GAAGAC	1 cut(s)	2274
BstXI	CCANNNNNNTGG	1 cut(s)	1781
Bsu15I	ATCGAT	2 cut(s)	1701, 2329
BsuRI	GGCC	8 cut(s)	280, 1101, 1213, 1296, 1426, 1456, 1785, 2070
BsuTUI	ATCGAT	2 cut(s)	1701, 2329
BtgI	CCRYGG	1 cut(s)	2297
BtsCI	GGATG	5 cut(s)	1381, 1559, 2098, 2401, 2410
BtsI	GCAGTG	1 cut(s)	1854
BtsIMutI	CAGTG	4 cut(s)	1854, 1862, 2152, 2382
BtuMI	TCGCGA	1 cut(s)	1554
BveI	ACCTGC	1 cut(s)	1133
Cac8I	GCNNGC	5 cut(s)	136, 991, 1748, 1783, 2442
CaiI	CAGNNNCTG	1 cut(s)	2435
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	4 cut(s)	97, 790, 826, 2295
Cfr13I	GGNCC	6 cut(s)	635, 1100, 1211, 1416, 2068, 2254
ClaI	ATCGAT	2 cut(s)	1701, 2329
CseI	GACGC	2 cut(s)	30, 124
Csp6I	GTAC	5 cut(s)	648, 676, 682, 1347, 1406
CviAII	CATG	9 cut(s)	217, 442, 761, 1775, 1787, 1814, 1932, 1936, 2298
CviQI	GTAC	5 cut(s)	648, 676, 682, 1347, 1406
DdeI	CTNAG	9 cut(s)	98, 161, 477, 1005, 1047, 1570, 1807, 1875, 2385
DpnI	GATC	7 cut(s)	345, 378, 543, 1551, 1673, 1704, 2328
DpnII	GATC	7 cut(s)	343, 376, 541, 1549, 1671, 1702, 2326
DraI	TTTAAA	2 cut(s)	511, 979
EaeI	YGGCCR	2 cut(s)	1294, 1783
Eam1104I	CTCTTC	3 cut(s)	82, 1956, 2427
EarI	CTCTTC	3 cut(s)	82, 1956, 2427
EciI	GGCGGA	2 cut(s)	33, 37
Ecl136II	GAGCTC	1 cut(s)	848
Eco130I	CCWWGG	3 cut(s)	248, 1942, 2297
Eco147I	AGGCCT	3 cut(s)	280, 1426, 1456
Eco24I	GRGCYC	2 cut(s)	850, 2316
Eco47I	GGWCC	3 cut(s)	635, 1416, 2254
Eco53kI	GAGCTC	1 cut(s)	848
Eco57I	CTGAAG	2 cut(s)	1980, 2038
Eco72I	CACGTG	1 cut(s)	1850
Eco91I	GGTNACC	1 cut(s)	2412
EcoICRI	GAGCTC	1 cut(s)	848
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoO109I	RGGNCCY	2 cut(s)	635, 2254
EcoO65I	GGTNACC	1 cut(s)	2412
EcoRII	CCWGG	6 cut(s)	280, 390, 529, 874, 1456, 1594
EcoT14I	CCWWGG	3 cut(s)	248, 1942, 2297
EcoT22I	ATGCAT	1 cut(s)	1937
EcoT38I	GRGCYC	2 cut(s)	850, 2316
ErhI	CCWWGG	3 cut(s)	248, 1942, 2297
FaeI	CATG	9 cut(s)	220, 445, 764, 1778, 1790, 1817, 1935, 1939, 2301
FalI	AAGNNNNNCTT	8 cut(s)	959, 991, 1074, 1106, 1902, 1934, 2055, 2087
FaqI	GGGAC	2 cut(s)	648, 1429
FatI	CATG	9 cut(s)	216, 441, 760, 1774, 1786, 1813, 1931, 1935, 2297
FauI	CCCGC	3 cut(s)	127, 140, 2189
FauNDI	CATATG	1 cut(s)	2029
FbaI	TGATCA	2 cut(s)	343, 376
FokI	GGATG	5 cut(s)	1388, 1546, 2105, 2408, 2417
FriOI	GRGCYC	2 cut(s)	850, 2316
FspBI	CTAG	2 cut(s)	249, 1260
GlaI	GCGC	4 cut(s)	96, 789, 825, 2294
GsaI	CCCAGC	2 cut(s)	192, 1416
GsuI	CTGGAG	4 cut(s)	253, 1416, 1626, 2010
HaeII	RGCGCY	1 cut(s)	2296
HaeIII	GGCC	8 cut(s)	280, 1101, 1213, 1296, 1426, 1456, 1785, 2070
HapII	CCGG	5 cut(s)	144, 354, 657, 1107, 1297
HgaI	GACGC	2 cut(s)	30, 124
HhaI	GCGC	4 cut(s)	97, 790, 826, 2295
Hin1I	GRCGYC	2 cut(s)	22, 116
Hin1II	CATG	9 cut(s)	220, 445, 764, 1778, 1790, 1817, 1935, 1939, 2301
Hin6I	GCGC	4 cut(s)	95, 788, 824, 2293
HinP1I	GCGC	4 cut(s)	95, 788, 824, 2293
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	8 cut(s)	253, 412, 707, 1148, 1591, 1599, 2280, 2331
HpaII	CCGG	5 cut(s)	144, 354, 657, 1107, 1297
HphI	GGTGA	3 cut(s)	386, 1157, 2406
Hpy166II	GTNNAC	4 cut(s)	706, 858, 1030, 1256
Hpy8I	GTNNAC	4 cut(s)	706, 858, 1030, 1256
Hpy99I	CGWCG	2 cut(s)	118, 261
HpyAV	CCTTC	7 cut(s)	61, 316, 359, 663, 1100, 2081, 2395
HpyCH4III	ACNGT	6 cut(s)	647, 758, 1472, 1765, 2120, 2147
HpyCH4IV	ACGT	2 cut(s)	1849, 2217
HpyF3I	CTNAG	9 cut(s)	98, 161, 477, 1005, 1047, 1570, 1807, 1875, 2385
HpySE526I	ACGT	2 cut(s)	1849, 2217
Hsp92I	GRCGYC	2 cut(s)	22, 116
Hsp92II	CATG	9 cut(s)	220, 445, 764, 1778, 1790, 1817, 1935, 1939, 2301
HspAI	GCGC	4 cut(s)	95, 788, 824, 2293
Kpn2I	TCCGGA	1 cut(s)	656
Ksp22I	TGATCA	2 cut(s)	343, 376
Kzo9I	GATC	7 cut(s)	343, 376, 541, 1549, 1671, 1702, 2326
LguI	GCTCTTC	1 cut(s)	82
LmnI	GCTCC	9 cut(s)	185, 596, 845, 1067, 1607, 1991, 2203, 2212, 2311
Lsp1109I	GCAGC	8 cut(s)	79, 208, 1570, 1624, 1636, 1706, 1871, 1927
LweI	GCATC	2 cut(s)	1276, 2422
MaeI	CTAG	2 cut(s)	249, 1260
MaeII	ACGT	2 cut(s)	1849, 2217
MaeIII	GTNAC	5 cut(s)	1508, 1834, 2014, 2238, 2412
MalI	GATC	7 cut(s)	345, 378, 543, 1551, 1673, 1704, 2328
MboI	GATC	7 cut(s)	343, 376, 541, 1549, 1671, 1702, 2326
MfeI	CAATTG	3 cut(s)	796, 1290, 1358
MhlI	GDGCHC	8 cut(s)	850, 1032, 1090, 1258, 1996, 2208, 2217, 2316
MlsI	TGGCCA	1 cut(s)	1785
MluNI	TGGCCA	1 cut(s)	1785
MlyI	GAGTC	3 cut(s)	701, 1585, 2289
MmeI	TCCRAC	1 cut(s)	2286
Mox20I	TGGCCA	1 cut(s)	1785
Mph1103I	ATGCAT	1 cut(s)	1937
MroI	TCCGGA	1 cut(s)	656
MroXI	GAANNNNTTC	2 cut(s)	400, 1896
MscI	TGGCCA	1 cut(s)	1785
MseI	TTAA	8 cut(s)	75, 173, 422, 510, 690, 978, 1500, 1830
MslI	CAYNNNNRTG	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	1785
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	5 cut(s)	144, 354, 657, 1107, 1297
MspR9I	CCNGG	9 cut(s)	282, 355, 392, 531, 876, 1107, 1298, 1458, 1596
MunI	CAATTG	3 cut(s)	796, 1290, 1358
Mva1269I	GAATGC	1 cut(s)	961
MvaI	CCWGG	6 cut(s)	282, 392, 531, 876, 1458, 1596
MvnI	CGCG	1 cut(s)	1554
NciI	CCSGG	3 cut(s)	355, 1107, 1298
NcoI	CCATGG	1 cut(s)	2297
NdeI	CATATG	1 cut(s)	2029
NdeII	GATC	7 cut(s)	343, 376, 541, 1549, 1671, 1702, 2326
NlaIII	CATG	9 cut(s)	220, 445, 764, 1778, 1790, 1817, 1935, 1939, 2301
NlaIV	GGNNCC	7 cut(s)	636, 803, 1087, 1158, 1417, 2313, 2345
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	2 cut(s)	2014, 2412
NruI	TCGCGA	1 cut(s)	1554
NsiI	ATGCAT	1 cut(s)	1937
NspI	RCATGY	3 cut(s)	220, 1817, 1935
NspV	TTCGAA	1 cut(s)	206
PagI	TCATGA	1 cut(s)	760
PaqCI	CACCTGC	1 cut(s)	1133
PasI	CCCWGGG	1 cut(s)	391
PceI	AGGCCT	3 cut(s)	280, 1426, 1456
PciI	ACATGT	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	2 cut(s)	40, 1468
PctI	GAATGC	1 cut(s)	961
PdmI	GAANNNNTTC	2 cut(s)	400, 1896
PfeI	GAWTC	5 cut(s)	253, 412, 1148, 1599, 2331
PfoI	TCCNGGA	2 cut(s)	1105, 1594
Ple19I	CGATCG	1 cut(s)	1705
PleI	GAGTC	3 cut(s)	701, 1585, 2288
PmaCI	CACGTG	1 cut(s)	1850
PmlI	CACGTG	1 cut(s)	1850
PpsI	GAGTC	3 cut(s)	701, 1585, 2288
Ppu21I	YACGTR	2 cut(s)	1850, 2218
PpuMI	RGGWCCY	2 cut(s)	635, 2254
PscI	ACATGT	1 cut(s)	216
PsiI	TTATAA	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	850
Psp5II	RGGWCCY	2 cut(s)	635, 2254
Psp6I	CCWGG	6 cut(s)	280, 390, 529, 874, 1456, 1594
PspCI	CACGTG	1 cut(s)	1850
PspEI	GGTNACC	1 cut(s)	2412
PspFI	CCCAGC	2 cut(s)	188, 1412
PspGI	CCWGG	6 cut(s)	280, 390, 529, 874, 1456, 1594
PspN4I	GGNNCC	7 cut(s)	636, 803, 1087, 1158, 1417, 2313, 2345
PspPI	GGNCC	6 cut(s)	635, 1100, 1211, 1416, 2068, 2254
PspPPI	RGGWCCY	2 cut(s)	635, 2254
PsrI	GAACNNNNNNTAC	2 cut(s)	1827, 1859
PstI	CTGCAG	2 cut(s)	1144, 1861
PstNI	CAGNNNCTG	1 cut(s)	2435
PvuI	CGATCG	1 cut(s)	1705
RruI	TCGCGA	1 cut(s)	1554
RsaI	GTAC	5 cut(s)	649, 677, 683, 1348, 1407
RsaNI	GTAC	5 cut(s)	648, 676, 682, 1347, 1406
RseI	CAYNNNNRTG	1 cut(s)	551
SacI	GAGCTC	1 cut(s)	850
SapI	GCTCTTC	1 cut(s)	82
SaqAI	TTAA	8 cut(s)	75, 173, 422, 510, 690, 978, 1500, 1830
Sau3AI	GATC	7 cut(s)	343, 376, 541, 1549, 1671, 1702, 2326
Sau96I	GGNCC	6 cut(s)	635, 1100, 1211, 1416, 2068, 2254
ScaI	AGTACT	3 cut(s)	649, 683, 1348
SchI	GAGTC	3 cut(s)	701, 1585, 2289
ScrFI	CCNGG	9 cut(s)	282, 355, 392, 531, 876, 1107, 1298, 1458, 1596
SduI	GDGCHC	8 cut(s)	850, 1032, 1090, 1258, 1996, 2208, 2217, 2316
SfaNI	GCATC	2 cut(s)	1276, 2422
SfcI	CTRYAG	2 cut(s)	1140, 1857
SfuI	TTCGAA	1 cut(s)	206
SinI	GGWCC	3 cut(s)	635, 1416, 2254
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	3 cut(s)	603, 1037, 1450
SmoI	CTYRAG	3 cut(s)	603, 1037, 1450
SseBI	AGGCCT	3 cut(s)	280, 1426, 1456
SspI	AATATT	2 cut(s)	915, 1269
SspMI	CTAG	2 cut(s)	249, 1260
SstI	GAGCTC	1 cut(s)	850
StuI	AGGCCT	3 cut(s)	280, 1426, 1456
StyD4I	CCNGG	9 cut(s)	280, 353, 390, 529, 874, 1105, 1296, 1456, 1594
StyI	CCWWGG	3 cut(s)	248, 1942, 2297
TaaI	ACNGT	6 cut(s)	647, 758, 1472, 1765, 2120, 2147
TaiI	ACGT	2 cut(s)	1852, 2220
TaqI	TCGA	6 cut(s)	206, 359, 1701, 1951, 2278, 2329
TaqII	GACCGA	1 cut(s)	2400
TatI	WGTACW	5 cut(s)	647, 675, 681, 1346, 1405
TauI	GCSGC	3 cut(s)	18, 121, 129
TfiI	GAWTC	5 cut(s)	253, 412, 1148, 1599, 2331
Tru1I	TTAA	8 cut(s)	75, 173, 422, 510, 690, 978, 1500, 1830
Tru9I	TTAA	8 cut(s)	75, 173, 422, 510, 690, 978, 1500, 1830
TscAI	CASTG	4 cut(s)	1861, 1869, 2152, 2389
TseFI	GTSAC	2 cut(s)	2014, 2412
TseI	GCWGC	8 cut(s)	92, 196, 1583, 1637, 1649, 1694, 1859, 1915
Tsp45I	GTSAC	2 cut(s)	2014, 2412
TspDTI	ATGAA	8 cut(s)	430, 445, 830, 1647, 1694, 1791, 1905, 2109
TspGWI	ACGGA	1 cut(s)	1774
TspRI	CASTG	4 cut(s)	1861, 1869, 2152, 2389
VneI	GTGCAC	2 cut(s)	1028, 1254
VpaK11BI	GGWCC	3 cut(s)	635, 1416, 2254
XagI	CCTNNNNNAGG	1 cut(s)	657
XapI	RAATTY	7 cut(s)	327, 397, 506, 664, 1022, 1074, 2096
XceI	RCATGY	3 cut(s)	220, 1817, 1935
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1793
XmaJI	CCTAGG	1 cut(s)	248
XmnI	GAANNNNTTC	2 cut(s)	400, 1896
XspI	CTAG	2 cut(s)	249, 1260
ZrmI	AGTACT	3 cut(s)	649, 683, 1348
Zsp2I	ATGCAT	1 cut(s)	1937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.