Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042868.1

Orthogroup ID

OG0002584

Physical Location & Seq

Genomic Coordinates Forward (+)

9320 .. 14252

Gene Structure 4933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042868.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

atgattttttcaaggattggtcgctccttatctcgatcctctcgctccagaaatttgctttctcggaatgggcgatcggcggcggctgaagggcttttgggagtgccgggttcgggttcgtatctgggtcgggtcgatggggatttagggtttatgaggacctatattgcttcggcaataggagcgcacaagacccatgtttctgatttgagttacattctagggaaccctaaatttgtgagactgttttccagtgaagcccctaagaaaaagaattttgagaacttctatcccaaggaaaagaaagaaatcccaaaagggaatgatcagaaatccgagtccaaagaggagtcgagcaccgatgaccaggggagtttccaggaaactttcttaaagcagttccagaatttagtccctttattattgatcgggctatttttctcttcattttcttttggctccagtgaacagaaacagataagtttccaagagtttaaaaacaaacttctggaaccaggtttggtcgatcatatagttgtttctaataaatcagttgcaaaagtatttgtacgtagctcaccacgcagtcaaacaagtgatgaagttgtcgaaggaactattaatggtaccgctgctcgtggaaaagggggcgagtataagtacttcttcaatattggaagtgttgaaaattttgaggagaagttggaggatgcccaggaagctctggggatagattctcatgattatgttcccgttacatatgtctctgaaatggtttggtatcaagaattgatgaggtttgcaccaacattaatccttctgggaaccctcttgtatatggggcggagaatgcagggtggactaggcattggtggtggttctggtggccggagtggtcgtggaatattcaacataggaaaagcccatgttacaaaagtagataaaaatgcaaagaataagatctactttaaagatgttgccggttgcgatgaagcaaagcaagagatcatggaatttgtgcattttctgaagaacccaaaaaagtatgaggatttgggagctaaaattcccaaaggtgctctattggtaggtcctccaggcacaggaaagacccttctagcaaaagcaacagcaggggaatctggtgtacctttcctatctatatctggatcagatttcatggagatgtttgttggtgttggaccttccagagtgagaaacttgtttcaagaagcaaggcaatgtgctcctagtattatatttattgatgagattgatgcaattggtcgagcaagggggcgtgggggcttctcagggtccaatgatgagcgtgaaagcactctaaatcaattgctggtagaaatggatggctttggaacaactgctggagtagttgtgcttgctggaaccaataggcctgatattttggacaaagccttactaaggcctggtcgatttgatcgtcagattagcattgacaaacctgatattaaaggtcgtgatcagatatttcagatatacttgaaaaaactcaaacttgatcagcagccttcatattactctcaaaggcttgcagcgctgactccaggatttgctggagcagacattgccaatgtttgcaatgaaggtgctttaattgctgccaggaatgaaagtgcactaattacgatgcagcattttgagtcagctatagataggataattggtggtctggaaaagaagaacagggttattagcaagcttgaacgccgcactgttgcctaccatgagtcagggcatgctgtagcaggatggttcttagagcatgcagaacctttgctaaaagtgaccatcgttcctcgaggtacagcagcacttgggttcgcccagtatgttccaaatgaaaacctccttatgaccaaggagcagctttttgatatgacttgcatgacccttggtggtagagcagctgaacaggttctgttgggaaaaatttcgacgggagcccaaaatgatttggagaaggtgacaaagatgacgtatgcccaagttgcagtttatggttttagtgacaaggtgggtcttctttctttccctcaaagagatgacgggtttgagatgtcaaagccctacagcagtaagactgcagcccttattgatggtgaagtacgcgaatgggtgggcaaggcttatgcacacacacttgcactcctagaagaacacaaagatcaagtggctcaaattgcagaattgttgcttgaaaaggaagttcttcaccaagatgaccttctcagggttttgggagagagaccatacaagtcaagtgaagtgagcaattatgatagatttaagcaaggttttgaagatacagatgagaaaactgttgaggtccccgctagtgtcgggcatgaggaagacggctcttcacctctagagcctcaggttctccctacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

811

Amino Acids

89.17

Weight (kDa)

6.59

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07510 AT2G29080
fragaria_vesca	FvH4_3g36790 FvH4_3g36790 FvH4_3g36790 FvH4_6g13480 FvH4_6g13480 FvH4_6g13480
malus_domestica	MD03G1088300.v1.1 MD03G1088400.v1.1 MD04G1130900.v1.1 MD11G1097400.v1.1 MD12G1144000.v1.1
prunus_persica	Prupe.6G072600_v2.0.a1 Prupe.6G257400_v2.0.a1 Prupe.6G257400_v2.0.a1
pyrus_communis	pycom03g06980 pycom03g07000 pycom04g11920 pycom11g08210 pycom12g13860
rosa_chinensis	RchiOBHm_Chr3g0466351 RchiOBHm_Chr5g0065851
rosa_laevigata	RLG00000024582 RLG00000035821
rosa_multiflora	Rmu_sc0003480.1_g000012 Rmu_sc0042868.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015310 Rroxscaffold_6G00414550
rosa_rugosa	Rorug03G0081200 Rorug05G0374100 Rorug05G0374200 Rorug05G0374300
rosa_samantha	Rh3BG148900 Rh3DG149600 Rh5BG449200 Rh5CG471400 Rh5DG462800
rosa_wichuraiana	Rw3G012050 Rw5G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1839
Acc65I	GGTACC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	626
AccII	CGCG	1 cut(s)	2151
AciI	CCGC	6 cut(s)	80, 83, 630, 844, 1750, 2373
AclWI	GGATC	2 cut(s)	30, 1177
AcoI	YGGCCR	1 cut(s)	886
AcsI	RAATTY	8 cut(s)	52, 233, 274, 406, 688, 1013, 1065, 1971
AcuI	CTGAAG	2 cut(s)	108, 1049
AfaI	GTAC	6 cut(s)	570, 628, 662, 1149, 1846, 2148
AfeI	AGCGCT	1 cut(s)	1578
AfiI	CCNNNNNNNGG	4 cut(s)	113, 1103, 1443, 2272
AgsI	TTSAA	9 cut(s)	12, 670, 686, 910, 1229, 1525, 1745, 2240, 2342
AjnI	CCWGG	8 cut(s)	366, 378, 514, 714, 1096, 1447, 1585, 1643
AjuI	GAANNNNNNNTTGG	2 cut(s)	2250, 2282
AluBI	AGCT	7 cut(s)	576, 722, 1061, 1688, 1741, 1909, 1949
AluI	AGCT	7 cut(s)	576, 722, 1061, 1688, 1741, 1909, 1949
Alw21I	GWGCWC	4 cut(s)	359, 1081, 1249, 1660
Alw26I	GTCTC	3 cut(s)	235, 769, 2281
Alw44I	GTGCAC	1 cut(s)	1656
AlwI	GGATC	2 cut(s)	30, 1177
AlwNI	CAGNNNCTG	1 cut(s)	1960
Ama87I	CYCGRG	1 cut(s)	1839
Aor51HI	AGCGCT	1 cut(s)	1578
AoxI	GGCC	3 cut(s)	886, 1415, 1445
ApaLI	GTGCAC	1 cut(s)	1656
ApeKI	GCWGC	9 cut(s)	632, 1546, 1574, 1640, 1672, 1850, 1906, 1946, 2126
ApoI	RAATTY	8 cut(s)	52, 233, 274, 406, 688, 1013, 1065, 1971
AseI	ATTAAT	2 cut(s)	621, 812
Asp700I	GAANNNNTTC	3 cut(s)	1956, 1972, 2250
Asp718I	GGTACC	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	187, 1579
AspS9I	GGNCC	5 cut(s)	159, 1091, 1202, 1317, 2368
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	5 cut(s)	570, 2017, 2153, 2246, 2397
AvaI	CYCGRG	1 cut(s)	1839
AvaII	GGWCC	5 cut(s)	159, 1091, 1202, 1317, 2368
AxyI	CCTNAGG	1 cut(s)	2418
BaeGI	GKGCMC	1 cut(s)	1660
BanI	GGYRCC	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	1987
BarI	GAAGNNNNNNTAC	2 cut(s)	647, 679
BauI	CACGAG	1 cut(s)	636
BbsI	GAAGAC	2 cut(s)	2054, 2400
Bbv12I	GWGCWC	4 cut(s)	359, 1081, 1249, 1660
BbvI	GCAGC	9 cut(s)	619, 1558, 1586, 1627, 1684, 1862, 1918, 1958, 2138
BccI	CCATC	5 cut(s)	131, 1361, 1785, 1838, 2132
BceAI	ACGGC	1 cut(s)	2413
BciT130I	CCWGG	8 cut(s)	368, 380, 516, 716, 1098, 1449, 1587, 1645
BclI	TGATCA	3 cut(s)	325, 1501, 1540
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	235, 769, 2281
BfaI	CTAG	7 cut(s)	221, 863, 1118, 1251, 2192, 2376, 2411
BfmI	CTRYAG	4 cut(s)	1689, 1782, 2110, 2124
BfoI	RGCGCY	1 cut(s)	1580
BglII	AGATCT	1 cut(s)	960
BmcAI	AGTACT	1 cut(s)	662
Bme1390I	CCNGG	9 cut(s)	108, 368, 380, 516, 716, 1098, 1449, 1587, 1645
Bme18I	GGWCC	5 cut(s)	159, 1091, 1202, 1317, 2368
BmeT110I	CYCGRG	1 cut(s)	1839
BmgT120I	GGNCC	5 cut(s)	159, 1091, 1202, 1317, 2368
BmiI	GGNNCC	9 cut(s)	227, 460, 513, 628, 826, 1318, 1408, 1984, 2370
BmrFI	CCNGG	9 cut(s)	108, 368, 380, 516, 716, 1098, 1449, 1587, 1645
BmrI	ACTGGG	1 cut(s)	1861
BmsI	GCATC	3 cut(s)	700, 1267, 1659
BmuI	ACTGGG	1 cut(s)	1861
BpiI	GAAGAC	2 cut(s)	2054, 2400
BpmI	CTGGAG	6 cut(s)	31, 445, 1080, 1407, 1569, 1617
BpuMI	CCSGG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	2281
BsaJI	CCNNGG	5 cut(s)	294, 367, 714, 1899, 1933
BsaXI	ACNNNNNCTCC	6 cut(s)	883, 913, 1380, 1410, 2172, 2202
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 1103, 1443, 2272
Bse118I	RCCGGY	1 cut(s)	980
Bse1I	ACTGG	3 cut(s)	252, 462, 1867
Bse21I	CCTNAGG	1 cut(s)	2418
Bse3DI	GCAATG	3 cut(s)	1247, 1605, 1627
BseBI	CCWGG	8 cut(s)	368, 380, 516, 716, 1098, 1449, 1587, 1645
BseDI	CCNNGG	5 cut(s)	294, 367, 714, 1899, 1933
BseGI	GGATG	3 cut(s)	715, 1372, 1796
BseLI	CCNNNNNNNGG	4 cut(s)	113, 1103, 1443, 2272
BseMI	GCAATG	3 cut(s)	1247, 1605, 1627
BseMII	CTCAG	3 cut(s)	1326, 2284, 2432
BseNI	ACTGG	3 cut(s)	252, 462, 1867
BseRI	GAGGAG	2 cut(s)	362, 710
BseSI	GKGCMC	1 cut(s)	1660
BseXI	GCAGC	9 cut(s)	619, 1558, 1586, 1627, 1684, 1862, 1918, 1958, 2138
Bsh1236I	CGCG	1 cut(s)	2151
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	888, 1417, 1447
BshNI	GGYRCC	1 cut(s)	626
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	4 cut(s)	359, 1081, 1249, 1660
BsiHKCI	CYCGRG	1 cut(s)	1839
BsiSI	CCGG	3 cut(s)	107, 889, 981
BslFI	GGGAC	2 cut(s)	398, 2354
BslI	CCNNNNNNNGG	4 cut(s)	113, 1103, 1443, 2272
BsmAI	GTCTC	3 cut(s)	235, 769, 2281
BsmFI	GGGAC	2 cut(s)	398, 2354
BsmI	GAATGC	1 cut(s)	855
BsnI	GGCC	3 cut(s)	888, 1417, 1447
Bso31I	GGTCTC	1 cut(s)	2281
BsoBI	CYCGRG	1 cut(s)	1839
Bsp1286I	GDGCHC	5 cut(s)	359, 1081, 1249, 1660, 1987
BspACI	CCGC	6 cut(s)	80, 83, 630, 844, 1750, 2373
BspANI	GGCC	3 cut(s)	888, 1417, 1447
BspCNI	CTCAG	3 cut(s)	1325, 2283, 2431
BspFNI	CGCG	1 cut(s)	2151
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	9 cut(s)	227, 460, 513, 628, 826, 1318, 1408, 1984, 2370
BspMAI	CTGCAG	1 cut(s)	2128
BspPI	GGATC	2 cut(s)	30, 1177
BspQI	GCTCTTC	1 cut(s)	2407
BspT107I	GGYRCC	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	2281
BsrDI	GCAATG	3 cut(s)	1247, 1605, 1627
BsrFI	RCCGGY	1 cut(s)	980
BsrI	ACTGG	3 cut(s)	252, 462, 1867
BssAI	RCCGGY	1 cut(s)	980
BssECI	CCNNGG	5 cut(s)	294, 367, 714, 1899, 1933
BssSI	CACGAG	1 cut(s)	636
BssT1I	CCWWGG	3 cut(s)	294, 1899, 1933
Bst2BI	CACGAG	1 cut(s)	636
Bst2UI	CCWGG	8 cut(s)	368, 380, 516, 716, 1098, 1449, 1587, 1645
Bst4CI	ACNGT	3 cut(s)	246, 1756, 2362
Bst6I	CTCTTC	2 cut(s)	448, 2407
BstAPI	GCANNNNNTGC	1 cut(s)	1607
BstBAI	YACGTR	1 cut(s)	572
BstC8I	GCNNGC	5 cut(s)	1401, 1572, 1739, 1779, 1806
BstDEI	CTNAG	7 cut(s)	264, 1312, 1442, 1798, 2270, 2418, 2433
BstENI	CCTNNNNNAGG	1 cut(s)	1441
BstF5I	GGATG	3 cut(s)	715, 1372, 1796
BstFNI	CGCG	1 cut(s)	2151
BstH2I	RGCGCY	1 cut(s)	1580
BstHHI	GCGC	2 cut(s)	187, 1579
BstMAI	GTCTC	3 cut(s)	235, 769, 2281
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	9 cut(s)	182, 582, 719, 850, 1576, 1607, 1637, 2030, 2222
BstNI	CCWGG	8 cut(s)	368, 380, 516, 716, 1098, 1449, 1587, 1645
BstNSI	RCATGY	2 cut(s)	1781, 1808
BstSCI	CCNGG	9 cut(s)	106, 366, 378, 514, 714, 1096, 1447, 1585, 1643
BstSFI	CTRYAG	4 cut(s)	1689, 1782, 2110, 2124
BstSLI	GKGCMC	1 cut(s)	1660
BstSNI	TACGTA	1 cut(s)	572
BstUI	CGCG	1 cut(s)	2151
BstV1I	GCAGC	9 cut(s)	619, 1558, 1586, 1627, 1684, 1862, 1918, 1958, 2138
BstV2I	GAAGAC	2 cut(s)	2054, 2400
BstX2I	RGATCY	1 cut(s)	960
BstYI	RGATCY	1 cut(s)	960
Bsu36I	CCTNAGG	1 cut(s)	2418
BsuRI	GGCC	3 cut(s)	888, 1417, 1447
BtgZI	GCGATG	1 cut(s)	1002
BtsCI	GGATG	3 cut(s)	715, 1372, 1796
BtsIMutI	CAGTG	3 cut(s)	259, 469, 1752
Cac8I	GCNNGC	5 cut(s)	1401, 1572, 1739, 1779, 1806
CaiI	CAGNNNCTG	1 cut(s)	1960
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	2 cut(s)	187, 1579
Cfr10I	RCCGGY	1 cut(s)	980
Cfr13I	GGNCC	5 cut(s)	159, 1091, 1202, 1317, 2368
CsiI	ACCWGGT	1 cut(s)	514
Csp6I	GTAC	6 cut(s)	569, 627, 661, 1148, 1845, 2147
CviQI	GTAC	6 cut(s)	569, 627, 661, 1148, 1845, 2147
DdeI	CTNAG	7 cut(s)	264, 1312, 1442, 1798, 2270, 2418, 2433
DraI	TTTAAA	2 cut(s)	496, 970
EaeI	YGGCCR	1 cut(s)	886
Eam1104I	CTCTTC	2 cut(s)	448, 2407
EarI	CTCTTC	2 cut(s)	448, 2407
EciI	GGCGGA	1 cut(s)	859
Eco105I	TACGTA	1 cut(s)	572
Eco130I	CCWWGG	3 cut(s)	294, 1899, 1933
Eco147I	AGGCCT	2 cut(s)	1417, 1447
Eco24I	GRGCYC	1 cut(s)	1987
Eco31I	GGTCTC	1 cut(s)	2281
Eco47I	GGWCC	5 cut(s)	159, 1091, 1202, 1317, 2368
Eco47III	AGCGCT	1 cut(s)	1578
Eco57I	CTGAAG	2 cut(s)	108, 1049
Eco81I	CCTNAGG	1 cut(s)	2418
Eco88I	CYCGRG	1 cut(s)	1839
EcoNI	CCTNNNNNAGG	1 cut(s)	1441
EcoO109I	RGGNCCY	3 cut(s)	159, 1091, 2368
EcoRII	CCWGG	8 cut(s)	366, 378, 514, 714, 1096, 1447, 1585, 1643
EcoT14I	CCWWGG	3 cut(s)	294, 1899, 1933
EcoT38I	GRGCYC	1 cut(s)	1987
ErhI	CCWWGG	3 cut(s)	294, 1899, 1933
FalI	AAGNNNNNCTT	6 cut(s)	650, 682, 950, 982, 2250, 2282
FaqI	GGGAC	2 cut(s)	398, 2354
FauI	CCCGC	1 cut(s)	2380
FauNDI	CATATG	1 cut(s)	760
FbaI	TGATCA	3 cut(s)	325, 1501, 1540
FokI	GGATG	3 cut(s)	722, 1379, 1803
FriOI	GRGCYC	1 cut(s)	1987
FspBI	CTAG	7 cut(s)	221, 863, 1118, 1251, 2192, 2376, 2411
GlaI	GCGC	2 cut(s)	186, 1578
GsuI	CTGGAG	6 cut(s)	31, 445, 1080, 1407, 1569, 1617
HaeII	RGCGCY	1 cut(s)	1580
HaeIII	GGCC	3 cut(s)	888, 1417, 1447
HapII	CCGG	3 cut(s)	107, 889, 981
HhaI	GCGC	2 cut(s)	187, 1579
Hin6I	GCGC	2 cut(s)	185, 1577
HinP1I	GCGC	2 cut(s)	185, 1577
HindIII	AAGCTT	1 cut(s)	1739
HinfI	GANTC	7 cut(s)	338, 350, 734, 1139, 1582, 1682, 1769
HpaII	CCGG	3 cut(s)	107, 889, 981
HphI	GGTGA	5 cut(s)	570, 2017, 2153, 2246, 2397
Hpy166II	GTNNAC	4 cut(s)	467, 860, 1148, 1658
Hpy8I	GTNNAC	4 cut(s)	467, 860, 1148, 1658
Hpy99I	CGWCG	1 cut(s)	1981
HpyAV	CCTTC	9 cut(s)	83, 605, 827, 1124, 1215, 1560, 1619, 1996, 2276
HpyCH4III	ACNGT	3 cut(s)	246, 1756, 2362
HpyCH4IV	ACGT	2 cut(s)	571, 2018
HpyF10VI	GCNNNNNNNGC	9 cut(s)	182, 582, 719, 850, 1576, 1607, 1637, 2030, 2222
HpyF3I	CTNAG	7 cut(s)	264, 1312, 1442, 1798, 2270, 2418, 2433
HpySE526I	ACGT	2 cut(s)	571, 2018
HspAI	GCGC	2 cut(s)	185, 1577
KpnI	GGTACC	1 cut(s)	630
Ksp22I	TGATCA	3 cut(s)	325, 1501, 1540
LguI	GCTCTTC	1 cut(s)	2407
LmnI	GCTCC	9 cut(s)	29, 50, 182, 464, 1058, 1252, 1598, 1903, 1982
Lsp1109I	GCAGC	9 cut(s)	619, 1558, 1586, 1627, 1684, 1862, 1918, 1958, 2138
LweI	GCATC	3 cut(s)	700, 1267, 1659
MabI	ACCWGGT	1 cut(s)	514
MaeI	CTAG	7 cut(s)	221, 863, 1118, 1251, 2192, 2376, 2411
MaeII	ACGT	2 cut(s)	571, 2018
MaeIII	GTNAC	6 cut(s)	212, 754, 928, 1825, 2005, 2048
MfeI	CAATTG	2 cut(s)	1281, 1349
MflI	RGATCY	1 cut(s)	960
MhlI	GDGCHC	5 cut(s)	359, 1081, 1249, 1660, 1987
MlyI	GAGTC	5 cut(s)	347, 359, 1576, 1691, 1778
MmeI	TCCRAC	2 cut(s)	684, 1180
MroXI	GAANNNNTTC	3 cut(s)	1956, 1972, 2250
MseI	TTAA	8 cut(s)	392, 495, 621, 812, 969, 1491, 1634, 2328
MslI	CAYNNNNRTG	3 cut(s)	744, 1184, 2259
MspA1I	CMGCKG	2 cut(s)	632, 1949
MspI	CCGG	3 cut(s)	107, 889, 981
MspR9I	CCNGG	9 cut(s)	108, 368, 380, 516, 716, 1098, 1449, 1587, 1645
MunI	CAATTG	2 cut(s)	1281, 1349
Mva1269I	GAATGC	1 cut(s)	855
MvaI	CCWGG	8 cut(s)	368, 380, 516, 716, 1098, 1449, 1587, 1645
MvnI	CGCG	1 cut(s)	2151
MwoI	GCNNNNNNNGC	9 cut(s)	182, 582, 719, 850, 1576, 1607, 1637, 2030, 2222
NciI	CCSGG	1 cut(s)	108
NdeI	CATATG	1 cut(s)	760
NlaIV	GGNNCC	9 cut(s)	227, 460, 513, 628, 826, 1318, 1408, 1984, 2370
NmuCI	GTSAC	3 cut(s)	1825, 2005, 2048
NspI	RCATGY	2 cut(s)	1781, 1808
PaeI	GCATGC	2 cut(s)	1781, 1808
PaeR7I	CTCGAG	1 cut(s)	1839
PagI	TCATGA	1 cut(s)	739
PceI	AGGCCT	2 cut(s)	1417, 1447
PciSI	GCTCTTC	1 cut(s)	2407
PcsI	WCGNNNNNNNCGW	2 cut(s)	70, 1459
PctI	GAATGC	1 cut(s)	855
PdmI	GAANNNNTTC	3 cut(s)	1956, 1972, 2250
PfeI	GAWTC	2 cut(s)	734, 1139
PfoI	TCCNGGA	2 cut(s)	378, 1585
Ple19I	CGATCG	1 cut(s)	77
PleI	GAGTC	5 cut(s)	346, 358, 1576, 1690, 1777
PpsI	GAGTC	5 cut(s)	346, 358, 1576, 1690, 1777
Ppu21I	YACGTR	1 cut(s)	572
PpuMI	RGGWCCY	3 cut(s)	159, 1091, 2368
PshBI	ATTAAT	2 cut(s)	621, 812
Psp5II	RGGWCCY	3 cut(s)	159, 1091, 2368
Psp6I	CCWGG	8 cut(s)	366, 378, 514, 714, 1096, 1447, 1585, 1643
PspGI	CCWGG	8 cut(s)	366, 378, 514, 714, 1096, 1447, 1585, 1643
PspN4I	GGNNCC	9 cut(s)	227, 460, 513, 628, 826, 1318, 1408, 1984, 2370
PspPI	GGNCC	5 cut(s)	159, 1091, 1202, 1317, 2368
PspPPI	RGGWCCY	3 cut(s)	159, 1091, 2368
PspXI	VCTCGAGB	1 cut(s)	1839
PstI	CTGCAG	1 cut(s)	2128
PstNI	CAGNNNCTG	1 cut(s)	1960
PsuI	RGATCY	1 cut(s)	960
PvuI	CGATCG	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	1949
RsaI	GTAC	6 cut(s)	570, 628, 662, 1149, 1846, 2148
RsaNI	GTAC	6 cut(s)	569, 627, 661, 1148, 1845, 2147
RseI	CAYNNNNRTG	3 cut(s)	744, 1184, 2259
SapI	GCTCTTC	1 cut(s)	2407
SaqAI	TTAA	8 cut(s)	392, 495, 621, 812, 969, 1491, 1634, 2328
Sau96I	GGNCC	5 cut(s)	159, 1091, 1202, 1317, 2368
ScaI	AGTACT	1 cut(s)	662
SchI	GAGTC	5 cut(s)	347, 359, 1576, 1691, 1778
ScrFI	CCNGG	9 cut(s)	108, 368, 380, 516, 716, 1098, 1449, 1587, 1645
SduI	GDGCHC	5 cut(s)	359, 1081, 1249, 1660, 1987
SexAI	ACCWGGT	1 cut(s)	514
SfaNI	GCATC	3 cut(s)	700, 1267, 1659
SfcI	CTRYAG	4 cut(s)	1689, 1782, 2110, 2124
Sfr274I	CTCGAG	1 cut(s)	1839
SinI	GGWCC	5 cut(s)	159, 1091, 1202, 1317, 2368
SlaI	CTCGAG	1 cut(s)	1839
SmiMI	CAYNNNNRTG	3 cut(s)	744, 1184, 2259
SmlI	CTYRAG	1 cut(s)	1839
SmoI	CTYRAG	1 cut(s)	1839
SnaBI	TACGTA	1 cut(s)	572
SphI	GCATGC	2 cut(s)	1781, 1808
SseBI	AGGCCT	2 cut(s)	1417, 1447
SsiI	CCGC	6 cut(s)	80, 83, 630, 844, 1750, 2373
SspI	AATATT	2 cut(s)	673, 906
SspMI	CTAG	7 cut(s)	221, 863, 1118, 1251, 2192, 2376, 2411
StuI	AGGCCT	2 cut(s)	1417, 1447
StyD4I	CCNGG	9 cut(s)	106, 366, 378, 514, 714, 1096, 1447, 1585, 1643
StyI	CCWWGG	3 cut(s)	294, 1899, 1933
TaaI	ACNGT	3 cut(s)	246, 1756, 2362
TaiI	ACGT	2 cut(s)	574, 2021
TaqI	TCGA	9 cut(s)	34, 135, 353, 525, 609, 1288, 1453, 1840, 1976
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	3 cut(s)	83, 86, 1752
TfiI	GAWTC	2 cut(s)	734, 1139
Tru1I	TTAA	8 cut(s)	392, 495, 621, 812, 969, 1491, 1634, 2328
Tru9I	TTAA	8 cut(s)	392, 495, 621, 812, 969, 1491, 1634, 2328
TscAI	CASTG	3 cut(s)	259, 469, 1759
TseFI	GTSAC	3 cut(s)	1825, 2005, 2048
TseI	GCWGC	9 cut(s)	632, 1546, 1574, 1640, 1672, 1850, 1906, 1946, 2126
Tsp45I	GTSAC	3 cut(s)	1825, 2005, 2048
TspDTI	ATGAA	8 cut(s)	435, 615, 1005, 1168, 1542, 1638, 1665, 1896
TspRI	CASTG	3 cut(s)	259, 469, 1759
VneI	GTGCAC	1 cut(s)	1656
VpaK11BI	GGWCC	5 cut(s)	159, 1091, 1202, 1317, 2368
VspI	ATTAAT	2 cut(s)	621, 812
XagI	CCTNNNNNAGG	1 cut(s)	1441
XapI	RAATTY	8 cut(s)	52, 233, 274, 406, 688, 1013, 1065, 1971
XbaI	TCTAGA	1 cut(s)	2410
XceI	RCATGY	2 cut(s)	1781, 1808
XhoI	CTCGAG	1 cut(s)	1839
XmnI	GAANNNNTTC	3 cut(s)	1956, 1972, 2250
XspI	CTAG	7 cut(s)	221, 863, 1118, 1251, 2192, 2376, 2411
ZrmI	AGTACT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.